cluster # 5129

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Oryza sativa
cluster # 5129 cluster # 5129 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5129#0 length = 885 sequences # 2

consensus_5129#1 length = 584 sequences # 1

consensusID : consensus_5129#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 885
fasta sequence

                              [TTTTTTTTTTTTTTCGGGATAATTTAAAGAGCATAATTAGGATGAGTTACATTGTTCTCATGACTACTTCAATACAATGTGCCAACATCTTAACGAGCAACAACATACTACCAAAATCAACAAAAATCATTGTTGCAGTCTTACAGGCCTAATATATATAGTTCACATATAAATATTTAGCTATGCAAAATTATGACCTAAAACTCGAAAGATTTAACATGTTTAACCAAATATACCACTAAATATTTCCTTGATAGACTCCTCAAAAAAAACACGTTCATCATCATCAGAGTCATCATCGCTCAAGAACATGAATGGGCAGCCGGTGTCAAAGAAGCCAACCTCATATTTAACTTCATCATTCGCAGGGTGCTTCAGAGCAACCATCCCTTGATTCACGCAACCATGACAATAGCCATCATCATGTGATTTCACAGGCCAACATAAATAGAATTTCTTTCCGTATACTTGCTTCACTTCAGCAAAATAACATGTCACTGACCAGTATTCGGAAGTGGGTTTCTTCATCTTCACTGTGAAGTTATAATGGTGAAAAATCTTCTGATATGCATCCACACTAAAACATTGATACTGAAGCTCATCTAGATGGTATACCACATCTCTGAGTTCATTTTTTCCTTC-ATATATTTTTCAAAGGCCAACATGACTTCCTTGCTCATCCATCGTTTTCCGTTCTGAACAATTTCTTCTGTAGACAAATTATGCCGTCCTACATCTTCAGCTGCAGGGGAAAGAGACTCTGAATCATGAGATGATTCAGCATCGAACTCACATGGATAAAGCTTAGATGATTCTGGTAACTCTACATTGGGCTGAGCAGCATCTTTGGGTGGGTCGCGGAAGCCATTTATCATAGCTGCGAAT]

[+] EMBL CA760183             [TTTTTTTTTTTTTTCGGGATAATTTAAAGAGCATAATTAGGATGAGTTACATTGTTCTCATGACTACTTCAATACAATGTGCCAACATCTTAACGAGCAACAACATACTACCAAAATCAACAAAAATCATTGTTGCAGTCTTACAGGCCTAATATATATAGTTCACATATAAATATTTAGCTATGCAAAATTATGACCTAAAACTCGAAAGATTTAACATGTTTAACCAAATATACCACTAAATATTTCCTTGATAGACTCCTCAAAAAAAACACGTTCATCATCATCAGAGTCATCATCGCTCAAGAACATGAATGGGCAGCCGGTGTCAAAGAAGCCAACCTCATATTTAACTTCATCATTCGCAGGGTGCTTCAGAGCAACCATCCCTTGATTCACGCAACCATGACAATAGCCATCATCATGTGATTTCACAGGCCAACATAAATAGAATTTCTTTCCGTATACTTGCTTCACTTCAGCAAAATAACATGTCACTGACCAGTATTCGGAAGTGGGTTTCTTCATCTTCACTGTGAAGTTATAATGGTGAAAAATCTTCTGATATGCATCCACACTAAAACATTGATACTGAAGCTCATCTAGATGGTATACCACATCTCTGAGTTCATTTTTTCCTTC ATATATTTTTCAAAGGCCAACATGACTTCCTTGCTCATCCATCGTTTTCCGTTC                                                                                                                                                                                             ]
[-] EMBL CA998390             [                                                                                                                                                                                                                                                                                                                                                                                GGTGCTTCAGAGCAACCATCCC TGATTCACGCAACCATGACAATAGCCATCATCATGTGATTTCACAGGCCAACATAAATAGAATTTCTTTCCGTATACTTGCTTCACTTCAGCAAAATAACATGTCACTGACCAGTCTTCGGAAGTGGGTTTCTTCATCTTCACTGTGAAGTTATAATGGTGAAAAATCTTCTGATATGCATCCACACTAAAACATTGATACTGAAGCTCATCTAGATGGTATACCACATCTCTGAATTCATTTTTTCCTTCAATATATTTTTCAAAGGCCAACATGACTTCCTCGCTCATCCATCGTTTTCCGTTCTGAACAATTTCTTCTGTAGACAAATTATGCCGTCCTACATCTTCAGCTGCAGGGGAAAGAGACTCTGAATCATGAGATGATTCAGCATCGAACTCACATGGATAAAGCTTAGATGATTCTGGTAACTCTACATTGGGCTGAGCAGCATCTTTGGGTGGGTCGCGGAAGCCATTTATCATAGCTGCGAAT]




>consensus_5129#0
TTTTTTTTTTTTTTCGGGATAATTTAAAGAGCATAATTAGGATGAGTTACATTGTTCTCA
TGACTACTTCAATACAATGTGCCAACATCTTAACGAGCAACAACATACTACCAAAATCAA
CAAAAATCATTGTTGCAGTCTTACAGGCCTAATATATATAGTTCACATATAAATATTTAG
CTATGCAAAATTATGACCTAAAACTCGAAAGATTTAACATGTTTAACCAAATATACCACT
AAATATTTCCTTGATAGACTCCTCAAAAAAAACACGTTCATCATCATCAGAGTCATCATC
GCTCAAGAACATGAATGGGCAGCCGGTGTCAAAGAAGCCAACCTCATATTTAACTTCATC
ATTCGCAGGGTGCTTCAGAGCAACCATCCCTTGATTCACGCAACCATGACAATAGCCATC
ATCATGTGATTTCACAGGCCAACATAAATAGAATTTCTTTCCGTATACTTGCTTCACTTC
AGCAAAATAACATGTCACTGACCAGTATTCGGAAGTGGGTTTCTTCATCTTCACTGTGAA
GTTATAATGGTGAAAAATCTTCTGATATGCATCCACACTAAAACATTGATACTGAAGCTC
ATCTAGATGGTATACCACATCTCTGAGTTCATTTTTTCCTTCATATATTTTTCAAAGGCC
AACATGACTTCCTTGCTCATCCATCGTTTTCCGTTCTGAACAATTTCTTCTGTAGACAAA
TTATGCCGTCCTACATCTTCAGCTGCAGGGGAAAGAGACTCTGAATCATGAGATGATTCA
GCATCGAACTCACATGGATAAAGCTTAGATGATTCTGGTAACTCTACATTGGGCTGAGCA
GCATCTTTGGGTGGGTCGCGGAAGCCATTTATCATAGCTGCGAAT

consensusID : consensus_5129#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence

                              [TTTTTTTTTTTTTTTGCAGCCTGCAAAAATAACTATTTATACGAGTGAATTTTTTTTAACAAACTGTTGGCCTGTCCATGAAGCTGCATGAACAATCAACACAATCTAGCTAAGCACAATCTTGACCTCAAACTTAAAAGATTTGAAATGTTTAACCAAATACACTATCAAATATTTCATCAATAGACTCCCCCAAAGGAACCCATTCATGGTCATCAAAGTCATCATCTCTCAAGTATATAAAGGGGCAACCGGTGTTGAAGTAGCCAACCTCAAATTCAACTTCATCATTATCAGGGTGCTTCAAAGCAACCATCCCTTGATTCACGCAACCATGACAATAGCCATTGTCACGCGGCTTCAATGGGCGGCATAAGTAAGATTTCTTCCCATATATTTGCTTCACTTCAGCAAAATAACATGTCAATAACCAGTCTTCTAAGGTGGGTTTCTTCATCTTCACAGTGAAGTTATAATGGTGAAAAACTTTCTGATATGCATCCACACTGAAACATTGATGCTGAAGCTCATCTAGACGGTATACCACATCTCTGAATTCATCTCTTCCTTCCCCCTTGTCTCGN]

[+] EMBL CA760182             [TTTTTTTTTTTTTTTGCAGCCTGCAAAAATAACTATTTATACGAGTGAATTTTTTTTAACAAACTGTTGGCCTGTCCATGAAGCTGCATGAACAATCAACACAATCTAGCTAAGCACAATCTTGACCTCAAACTTAAAAGATTTGAAATGTTTAACCAAATACACTATCAAATATTTCATCAATAGACTCCCCCAAAGGAACCCATTCATGGTCATCAAAGTCATCATCTCTCAAGTATATAAAGGGGCAACCGGTGTTGAAGTAGCCAACCTCAAATTCAACTTCATCATTATCAGGGTGCTTCAAAGCAACCATCCCTTGATTCACGCAACCATGACAATAGCCATTGTCACGCGGCTTCAATGGGCGGCATAAGTAAGATTTCTTCCCATATATTTGCTTCACTTCAGCAAAATAACATGTCAATAACCAGTCTTCTAAGGTGGGTTTCTTCATCTTCACAGTGAAGTTATAATGGTGAAAAACTTTCTGATATGCATCCACACTGAAACATTGATGCTGAAGCTCATCTAGACGGTATACCACATCTCTGAATTCATCTCTTCCTTCCCCCTTGTCTCGN]




>consensus_5129#1
TTTTTTTTTTTTTTTGCAGCCTGCAAAAATAACTATTTATACGAGTGAATTTTTTTTAAC
AAACTGTTGGCCTGTCCATGAAGCTGCATGAACAATCAACACAATCTAGCTAAGCACAAT
CTTGACCTCAAACTTAAAAGATTTGAAATGTTTAACCAAATACACTATCAAATATTTCAT
CAATAGACTCCCCCAAAGGAACCCATTCATGGTCATCAAAGTCATCATCTCTCAAGTATA
TAAAGGGGCAACCGGTGTTGAAGTAGCCAACCTCAAATTCAACTTCATCATTATCAGGGT
GCTTCAAAGCAACCATCCCTTGATTCACGCAACCATGACAATAGCCATTGTCACGCGGCT
TCAATGGGCGGCATAAGTAAGATTTCTTCCCATATATTTGCTTCACTTCAGCAAAATAAC
ATGTCAATAACCAGTCTTCTAAGGTGGGTTTCTTCATCTTCACAGTGAAGTTATAATGGT
GAAAAACTTTCTGATATGCATCCACACTGAAACATTGATGCTGAAGCTCATCTAGACGGT
ATACCACATCTCTGAATTCATCTCTTCCTTCCCCCTTGTCTCGN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5129#0      TTTTTTTTTTTTTTCGGGATAATTTAAAGAGCATAATTAGGATGAGTTACATTGTTCTCA 60
consensus_5129#1      ----------------------------------------------------------TT 2
                                                                                  

consensus_5129#0      TGACTACTTCAATACAATGTGCCAACATCTTAACGAGCAACAACATACTACCAAAATCAA 120
consensus_5129#1      TTTTTTTTTTTTTGCAGCCTGCAAAAAT---AACTATT-----TATACGAGTGAATTTTT 54
                      *   *  **   * **   *** ** **   *** *        **** *   ** *   

consensus_5129#0      CAAAAATCATTGTTGCAGTCTTACAGGCCTAATATATATAGTTCACATATAAATATTTAG 180
consensus_5129#1      TTTAACAAACTGTTGGCCTGTCCATGAAGCTGCATGAACAATCAACACA-----ATCTAG 109
                         **   * *****   * *    *       **  * * *  *** *     ** ***

consensus_5129#0      CTATGCAAAATTATGACCTAAAACTCGAAAGATTTAACATGTTTAACCAAATATACCACT 240
consensus_5129#1      CTAAGCACAATCTTGACCTCAAACTTAAAAGATTTGAAATGTTTAACCAAATACACTATC 169
                      *** *** ***  ****** *****  ******** * *************** ** *  

consensus_5129#0      AAATATTTCCTTGATAGACTCCTCAAAAAAAACACGTTCATCATCATCAGAGTCATCATC 300
consensus_5129#1      AAATATTTCATCAATAGACTCCCCCAAAGGAACCCATTCATGGTCATCAAAGTCATCATC 229
                      ********* *  ********* * ***  *** * *****  ****** **********

consensus_5129#0      GCTCAAGAACATGAATGGGCAGCCGGTGTCAAAGAAGCCAACCTCATATTTAACTTCATC 360
consensus_5129#1      TCTCAAGTATATAAAGGGGCAACCGGTGTTGAAGTAGCCAACCTCAAATTCAACTTCATC 289
                       ****** * ** ** ***** *******  *** *********** *** *********

consensus_5129#0      ATTCGCAGGGTGCTTCAGAGCAACCATCCCTTGATTCACGCAACCATGACAATAGCCATC 420
consensus_5129#1      ATTATCAGGGTGCTTCAAAGCAACCATCCCTTGATTCACGCAACCATGACAATAGCCATT 349
                      ***  ************ ***************************************** 

consensus_5129#0      ATCATGTGATTTCACAGGCCAACATAAATAGAATTTCTTTCCGTATACTTGCTTCACTTC 480
consensus_5129#1      GTCACGCGGCTTCAATGGGCGGCATAAGTAAGATTTCTTCCCATATATTTGCTTCACTTC 409
                       *** * *  ****  ** *  ***** **  ******* ** **** ************

consensus_5129#0      AGCAAAATAACATGTCACTGACCAGTATTCGGAAGTGGGTTTCTTCATCTTCACTGTGAA 540
consensus_5129#1      AGCAAAATAACATGTCAATAACCAGTCTTCTAAGGTGGGTTTCTTCATCTTCACAGTGAA 469
                      ***************** * ****** ***  * ******************** *****

consensus_5129#0      GTTATAATGGTGAAAAATCTTCTGATATGCATCCACACTAAAACATTGATACTGAAGCTC 600
consensus_5129#1      GTTATAATGGTGAAAAACTTTCTGATATGCATCCACACTGAAACATTGATGCTGAAGCTC 529
                      *****************  ******************** ********** *********

consensus_5129#0      ATCTAGATGGTATACCACATCTCTGAGTTCATTTTTTCCTTCATATATTTTTCAAAGGCC 660
consensus_5129#1      ATCTAGACGGTATACCACATCTCTGAATTCATCTCTTCCTTCCCCCTTGTCTCGN----- 584
                      ******* ****************** ***** * *******     * * **       

consensus_5129#0      AACATGACTTCCTTGCTCATCCATCGTTTTCCGTTCTGAACAATTTCTTCTGTAGACAAA 720
consensus_5129#1      ------------------------------------------------------------
                                                                                  

consensus_5129#0      TTATGCCGTCCTACATCTTCAGCTGCAGGGGAAAGAGACTCTGAATCATGAGATGATTCA 780
consensus_5129#1      ------------------------------------------------------------
                                                                                  

consensus_5129#0      GCATCGAACTCACATGGATAAAGCTTAGATGATTCTGGTAACTCTACATTGGGCTGAGCA 840
consensus_5129#1      ------------------------------------------------------------
                                                                                  

consensus_5129#0      GCATCTTTGGGTGGGTCGCGGAAGCCATTTATCATAGCTGCGAAT 885
consensus_5129#1      ---------------------------------------------