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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1284 fasta sequence
[AGTCGCGCGCAAGCCGCCGCCGCCCCCTTCCAAAATTCGGTCGCCTCTTTCCCGATCCGGTCAAATTGGTAGAGGGGAAATGATCCCTTCGATCCCCTCTATCTTTTCCCCTATAGAAACTTCATCTAATTTTGTTTGGAAATCGCCGGATTTGATCTCGATTCGGATTCGTTTTACCCTCCTAACCCTAAACCTTCCTTCTCGTCGCCGGCCGCCGTGGGCCTAGCCGCCGCCCCCTAGCCCCTATAAAAGGACCCCCGAGACCTCCTCTTTTCGTCGCCACCTTCGCCTCAGCTCGCCGCCACTCGTAGCGCCCTAGCCACTAGAGCCCGTGTGCCGCGGCCGCCGAAGGAAGTCCGGTCGTGCGCCGTCGCCGCTCCGGTCGTCGTCGTCGCTCGGGAAGGCCGCCGTCGGGTTCGCCAAGTCATCGCCGTCCTCGTCCCGTCCTCCGTTTCCACCGAAGATCGCCGGAGCATCGCCGTCGTCGTCGACCCGAACGCCTACGCCGCTTCGACCTCGCCACCGTCGCCGTCGGTTGCCGTTCGTCGTCGTCCGAGCCATCGGTGAGTTCGTCGCGTCGCCCTCTACCCGTTGGTGCCCTCCGTTTGCGCCGCCGCGCCGTCGTTCGCCGGTGAGTACGGGGTGCCGAGCCGCCGCCGGTGATGACGTCATCGTCAACGTCAGCGCCACGTCAGCCGTAGACCCGTGGTAGATCAGTTCGATCTCAGCCGTTCGTTTTGTTTAGATTAGATCTCAGCCGTTCGTTCCGTAGACCGTTTCTGTGCACCCGGTCCACCGTGAATCCGAGCCCGCTAATGCAATAAATCCTTTTTCCTTTTCAAAAATAATTCTTTATTGCGTCATAATTCAATTAAAATCTAAATAAATGATTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGGTTGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTGTTTTTTATGATTGTTTATGTACTGTTTTGGTGATTTTGCTCTTTTATGCTTCGATTCCGACGTTCCCGGAGAGTCCGAATTTGCAGGAGAAGATTTTGAAGAGTTCCAAGGTCAGCAAGGCAAATCACATAGATCCCAAACGACCCTTTGAGCATGTTGATCCCGTTTAAAGCTATTGTTTTTATTCAACTAGTGCATTTATTTTTGAATGTCATCGGGTGGGAATGACCTGTTACCTTTGTTATAGCCTTTTGTTATTGATTACCTATACTTTG]
[+] EMBL AK070692 [AGTCGCGCGCAAGCCGCCGCCGCCCCCTTCCAAAATTCGGTCGCCTCTTTCCCGATCCGGTCAAATTGGTAGAGGGGAAATGATCCCTTCGATCCCCTCTATCTTTTCCCCTATAGAAACTTCATCTAATTTTGTTTGGAAATCGCCGGATTTGATCTCGATTCGGATTCGTTTTACCCTCCTAACCCTAAACCTTCCTTCTCGTCGCCGGCCGCCGTGGGCCTAGCCGCCGCCCCCTAGCCCCTATAAAAGGACCCCCGAGACCTCCTCTTTTCGTCGCCACCTTCGCCTCAGCTCGCCGCCACTCGTAGCGCCCTAGCCACTAGAGCCCGTGTGCCGCGGCCGCCGAAGGAAGTCCGGTCGTGCGCCGTCGCCGCTCCGGTCGTCGTCGTCGCTCGGGAAGGCCGCCGTCGGGTTCGCCAAGTCATCGCCGTCCTCGTCCCGTCCTCCGTTTCCACCGAAGATCGCCGGAGCATCGCCGTCGTCGTCGACCCGAACGCCTACGCCGCTTCGACCTCGCCACCGTCGCCGTCGGTTGCCGTTCGTCGTCGTCCGAGCCATCGGTGAGTTCGTCGCGTCGCCCTCTACCCGTTGGTGCCCTCCGTTTGCGCCGCCGCGCCGTCGTTCGCCGGTGAGTACGGGGTGCCGAGCCGCCGCCGGTGATGACGTCATCGTCAACGTCAGCGCCACGTCAGCCGTAGACCCGTGGTAGATCAGTTCGATCTCAGCCGTTCGTTTTGTTTAGATTAGATCTCAGCCGTTCGTTCCGTAGACCGTTTCTGTGCACCCGGTCCACCGTGAATCCGAGCCCGCTAATGCAATAAATCCTTTTTCCTTTTCAAAAATAATTCTTTATTGCGTCATAATTCAATTAAAATCTAAATAAATGATTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGGTTGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTGTTTTTTATGATTGTTTATGTACTGTTTTGGTGATTTTGCTCTTTTATGCTTCGATTCCGACGTTCCCGGAGAGTCCGAATTTGCAGGAGAAGATTTTGAAGAGTTCCAAGGTCAGCAAGGCAAATCACATAGATCCCAAACGACCCTTTGAGCATGTTGATCCCGTTTAAAGCTATTGTTTTTATTCAACTAGTGCATTTATTTTTGAATGTCATCGGGTGGGAATGACCTGTTACCTTTGTTATAGCCTTTTGTTATTGATTACCTATACTTTG]
consensusID : consensus_5118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 837 fasta sequence
[TCTACCCGTCGCCACTCTTGTTTTCGCCTCTCGCCGTCGGTAGCGCCCTAGCCCCGTGAGACCTCGAGCCGCCGTCGTCGCCGTCGCTCCAGCCGTGCGCCGCCGCCGTTCCAGTCGTCGCCGTCGCTCGGGAAGATCGCCATCGTGGTCGCCGTCGCGTCGCCGTCCTCGTCCGCCCCTTCACCATCGCTATCGACCGCCGGAGCACCGCCGTCACCGTCGACCCGAAGGTTGCCGCCGCTTCTACCTCGTCGCCGTCGCCGTCCGTTGCTCCTCCGCCGTTTTTTTGGTCACCGGTGAGTTCGCCGTGCCGTCCGCTACCCGTGGGTGCCCTCCGTTTGCGTCCTCGCGCCGTCGTTCGCCGGCGAGCAAGTGCTCCCGAGCCGCCGAGCCGCCGCTGGTGCTGACGTCGTCGCTGACGTCATCGGGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTTGGATCTCGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTCCGTGAACCGCCGCCATGCGCCCGGTCCACCGCAAACCCTAGCCGCTGACGCAATAATTCCTTTTTCCTTTTCAAAAATAATTCATTATTGCGTCATAATTCAATTAAAATCCATATAAGTGTTTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGTTGGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTACTGTTCATGCTTGTTTATGTGCTGTTTTGGTGTTTTTGCTCTTTTCTGCTTAGATTCCGACGTTTCCGGAGAGTCCGTT]
[+] EMBL CB657727 [TCTACCCGTCGCCACTCTTGTTTTCGCCTCTCGCCGTCGGTAGCGCCCTAGCCCCGTGAGACCTCGAGCCGCCGTCGTCGCCGTCGCTCCAGCCGTGCGCCGCCGCCGTTCCAGTCGTCGCCGTCGCTCGGGAAGATCGCCATCGTGGTCGCCGTCGCGTCGCCGTCCTCGTCCGCCCCTTCACCATCGCTATCGACCGCCGGAGCACCGCCGTCACCGTCGACCCGAAGGTTGCCGCCGCTTCTACCTCGTCGCCGTCGCCGTCCGTTGCTCCTCCGCCGTTTTTTTGGTCACCGGTGAGTTCGCCGTGCCGTCCGCTACCCGTGGGTGCCCTCCGTTTGCGTCCTCGCGCCGTCGTTCGCCGGCGAGCAAGTGCTCCCGAGCCGCCGAGCCGCCGCTGGTGCTGACGTCGTCGCTGACGTCATCGGGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTTGGATCTCGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTCCGTGAACCGCCGCCATGCGCCCGGTCCACCGCAAACCCTAGCCGCTGACGCAATAATTCCTTTTTCCTTTTCAAAAATAATTCATTATTGCGTCATAATTCAATTAAAATCCATATAAGTGTTTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGTTGGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTACTGTTCATGCTTGTTTATGTGCTGTTTTGGTGTTTTTGCTC ]
[-] EMBL CB657728 [ ATCGGGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTTGGATCTCGGCCGTCCGTTTTGGATGGATCGATCTCGGCCGTCCGTTTCCGTGAACCGCCGCCATGCGCCCGGTCCACCGCAAACCCTAGCCGCTGACGCAATAATTCCTTTTTCCTTTTCAAAAATAATTCATTATTGCGTCATAATTCAATTAAAATCCATATAAGTGTTTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGGATTTAGTTGGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATCCACATGTACTGTTCATGCTTGTTTATGTGCTGTTTTGGTGTTTTTGCTCTTTTCTGCTTAGATTCCGACGTTTCCGGAGAGTCCGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5118#0 AGTCGCGCGCAAGCCGCCGCCGCCCCCTTCCAAAATTCGGTCGCCTCTTTCCCGATCCGG 60
consensus_5118#1 ------------------------------------------------------------
consensus_5118#0 TCAAATTGGTAGAGGGGAAATGATCCCTTCGATCCCCTCTATCTTTTCCCCTATAGAAAC 120
consensus_5118#1 ------------------------------------------------------------
consensus_5118#0 TTCATCTAATTTTGTTTGGAAATCGCCGGATTTGATCTCGATTCGGATTCGTTTTACCCT 180
consensus_5118#1 ------------------------------------------------------------
consensus_5118#0 CCTAACCCTAAACCTTCCTTCTCGTCGCCGGCCGCCGTGGGCCTAGCCGCCGCCCCCTAG 240
consensus_5118#1 ------------------------------------------------------------
consensus_5118#0 CCCCTATAAAAGGACCCCCGAGACCTCCTCTTTTCGTCGCCACCTTCGCCTCAGCTCGCC 300
consensus_5118#1 ----------------------------TCTACCCGTCGCCACTCTTGTTTTCGCCTCTC 32
*** ********* * * * ** *
consensus_5118#0 GCCACTCGTAGCGCCCTAGCCACTAGAGCCCGTGTGCCGCGGCCGCCGAAGGAAGTCCGG 360
consensus_5118#1 GCCGTCGGTAGCGCCCTAGCCCCGTGAGACCTCGAGCCGCCGTCGTCGCCGTCGCTCCAG 92
*** ************** * *** ** * ***** * ** ** * *** *
consensus_5118#0 TCGTGCGCCGTCGCCGCTCCGGTCGTCGTCGTCGCTCGGGAAGGCCGCCGTCGGGTTCGC 420
consensus_5118#1 CCGTGCGCCGCCGCCGTTCCAGTCGTCGCCGTCGCTCGGGAAGATCGCCATCGTGGTCGC 152
********* ***** *** ******* ************** **** *** * ****
consensus_5118#0 CAAGTCATCGCCGTCCTCGTCCCGTCCTCCGTTTCCACCGAAGATCGCCGGAGCATCGCC 480
consensus_5118#1 CGTCGCGTCGCCGTCCTCGTCCGCCCCTTCACCATCGCTATCGACCGCCGGAGCACCGCC 212
* * *************** *** * * * ** ********** ****
consensus_5118#0 GTCGTCGTCGACCCGAACGCCTACGCCGCTTCGACCTCGCCACCGTCGCCGTCGGTTGC- 539
consensus_5118#1 GTCACCGTCGACCCGAAGGTTGCCGCCGCTTCTACCTCGTCGCCGTCGCCGTCCGTTGCT 272
*** ************ * ********* ****** * *********** *****
consensus_5118#0 CGTTCGTCGTCGTCCGAGCCATCGGTGAGTTCGTCGCGTCGCCCTCTACCCGTTGGTGCC 599
consensus_5118#1 CCTCCGCCGTTTTTTTGGTCACCGGTGAGTTCGCCGTGCCGTCCGCTACCCGTGGGTGCC 332
* * ** *** * * ** *********** ** * ** ** ******** ******
consensus_5118#0 CTCCGTTTGCGCCGCCGCGCCGTCGTTCGCCGGTGAGTA--------CGGGGTGCCGAGC 651
consensus_5118#1 CTCCGTTTGCGTCCTCGCGCCGTCGTTCGCCGGCGAGCAAGTGCTCCCGAGCCGCCGAGC 392
*********** * ****************** *** * ** * *******
consensus_5118#0 CGCCGCCGGTGATGACGTCATCGTCAACGTCAGCGCCAC-GTCAGCCGTAGAC------- 703
consensus_5118#1 CGCCGCTGGTGCTGACGTCGTCGCTGACGTCATCGGGGCCGTCCGTTTTGGATGGATCGA 452
****** **** ******* *** ****** ** * *** * * **
consensus_5118#0 CCGTGGTAGATCAGTTCG-ATCTCAGCCGTTCGTTTTGTTTAGATTAGATCTCAGCCGTT 762
consensus_5118#1 TCTCGGCCGTCCGTTTTGGATCTCGGCCGTCCGTTTTGGATGGATC-GATCTCGGCCGTC 511
* ** * * ** * ***** ***** ******* * *** ****** *****
consensus_5118#0 CGTT-CCGTAGACCGTTTCTGTGCACCCGGTCCACCGTGAATCCGAGCCCGCTAATGCAA 821
consensus_5118#1 CGTTTCCGTGAACCGCCGCCATGCGCCCGGTCCACCGCAAACCCTAGCC-GCTGACGCAA 570
**** **** **** * *** ************ ** ** **** *** * ****
consensus_5118#0 TAAATCCTTTTTCCTTTTCAAAAATAATTCTTTATTGCGTCATAATTCAATTAAAATCTA 881
consensus_5118#1 TAATTCCTTTTTCCTTTTCAAAAATAATTCATTATTGCGTCATAATTCAATTAAAATCCA 630
*** ************************** *************************** *
consensus_5118#0 AATAAATGATTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGG 941
consensus_5118#1 TATAAGTGTTTTAATCCGATTTAATCTTTAAAAATTCATAACTAATTCATCTTAGCTCGG 690
**** ** ***************************************************
consensus_5118#0 ATTTAGGTTGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATC 1001
consensus_5118#1 ATTTAGTTGGTTCAAGTCTCTAAATTTTTCTAAAATTGAGATCTACATGTTAAAAATATC 750
****** * ***************************************************
consensus_5118#0 CACATGTGTTTTTTATGATTGTTTATGTACTGTTTTGGTGATTTTGCTCTTTTATGCTTC 1061
consensus_5118#1 CACATGTACTGTTCATGCTTGTTTATGTGCTGTTTTGGTGTTTTTGCTCTTTTCTGCTTA 810
******* * ** *** ********** *********** ************ *****
consensus_5118#0 GATTCCGACGTTCCCGGAGAGTCCGAATTTGCAGGAGAAGATTTTGAAGAGTTCCAAGGT 1121
consensus_5118#1 GATTCCGACGTTTCCGGAGAGTCCGTT--------------------------------- 837
************ ************
consensus_5118#0 CAGCAAGGCAAATCACATAGATCCCAAACGACCCTTTGAGCATGTTGATCCCGTTTAAAG 1181
consensus_5118#1 ------------------------------------------------------------
consensus_5118#0 CTATTGTTTTTATTCAACTAGTGCATTTATTTTTGAATGTCATCGGGTGGGAATGACCTG 1241
consensus_5118#1 ------------------------------------------------------------
consensus_5118#0 TTACCTTTGTTATAGCCTTTTGTTATTGATTACCTATACTTTG 1284
consensus_5118#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||