cluster # 5117

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Oryza sativa
cluster # 5117 cluster # 5117 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5117#0 length = 1443 sequences # 2

consensus_5117#1 length = 443 sequences # 1

consensusID : consensus_5117#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1443
fasta sequence

                              [GGACGAGAGAACGAGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTGGAGCTCATGTTCTCGGTGCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCCGGCCTGGCAAAAAATCAGTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAACTCAAGTTCCTTCTTTCCTGAGAACAGCCCATTTCAGGAGGGATCTTAGCAGAGTACGTCAATTTTATTATTCAATACTGCTTGTGGATAGAATTACTCTGTTGGCAAGGTTCTTTGTTTTAAGTAACAAATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGACCGAGGCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTCATACACTTTTGTCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGCCTCTTATTCAGACAGTAGAATGTCGTATTTGCCAAGAGGAGGATAACATCAGCAACCTTGAGAGTCCATGTGCTTGCACTGGAAGTCTAAAGTATGCTCATCGGGCTTGCGTGCAGAGATGGTGCGATGAGAAAGGAGATTTGACATGTGAAATTTGCCATGAGCCATACAAACACGGGTACACTGCACTTCCTAGAGCTCATCCTGATGAGACAACCATTGATATAAGTGGTGGTTGGACCATTACCGGCACAGCATTTGATTTGCATGATCCAAGGATTATTGCAATGGCACAAAATCACATAATGGAAGCTGACTATGATGATTATTCAGTAACAAATGCGAGCTCTGCTGCCTTTTGCCGCTCTGCTGCGCTTATTTTAATGGCTCTGTTAGTGTTGAGGCATGTGTTGGTACTAACTGATGAAGATGAAGACGACGCTTCTTCAATGTTTTTGCTTTTTCTACTACGAGTCACCGGGTTTCTGCTACCATTCTACATCATGGCTTGGGCAATCAATATCTTACAGGGCCGAAGGCGGAGGCAGGTAGCGGCTGCTCTAGCTGCAACTGAGGTGGCATTCATTCTACAGTCAGGACAAAGAAGGGGCATGAATTTCACCATCGCACCAGATTCCCCTGCCACACCTCAGCATGAGCCTATCCCTTGAATTAATGTTGTCAGCATCACTCAAGTTCATGTGGCATTGTTTAGCTGATGACTTGACGAAGAATTTGTTAATTGTGATTAATTGATTATTCAGCACAAGATGAGATGCAATGTCATCTCTTATCAGATAGAATGTATTAATTCATGTATGTTTTGGTGTGTGTGTGTGTAAGAGGTGTCTGTGATACTGAAGCCCCTTTTTTATGTATGTATGGTATGGGTTCTGTGTTCAGTGTCCTGCGTATAGGTAGAGAGCACGGAGAAACACTTTCAGTAGGTTCCTAATTTTTGTCTCCCAGAAATCCTTG]

[+] EMBL AK071857             [GGACGAGAGAACGAGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTGGAGCTCATGTTCTCGGTGCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCCGGCCTGGCAAAAAATCAGTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAACTCAAGTTCCTTCTTTCCTGAGAACAGCCCATTTCAGGAGGGATCTTAGCAGAGTACGTCAATTTTATTATTCAATACTGCTTGTGGATAGAATTACTCTGTTGGCAAGGTTCTTTGTTTTAAGTAACAAATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGACCGAGGCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTCATACACTTTTGTCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGCCTCTTATTCAGACAGTAGAATGTCGTATTTGCCAAGAGGAGGATAACATCAGCAACCTTGAGAGTCCATGTGCTTGCACTGGAAGTCTAAAGTATGCTCATCGGGCTTGCGTGCAGAGATGGTGCGATGAGAAAGGAGATTTGACATGTGAAATTTGCCATGAGCCATACAAACACGGGTACACTGCACTTCCTAGAGCTCATCCTGATGAGACAACCATTGATATAAGTGGTGGTTGGACCATTACCGGCACAGCATTTGATTTGCATGATCCAAGGATTATTGCAATGGCACAAAATCACATAATGGAAGCTGACTATGATGATTATTCAGTAACAAATGCGAGCTCTGCTGCCTTTTGCCGCTCTGCTGCGCTTATTTTAATGGCTCTGTTAGTGTTGAGGCATGTGTTGGTACTAACTGATGAAGATGAAGACGACGCTTCTTCAATGTTTTTGCTTTTTCTACTACGAGTCACCGGGTTTCTGCTACCATTCTACATCATGGCTTGGGCAATCAATATCTTACAGGGCCGAAGGCGGAGGCAGGTAGCGGCTGCTCTAGCTGCAACTGAGGTGGCATTCATTCTACAGTCAGGACAAAGAAGGGGCATGAATTTCACCATCGCACCAGATTCCCCTGCCACACCTCAGCATGAGCCTATCCCTTGAATTAATGTTGTCAGCATCACTCAAGTTCATGTGGCATTGTTTAGCTGATGACTTGACGAAGAATTTGTTAATTGTGATTAATTGATTATTCAGCACAAGATGAGATGCAATGTCATCTCTTATCAGATAGAATGTATTAATTCATGTATGTTTTGGTGTGTGTGTGTGTAAGAGGTGTCTGTGATACTGAAGCCCCTTTTTTATGTATGTATGGTATGGGTTCTGTGTTCAGTGTCCTGCGTATAGGTAGAGAGCACGGAGAAACACTTTCAGTAGGTTCCTAATTTTTGTCTCCCAGAAATCCTTG]
[+] EMBL AU172576             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ttgtGTAGCGGCTGCTCTAGCTGCAACTGAGGTGGCATTCATTCTACAGTCAGGACAAAGAAGGGGCATGAATTTCACCATCGCACCAGATTCCCCTGCCACACCTCAGCATGAGCCTATCCCTTGAATTAATGTTGTCAGCATCACTCAAGTTCATGTGGCATTGTTTAGCTGATGACTTGACGAAGAATTTGTTAATTGTGATTAATTAATTATTCAGCACAAGATGAGATGCAATGTCATCTCTTATCAGATAGAATGTATTAATTCATGTATGTTTTGGTGTGTGTGTGTGTAANAGGTGTCTGTGATACTGAAGCCCCTTTTTTATGTATGTATGGTATGGGTTCTGTGTTCAGTGTCCTGCGTATAGGTAGAGAGCACGGAGAAACACTTTCAGTAGGTTCCTAATTTTTGTCTCCCAAAAA      ]




>consensus_5117#0
GGACGAGAGAACGAGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTGGAGC
TCATGTTCTCGGTGCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCCGGCC
TGGCAAAAAATCAGTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAACTCAA
GTTCCTTCTTTCCTGAGAACAGCCCATTTCAGGAGGGATCTTAGCAGAGTACGTCAATTT
TATTATTCAATACTGCTTGTGGATAGAATTACTCTGTTGGCAAGGTTCTTTGTTTTAAGT
AACAAATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGA
CCGAGGCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTC
ATACACTTTTGTCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGCCTCTTATTCAGACAG
TAGAATGTCGTATTTGCCAAGAGGAGGATAACATCAGCAACCTTGAGAGTCCATGTGCTT
GCACTGGAAGTCTAAAGTATGCTCATCGGGCTTGCGTGCAGAGATGGTGCGATGAGAAAG
GAGATTTGACATGTGAAATTTGCCATGAGCCATACAAACACGGGTACACTGCACTTCCTA
GAGCTCATCCTGATGAGACAACCATTGATATAAGTGGTGGTTGGACCATTACCGGCACAG
CATTTGATTTGCATGATCCAAGGATTATTGCAATGGCACAAAATCACATAATGGAAGCTG
ACTATGATGATTATTCAGTAACAAATGCGAGCTCTGCTGCCTTTTGCCGCTCTGCTGCGC
TTATTTTAATGGCTCTGTTAGTGTTGAGGCATGTGTTGGTACTAACTGATGAAGATGAAG
ACGACGCTTCTTCAATGTTTTTGCTTTTTCTACTACGAGTCACCGGGTTTCTGCTACCAT
TCTACATCATGGCTTGGGCAATCAATATCTTACAGGGCCGAAGGCGGAGGCAGGTAGCGG
CTGCTCTAGCTGCAACTGAGGTGGCATTCATTCTACAGTCAGGACAAAGAAGGGGCATGA
ATTTCACCATCGCACCAGATTCCCCTGCCACACCTCAGCATGAGCCTATCCCTTGAATTA
ATGTTGTCAGCATCACTCAAGTTCATGTGGCATTGTTTAGCTGATGACTTGACGAAGAAT
TTGTTAATTGTGATTAATTGATTATTCAGCACAAGATGAGATGCAATGTCATCTCTTATC
AGATAGAATGTATTAATTCATGTATGTTTTGGTGTGTGTGTGTGTAAGAGGTGTCTGTGA
TACTGAAGCCCCTTTTTTATGTATGTATGGTATGGGTTCTGTGTTCAGTGTCCTGCGTAT
AGGTAGAGAGCACGGAGAAACACTTTCAGTAGGTTCCTAATTTTTGTCTCCCAGAAATCC
TTG

consensusID : consensus_5117#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [AGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTGGAGCTCATGTTCTCGGTGCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCCGGCCTGGCAAAAAATCAGTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAACTCAAGTTCCTTCTTTCCTGAGAACAGGAGGGATCTTAGCAGAGTACGTCAATTTTATTATTCAATACTGCTTGTGGATAGAATTACTCTGTTGGCAAGGTTCTTTGTTTTAAGTAACAAATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGACCGAGGCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTCATACACTTTTGGTCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGC]

[+] EMBL C72989               [AGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTGGAGCTCATGTTCTCGGTGCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCCGGCCTGGCAAAAAATCAGTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAACTCAAGTTCCTTCTTTCCTGAGAACAGGAGGGATCTTAGCAGAGTACGTCAATTTTATTATTCAATACTGCTTGTGGATAGAATTACTCTGTTGGCAAGGTTCTTTGTTTTAAGTAACAAATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGACCGAGGCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTCATACACTTTTGGTCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGC]




>consensus_5117#1
AGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTGGAGCTCATGTTCTCGGT
GCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCCGGCCTGGCAAAAAATCA
GTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAACTCAAGTTCCTTCTTTCC
TGAGAACAGGAGGGATCTTAGCAGAGTACGTCAATTTTATTATTCAATACTGCTTGTGGA
TAGAATTACTCTGTTGGCAAGGTTCTTTGTTTTAAGTAACAAATGAAGGATCATCTAATG
CTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGACCGAGGCAGCCATGAATCTGCCT
TCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTCATACACTTTTGGTCAGTTCGGGA
AAGCATGGGTGCTGAGGAAGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5117#0      GGACGAGAGAACGAGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTGGAGC 60
consensus_5117#1      -------------AGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTGGAGC 47
                                   ***********************************************

consensus_5117#0      TCATGTTCTCGGTGCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCCGGCC 120
consensus_5117#1      TCATGTTCTCGGTGCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCCGGCC 107
                      ************************************************************

consensus_5117#0      TGGCAAAAAATCAGTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAACTCAA 180
consensus_5117#1      TGGCAAAAAATCAGTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAACTCAA 167
                      ************************************************************

consensus_5117#0      GTTCCTTCTTTCCTGAGAACAGCCCATTTCAGGAGGGATCTTAGCAGAGTACGTCAATTT 240
consensus_5117#1      GTTCCTTCTTTCCTGAGAACAG----------GAGGGATCTTAGCAGAGTACGTCAATTT 217
                      **********************          ****************************

consensus_5117#0      TATTATTCAATACTGCTTGTGGATAGAATTACTCTGTTGGCAAGGTTCTTTGTTTTAAGT 300
consensus_5117#1      TATTATTCAATACTGCTTGTGGATAGAATTACTCTGTTGGCAAGGTTCTTTGTTTTAAGT 277
                      ************************************************************

consensus_5117#0      AACAAATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGA 360
consensus_5117#1      AACAAATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGA 337
                      ************************************************************

consensus_5117#0      CCGAGGCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTC 420
consensus_5117#1      CCGAGGCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTC 397
                      ************************************************************

consensus_5117#0      ATACACTTTTG-TCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGCCTCTTATTCAGACA 479
consensus_5117#1      ATACACTTTTGGTCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGC-------------- 443
                      *********** **********************************              

consensus_5117#0      GTAGAATGTCGTATTTGCCAAGAGGAGGATAACATCAGCAACCTTGAGAGTCCATGTGCT 539
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      TGCACTGGAAGTCTAAAGTATGCTCATCGGGCTTGCGTGCAGAGATGGTGCGATGAGAAA 599
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      GGAGATTTGACATGTGAAATTTGCCATGAGCCATACAAACACGGGTACACTGCACTTCCT 659
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      AGAGCTCATCCTGATGAGACAACCATTGATATAAGTGGTGGTTGGACCATTACCGGCACA 719
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      GCATTTGATTTGCATGATCCAAGGATTATTGCAATGGCACAAAATCACATAATGGAAGCT 779
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      GACTATGATGATTATTCAGTAACAAATGCGAGCTCTGCTGCCTTTTGCCGCTCTGCTGCG 839
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      CTTATTTTAATGGCTCTGTTAGTGTTGAGGCATGTGTTGGTACTAACTGATGAAGATGAA 899
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      GACGACGCTTCTTCAATGTTTTTGCTTTTTCTACTACGAGTCACCGGGTTTCTGCTACCA 959
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      TTCTACATCATGGCTTGGGCAATCAATATCTTACAGGGCCGAAGGCGGAGGCAGGTAGCG 1019
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      GCTGCTCTAGCTGCAACTGAGGTGGCATTCATTCTACAGTCAGGACAAAGAAGGGGCATG 1079
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      AATTTCACCATCGCACCAGATTCCCCTGCCACACCTCAGCATGAGCCTATCCCTTGAATT 1139
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      AATGTTGTCAGCATCACTCAAGTTCATGTGGCATTGTTTAGCTGATGACTTGACGAAGAA 1199
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      TTTGTTAATTGTGATTAATTGATTATTCAGCACAAGATGAGATGCAATGTCATCTCTTAT 1259
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      CAGATAGAATGTATTAATTCATGTATGTTTTGGTGTGTGTGTGTGTAAGAGGTGTCTGTG 1319
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      ATACTGAAGCCCCTTTTTTATGTATGTATGGTATGGGTTCTGTGTTCAGTGTCCTGCGTA 1379
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      TAGGTAGAGAGCACGGAGAAACACTTTCAGTAGGTTCCTAATTTTTGTCTCCCAGAAATC 1439
consensus_5117#1      ------------------------------------------------------------
                                                                                  

consensus_5117#0      CTTG 1443
consensus_5117#1      ----