These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1443 fasta sequence [GGACGAGAGAACGAGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTGGAGCTCATGTTCTCGGTGCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCCGGCCTGGCAAAAAATCAGTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAACTCAAGTTCCTTCTTTCCTGAGAACAGCCCATTTCAGGAGGGATCTTAGCAGAGTACGTCAATTTTATTATTCAATACTGCTTGTGGATAGAATTACTCTGTTGGCAAGGTTCTTTGTTTTAAGTAACAAATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGACCGAGGCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTCATACACTTTTGTCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGCCTCTTATTCAGACAGTAGAATGTCGTATTTGCCAAGAGGAGGATAACATCAGCAACCTTGAGAGTCCATGTGCTTGCACTGGAAGTCTAAAGTATGCTCATCGGGCTTGCGTGCAGAGATGGTGCGATGAGAAAGGAGATTTGACATGTGAAATTTGCCATGAGCCATACAAACACGGGTACACTGCACTTCCTAGAGCTCATCCTGATGAGACAACCATTGATATAAGTGGTGGTTGGACCATTACCGGCACAGCATTTGATTTGCATGATCCAAGGATTATTGCAATGGCACAAAATCACATAATGGAAGCTGACTATGATGATTATTCAGTAACAAATGCGAGCTCTGCTGCCTTTTGCCGCTCTGCTGCGCTTATTTTAATGGCTCTGTTAGTGTTGAGGCATGTGTTGGTACTAACTGATGAAGATGAAGACGACGCTTCTTCAATGTTTTTGCTTTTTCTACTACGAGTCACCGGGTTTCTGCTACCATTCTACATCATGGCTTGGGCAATCAATATCTTACAGGGCCGAAGGCGGAGGCAGGTAGCGGCTGCTCTAGCTGCAACTGAGGTGGCATTCATTCTACAGTCAGGACAAAGAAGGGGCATGAATTTCACCATCGCACCAGATTCCCCTGCCACACCTCAGCATGAGCCTATCCCTTGAATTAATGTTGTCAGCATCACTCAAGTTCATGTGGCATTGTTTAGCTGATGACTTGACGAAGAATTTGTTAATTGTGATTAATTGATTATTCAGCACAAGATGAGATGCAATGTCATCTCTTATCAGATAGAATGTATTAATTCATGTATGTTTTGGTGTGTGTGTGTGTAAGAGGTGTCTGTGATACTGAAGCCCCTTTTTTATGTATGTATGGTATGGGTTCTGTGTTCAGTGTCCTGCGTATAGGTAGAGAGCACGGAGAAACACTTTCAGTAGGTTCCTAATTTTTGTCTCCCAGAAATCCTTG] [+] EMBL AK071857 [GGACGAGAGAACGAGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTGGAGCTCATGTTCTCGGTGCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCCGGCCTGGCAAAAAATCAGTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAACTCAAGTTCCTTCTTTCCTGAGAACAGCCCATTTCAGGAGGGATCTTAGCAGAGTACGTCAATTTTATTATTCAATACTGCTTGTGGATAGAATTACTCTGTTGGCAAGGTTCTTTGTTTTAAGTAACAAATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGACCGAGGCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTCATACACTTTTGTCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGCCTCTTATTCAGACAGTAGAATGTCGTATTTGCCAAGAGGAGGATAACATCAGCAACCTTGAGAGTCCATGTGCTTGCACTGGAAGTCTAAAGTATGCTCATCGGGCTTGCGTGCAGAGATGGTGCGATGAGAAAGGAGATTTGACATGTGAAATTTGCCATGAGCCATACAAACACGGGTACACTGCACTTCCTAGAGCTCATCCTGATGAGACAACCATTGATATAAGTGGTGGTTGGACCATTACCGGCACAGCATTTGATTTGCATGATCCAAGGATTATTGCAATGGCACAAAATCACATAATGGAAGCTGACTATGATGATTATTCAGTAACAAATGCGAGCTCTGCTGCCTTTTGCCGCTCTGCTGCGCTTATTTTAATGGCTCTGTTAGTGTTGAGGCATGTGTTGGTACTAACTGATGAAGATGAAGACGACGCTTCTTCAATGTTTTTGCTTTTTCTACTACGAGTCACCGGGTTTCTGCTACCATTCTACATCATGGCTTGGGCAATCAATATCTTACAGGGCCGAAGGCGGAGGCAGGTAGCGGCTGCTCTAGCTGCAACTGAGGTGGCATTCATTCTACAGTCAGGACAAAGAAGGGGCATGAATTTCACCATCGCACCAGATTCCCCTGCCACACCTCAGCATGAGCCTATCCCTTGAATTAATGTTGTCAGCATCACTCAAGTTCATGTGGCATTGTTTAGCTGATGACTTGACGAAGAATTTGTTAATTGTGATTAATTGATTATTCAGCACAAGATGAGATGCAATGTCATCTCTTATCAGATAGAATGTATTAATTCATGTATGTTTTGGTGTGTGTGTGTGTAAGAGGTGTCTGTGATACTGAAGCCCCTTTTTTATGTATGTATGGTATGGGTTCTGTGTTCAGTGTCCTGCGTATAGGTAGAGAGCACGGAGAAACACTTTCAGTAGGTTCCTAATTTTTGTCTCCCAGAAATCCTTG] [+] EMBL AU172576 [ ttgtGTAGCGGCTGCTCTAGCTGCAACTGAGGTGGCATTCATTCTACAGTCAGGACAAAGAAGGGGCATGAATTTCACCATCGCACCAGATTCCCCTGCCACACCTCAGCATGAGCCTATCCCTTGAATTAATGTTGTCAGCATCACTCAAGTTCATGTGGCATTGTTTAGCTGATGACTTGACGAAGAATTTGTTAATTGTGATTAATTAATTATTCAGCACAAGATGAGATGCAATGTCATCTCTTATCAGATAGAATGTATTAATTCATGTATGTTTTGGTGTGTGTGTGTGTAANAGGTGTCTGTGATACTGAAGCCCCTTTTTTATGTATGTATGGTATGGGTTCTGTGTTCAGTGTCCTGCGTATAGGTAGAGAGCACGGAGAAACACTTTCAGTAGGTTCCTAATTTTTGTCTCCCAAAAA ] consensusID : consensus_5117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [AGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTGGAGCTCATGTTCTCGGTGCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCCGGCCTGGCAAAAAATCAGTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAACTCAAGTTCCTTCTTTCCTGAGAACAGGAGGGATCTTAGCAGAGTACGTCAATTTTATTATTCAATACTGCTTGTGGATAGAATTACTCTGTTGGCAAGGTTCTTTGTTTTAAGTAACAAATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGACCGAGGCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTCATACACTTTTGGTCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGC] [+] EMBL C72989 [AGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTGGAGCTCATGTTCTCGGTGCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCCGGCCTGGCAAAAAATCAGTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAACTCAAGTTCCTTCTTTCCTGAGAACAGGAGGGATCTTAGCAGAGTACGTCAATTTTATTATTCAATACTGCTTGTGGATAGAATTACTCTGTTGGCAAGGTTCTTTGTTTTAAGTAACAAATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGACCGAGGCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTCATACACTTTTGGTCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5117#0 GGACGAGAGAACGAGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTGGAGC 60 consensus_5117#1 -------------AGGAGGCACGCACGAGAGCTCCTCCTCCCACCCAAGCACGGTGGAGC 47 *********************************************** consensus_5117#0 TCATGTTCTCGGTGCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCCGGCC 120 consensus_5117#1 TCATGTTCTCGGTGCCTGTTCTCAATCCTAATAAAGTTGGCTGACGTTGCATCGCCGGCC 107 ************************************************************ consensus_5117#0 TGGCAAAAAATCAGTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAACTCAA 180 consensus_5117#1 TGGCAAAAAATCAGTGCTTGTTTTTGTCTTGAAGCTTCCACGGTTCCACTAATAACTCAA 167 ************************************************************ consensus_5117#0 GTTCCTTCTTTCCTGAGAACAGCCCATTTCAGGAGGGATCTTAGCAGAGTACGTCAATTT 240 consensus_5117#1 GTTCCTTCTTTCCTGAGAACAG----------GAGGGATCTTAGCAGAGTACGTCAATTT 217 ********************** **************************** consensus_5117#0 TATTATTCAATACTGCTTGTGGATAGAATTACTCTGTTGGCAAGGTTCTTTGTTTTAAGT 300 consensus_5117#1 TATTATTCAATACTGCTTGTGGATAGAATTACTCTGTTGGCAAGGTTCTTTGTTTTAAGT 277 ************************************************************ consensus_5117#0 AACAAATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGA 360 consensus_5117#1 AACAAATGAAGGATCATCTAATGCTTAATGTTAGCAACCTTCCCGAGTCTGTTGAGGCGA 337 ************************************************************ consensus_5117#0 CCGAGGCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTC 420 consensus_5117#1 CCGAGGCAGCCATGAATCTGCCTTCCGGGGGAGTTTCTCTACCACCGTTGTCTACAACTC 397 ************************************************************ consensus_5117#0 ATACACTTTTG-TCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGCCTCTTATTCAGACA 479 consensus_5117#1 ATACACTTTTGGTCAGTTCGGGAAAGCATGGGTGCTGAGGAAGAGC-------------- 443 *********** ********************************** consensus_5117#0 GTAGAATGTCGTATTTGCCAAGAGGAGGATAACATCAGCAACCTTGAGAGTCCATGTGCT 539 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 TGCACTGGAAGTCTAAAGTATGCTCATCGGGCTTGCGTGCAGAGATGGTGCGATGAGAAA 599 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 GGAGATTTGACATGTGAAATTTGCCATGAGCCATACAAACACGGGTACACTGCACTTCCT 659 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 AGAGCTCATCCTGATGAGACAACCATTGATATAAGTGGTGGTTGGACCATTACCGGCACA 719 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 GCATTTGATTTGCATGATCCAAGGATTATTGCAATGGCACAAAATCACATAATGGAAGCT 779 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 GACTATGATGATTATTCAGTAACAAATGCGAGCTCTGCTGCCTTTTGCCGCTCTGCTGCG 839 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 CTTATTTTAATGGCTCTGTTAGTGTTGAGGCATGTGTTGGTACTAACTGATGAAGATGAA 899 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 GACGACGCTTCTTCAATGTTTTTGCTTTTTCTACTACGAGTCACCGGGTTTCTGCTACCA 959 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 TTCTACATCATGGCTTGGGCAATCAATATCTTACAGGGCCGAAGGCGGAGGCAGGTAGCG 1019 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 GCTGCTCTAGCTGCAACTGAGGTGGCATTCATTCTACAGTCAGGACAAAGAAGGGGCATG 1079 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 AATTTCACCATCGCACCAGATTCCCCTGCCACACCTCAGCATGAGCCTATCCCTTGAATT 1139 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 AATGTTGTCAGCATCACTCAAGTTCATGTGGCATTGTTTAGCTGATGACTTGACGAAGAA 1199 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 TTTGTTAATTGTGATTAATTGATTATTCAGCACAAGATGAGATGCAATGTCATCTCTTAT 1259 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 CAGATAGAATGTATTAATTCATGTATGTTTTGGTGTGTGTGTGTGTAAGAGGTGTCTGTG 1319 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 ATACTGAAGCCCCTTTTTTATGTATGTATGGTATGGGTTCTGTGTTCAGTGTCCTGCGTA 1379 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 TAGGTAGAGAGCACGGAGAAACACTTTCAGTAGGTTCCTAATTTTTGTCTCCCAGAAATC 1439 consensus_5117#1 ------------------------------------------------------------ consensus_5117#0 CTTG 1443 consensus_5117#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||