cluster # 5120

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Oryza sativa
cluster # 5120 cluster # 5120 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5120#0 length = 806 sequences # 1

consensus_5120#1 length = 681 sequences # 2

consensusID : consensus_5120#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 806
fasta sequence

                              [TCTTTTTTTTTAAGGAGCTAATAATGTATTTTTGAGATTATGGGAACGTAGATGACACATACGAACAAAATATACATCGAATTTCCAGCTGCCCGCATGCTTGCACCTCATGCGCACCATGTGTGTTAAAATTACAAACTCAATTCAGATATAGAGTACAAGGAATTGGCATAATTTACAGGAGTGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAACCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGTAAGCACCAAATTGCCCGTCGCAATGTAGAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATAATTCTATGCAATAAATATAATATAAGGGAGGATTACACCACTCATCGTTACGTTAGACGTTGCAGTCCTAGTTCCGAGGCAATGAGTCTGAGCAGAACCTGTACAAGCTCCCGTACCCTAGCTTCTCTGATGCATTGGGATATATAGAACTTCAGTATAACTTCATTAGCAATAAAAAGTTGGTACTATAATAAACTGAAGCCAATTTTTAAGAAAAAAAAACACCACCAACTGCTTTAGCCGTGCAGCAAAAAAAAAAAAAAAAAAGTTGGGAACTATACCCAGATTGTCAAATCCCTAACACCGATACTTATTTTTCTCTATAGAGCTTCAGGGCATGTCCATCTGTTAATATTTATATTTTGCTGTGTCGTGTATACTATAACAGACAGAATAAACCTGAAGCCATTTCCATAGGTTATTCTTGTCTTGTTCAAATTTCAATGCAAAGTGTAAA]

[+] EMBL CB625680             [TCTTTTTTTTTAAGGAGCTAATAATGTATTTTTGAGATTATGGGAACGTAGATGACACATACGAACAAAATATACATCGAATTTCCAGCTGCCCGCATGCTTGCACCTCATGCGCACCATGTGTGTTAAAATTACAAACTCAATTCAGATATAGAGTACAAGGAATTGGCATAATTTACAGGAGTGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAACCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGTAAGCACCAAATTGCCCGTCGCAATGTAGAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATAATTCTATGCAATAAATATAATATAAGGGAGGATTACACCACTCATCGTTACGTTAGACGTTGCAGTCCTAGTTCCGAGGCAATGAGTCTGAGCAGAACCTGTACAAGCTCCCGTACCCTAGCTTCTCTGATGCATTGGGATATATAGAACTTCAGTATAACTTCATTAGCAATAAAAAGTTGGTACTATAATAAACTGAAGCCAATTTTTAAGAAAAAAAAACACCACCAACTGCTTTAGCCGTGCAGCAAAAAAAAAAAAAAAAAAGTTGGGAACTATACCCAGATTGTCAAATCCCTAACACCGATACTTATTTTTCTCTATAGAGCTTCAGGGCATGTCCATCTGTTAATATTTATATTTTGCTGTGTCGTGTATACTATAACAGACAGAATAAACCTGAAGCCATTTCCATAGGTTATTCTTGTCTTGTTCAAATTTCAATGCAAAGTGTAAA]




>consensus_5120#0
TCTTTTTTTTTAAGGAGCTAATAATGTATTTTTGAGATTATGGGAACGTAGATGACACAT
ACGAACAAAATATACATCGAATTTCCAGCTGCCCGCATGCTTGCACCTCATGCGCACCAT
GTGTGTTAAAATTACAAACTCAATTCAGATATAGAGTACAAGGAATTGGCATAATTTACA
GGAGTGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAA
CCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGTAAGCACCAAATTGCC
CGTCGCAATGTAGAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATAATTCTATGCAA
TAAATATAATATAAGGGAGGATTACACCACTCATCGTTACGTTAGACGTTGCAGTCCTAG
TTCCGAGGCAATGAGTCTGAGCAGAACCTGTACAAGCTCCCGTACCCTAGCTTCTCTGAT
GCATTGGGATATATAGAACTTCAGTATAACTTCATTAGCAATAAAAAGTTGGTACTATAA
TAAACTGAAGCCAATTTTTAAGAAAAAAAAACACCACCAACTGCTTTAGCCGTGCAGCAA
AAAAAAAAAAAAAAAAGTTGGGAACTATACCCAGATTGTCAAATCCCTAACACCGATACT
TATTTTTCTCTATAGAGCTTCAGGGCATGTCCATCTGTTAATATTTATATTTTGCTGTGT
CGTGTATACTATAACAGACAGAATAAACCTGAAGCCATTTCCATAGGTTATTCTTGTCTT
GTTCAAATTTCAATGCAAAGTGTAAA

consensusID : consensus_5120#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 681
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTACAACGAATTTCCAGCTGCCCGCATGCTTGCACCTCAGGCGCACCATGGGGGTTAAAATTACAAACTCAATTCAAATACAGAGTACAAGGAATTGGCATAATTTACAGGAGGGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAACCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGAAAGCACCAAATTGCCCGTCGCAATGTAAAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATGATTCTATGCAATAAATATAATATAAGGGAGGATTACCCCACTCATCGTTACGTTAGACGTTGCAGTCCTAGTTCCGAGGCAATGAGTCTGAGCAAAACCTGTACAAGCTCCCGTACCCTAACTTCTTTTGAAACAACAAGCTCAAAAAAGGTTGGTAGCAAAGCCAATAAATGACCCCGTCCATGGGACTCATTCTTCTCTAAAGCTTCTTTTAAATATAAGGGCATGCTGAGGGCATTAACTGTTTCCATGTTTATTATTAGCCTAGCGAGTTCTTGAAAAAAACCAAATGGCTCAACAATCCTTAACCTAGGGGAATGGGCCCTTCTCCGAGATCATTTCTATACA-CTAAAAACTGGACCCAAGGATAATCTCACA]

[+] EMBL CA760250             [TTTTTTTTTTTTTTTTTTTTTTTTTTTACAACGAATTTCCAGCTGCCCGCATGCTTGCACCTCAGGCGCACCATGGGGGTTAAAATTACAAACTCAATTCAAATACAGAGTACAAGGAATTGGCATAATTTACAGGAGGGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAACCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGAAAGCACCAAATTGCCCGTCGCAATGTAAAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATGATTCTATGCAATAAATATAATATAAGGGAGGATTACCCCACTCATCGTTACGTTAGACGTTGCAGTCCTAGTTCCGAGGCAATGAGTCTGAGCAAAACCTGTACAAGCTCCCGTACCCTAACTTCTTTTGAAACAACAAGCTCAAAAAAGGTTGGTAGCAAAGCCAATAAATGACCCCGTCCATGGGACTCATTCTTCTCTAAAGCTTCTTTTAAATATAAGGGCATGCTGAGGGCATTAACTGTTTCCATGTTTATTATTAGCCTAGCGAGTTCTTGAAAAAAACCAAATGGCTCAACAATCCTTAACCTAGGGGAATGGGCCCTTCTCCGAGATCATTTCTATACA CTAAAAACTGGACCCAAGGATAA       ]
[+] EMBL CF311846             [                     TTTTTTACATCGAATTTCCAGCTGCCCGCATGCTTGCACCTCATGCGCACCATGTGTGTTAAAATTACAAACTCAATTCAGATACAGAGTACAAGGAATTGGCATAATTTACAGGAGTGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAACCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGTAAGCACAAAATTGCCCGTCGCAATGTAGAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATAATTCTATGCAATAAAAATAATATAAGGGAGGATTACACCACTCATCGTTACGTTAGACGTTGCAGTCCTAGTTCCGAGGCAATGAGTCTGAGCAGAACCTGTACAAGCTCCCGTACCCTAGCTTCTCTTGAGACAACAAGCTCAGAAAAGGTTGGTAGCAAAGCCAATAAATGAGCCCGTCCATGGGACTCATTCTTCTCTAAAGCTTCTTTTAGATATAATGGCATGCTGAGGGCATTAGCTGTTTCCATGTTTATTATTAGTCTAGCGAGTTCTTGTAGAACACAAATTGTCTCATCAATCCTTACACTA GGCAAT GGTCCTTCTCCTAGATCATTTTCAT CAGCTAAAAACT GACCC AGTATAATCTCACA]




>consensus_5120#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTACAACGAATTTCCAGCTGCCCGCATGCTTGCAC
CTCAGGCGCACCATGGGGGTTAAAATTACAAACTCAATTCAAATACAGAGTACAAGGAAT
TGGCATAATTTACAGGAGGGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTG
CTGACTAAAACGAACCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGAA
AGCACCAAATTGCCCGTCGCAATGTAAAAGCAAAAAGGGAAAATTTACCAGCAAAACTCT
ATGATTCTATGCAATAAATATAATATAAGGGAGGATTACCCCACTCATCGTTACGTTAGA
CGTTGCAGTCCTAGTTCCGAGGCAATGAGTCTGAGCAAAACCTGTACAAGCTCCCGTACC
CTAACTTCTTTTGAAACAACAAGCTCAAAAAAGGTTGGTAGCAAAGCCAATAAATGACCC
CGTCCATGGGACTCATTCTTCTCTAAAGCTTCTTTTAAATATAAGGGCATGCTGAGGGCA
TTAACTGTTTCCATGTTTATTATTAGCCTAGCGAGTTCTTGAAAAAAACCAAATGGCTCA
ACAATCCTTAACCTAGGGGAATGGGCCCTTCTCCGAGATCATTTCTATACACTAAAAACT
GGACCCAAGGATAATCTCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5120#0      TCTTTTTTTTTAAGGAGCTAATAATGTATTTTTGAGATTATGGGAACGTAGATGACACAT 60
consensus_5120#1      ----------------------------------------------TTTTTTTTTTTTTT 14
                                                                      *   *      *

consensus_5120#0      ACGAACAAAATATACATCGAATTTCCAGCTGCCCGCATGCTTGCACCTCATGCGCACCAT 120
consensus_5120#1      TTTTTTTTTTTTTACAACGAATTTCCAGCTGCCCGCATGCTTGCACCTCAGGCGCACCAT 74
                                * **** ********************************* *********

consensus_5120#0      GTGTGTTAAAATTACAAACTCAATTCAGATATAGAGTACAAGGAATTGGCATAATTTACA 180
consensus_5120#1      GGGGGTTAAAATTACAAACTCAATTCAAATACAGAGTACAAGGAATTGGCATAATTTACA 134
                      * * *********************** *** ****************************

consensus_5120#0      GGAGTGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAA 240
consensus_5120#1      GGAGGGATCTACGTCAAAATATAACAAAAAAGAAGCTATCTACCTGCTGACTAAAACGAA 194
                      **** *******************************************************

consensus_5120#0      CCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGTAAGCACCAAATTGCC 300
consensus_5120#1      CCACCATATTTCCCAACAAAATGTTACATATACAACCTTTCTCGAAAGCACCAAATTGCC 254
                      ******************************************** ***************

consensus_5120#0      CGTCGCAATGTAGAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATAATTCTATGCAA 360
consensus_5120#1      CGTCGCAATGTAAAAGCAAAAAGGGAAAATTTACCAGCAAAACTCTATGATTCTATGCAA 314
                      ************ *********************************** ***********

consensus_5120#0      TAAATATAATATAAGGGAGGATTACACCACTCATCGTTACGTTAGACGTTGCAGTCCTAG 420
consensus_5120#1      TAAATATAATATAAGGGAGGATTACCCCACTCATCGTTACGTTAGACGTTGCAGTCCTAG 374
                      ************************* **********************************

consensus_5120#0      TTCCGAGGCAATGAGTCTGAGCAGAACCTGTACAAGCTCCCGTACCCTAGCTTCTCT-GA 479
consensus_5120#1      TTCCGAGGCAATGAGTCTGAGCAAAACCTGTACAAGCTCCCGTACCCTAACTTCTTTTGA 434
                      *********************** ************************* ***** * **

consensus_5120#0      TGCATTGGGATATATAGAACTTCAGTATAACTTCATTAGC--AATAAAAAGTTGGTACT- 536
consensus_5120#1      AACAACAAGCTCAAAAAAGGTTGGTAGCAAAGCCAATAAATGACCCCGTCCATGGGACTC 494
                        **    * *  * * *  **      **   ** **    *         *** *** 

consensus_5120#0      ATAATAAACTGAAGCCAATTTTTAAGAAAAAAAAACACCACCAACTGCTTTAGCCGTGCA 596
consensus_5120#1      ATTCTTCTCTAAAGCT--TCTTTTAAATATAAGGGCAT-GCTGAGGGCATTAACTGTTTC 551
                      **  *   ** ****   * *** * * * **   **   *  *  ** *** * **   

consensus_5120#0      GCAAAAAAAAAAAAAAAAAAGTTGGGAACTATACCCAGATTGTCAAATCCCTAACACCGA 656
consensus_5120#1      C-----ATGTTTATTATTAGCCTAGCGAGTTCTTGAAAAAAACCAAATGGCT--CAACAA 604
                            *     *  *  *   * *  * *      * *    *****  **  ** * *

consensus_5120#0      TACTTATTTTTCTCTATAGAGCTTCAGGGCATGTCCATCTGTTAATATTTATATTTTGCT 716
consensus_5120#1      TCCTTAACCTAGGGGAATGGGCCCTTCTCCGAGATCATTTCTATACACTAAAAACTGGAC 664
                      * ****   *     *  * **       *  *  *** * *  * * * * *  * *  

consensus_5120#0      GTGTCGTGTATACTATAACAGACAGAATAAACCTGAAGCCATTTCCATAGGTTATTCTTG 776
consensus_5120#1      ---CCAAGGATAATCTCACA---------------------------------------- 681
                          *  * *** * * ***                                        

consensus_5120#0      TCTTGTTCAAATTTCAATGCAAAGTGTAAA 806
consensus_5120#1      ------------------------------