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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1183 fasta sequence
[CACCGCCGCCTCCGCCTTCGCCGCCGCCATCGATCCTCATCCATCCCGCGAGCGAGCAGAGTCGCAGTAGCTCGTCCTGCTGCTTCCTCCGCCGCCGCCGACCCCCATCCATCCCGCGAGCGAGCAGGGTCGCCGTCGCTCGTCCTGTTGCTTCCGCCGCATCCATCCTGTAGGATCATGCCACTGCGAGAGGTCGCTGAACCGCAACCTGGGAATTGACCTCCCGACTTGGCAGGTGTTGGCTCCACTGCCACCTATTGACTCCCCCACGGTGCCCCTGTCATGGGCGACGAGGCCACGCAGGTCAGCGCCTCAAGCGCAGTAGCGGTCCATGCTCTGTGCTTCGCTGGGATCGTGGCAGCCCATCAATTGTCTGGCCGCGGCATGCTCGTCTCCAATCCCGCCTACGCCCTCCGCCTCCTCGTGGTCTTCGAAGCGCCTCTTGTCATCGCAGTGTTCAGTTTGCTCCGTCGAAATCCCAAGCGCTGCTCGTTTCTTAAGGCAGCTGCGCGAGGATTGCTTGGCCTCCCCATTGGTGCGTTCCTAAATGCATTTGGAGCAATTGTTCTTGGTGCACCCATTGGAATCAAGTACTGGGCAGCAACAACTTATTGGTCACTTCTCATGTCCTTGTTCACATTTGTTCCTGCAGCATGCGTATTTGGAGCATCCAAAGTGAATTGGCAGGCTGTGCTCTCTCATTCCATTTATTGCGGATCAACTGATTCAGTGGACTACATGATATCTGCACCTGCTCATGGAGCTGTAATAGGAGCATGGCTTGGTGCTTGGCCTATGCCTCTCGACTGGGAAAGACCTTGGCAGGAATGGCCAATCTCTGTTACTTATGGCTCAGTCGCTGGGCATTTGATTGGAATGGCAATATCACTGGCCCTAGTAGTTACTCATAAGAGAAGAGGTCGTGCCAAAGCTGACTAGCTAGCCTATGGATGACAAGTGCCCTTGCTTTTTCCTGGCCATCAGTGATTTTTCCCGATAGTGTACAAGTATTCTTTTTTTGGGACCAGAGAGCTTTCATATTGAATATAAGGAGTGATGGCTTACGATAGGATCATCCAAGTTCTACGTTGTTGACTCGTTCATCTGGAACCTTTTGCAGCTAAATCCAGATTTATGTCATTTAGCTTTCATATATTGAATATAAGCAGTGATGGCTTACGAT]
[+] EMBL AK073895 [CACCGCCGCCTCCGCCTTCGCCGCCGCCATCGATCCTCATCCATCCCGCGAGCGAGCAGAGTCGCAGTAGCTCGTCCTGCTGCTTCCTCCGCCGCCGCCGACCCCCATCCATCCCGCGAGCGAGCAGGGTCGCCGTCGCTCGTCCTGTTGCTTCCGCCGCATCCATCCTGTAGGATCATGCCACTGCGAGAGGTCGCTGAACCGCAACCTGGGAATTGACCTCCCGACTTGGCAGGTGTTGGCTCCACTGCCACCTATTGACTCCCCCACGGTGCCCCTGTCATGGGCGACGAGGCCACGCAGGTCAGCGCCTCAAGCGCAGTAGCGGTCCATGCTCTGTGCTTCGCTGGGATCGTGGCAGCCCATCAATTGTCTGGCCGCGGCATGCTCGTCTCCAATCCCGCCTACGCCCTCCGCCTCCTCGTGGTCTTCGAAGCGCCTCTTGTCATCGCAGTGTTCAGTTTGCTCCGTCGAAATCCCAAGCGCTGCTCGTTTCTTAAGGCAGCTGCGCGAGGATTGCTTGGCCTCCCCATTGGTGCGTTCCTAAATGCATTTGGAGCAATTGTTCTTGGTGCACCCATTGGAATCAAGTACTGGGCAGCAACAACTTATTGGTCACTTCTCATGTCCTTGTTCACATTTGTTCCTGCAGCATGCGTATTTGGAGCATCCAAAGTGAATTGGCAGGCTGTGCTCTCTCATTCCATTTATTGCGGATCAACTGATTCAGTGGACTACATGATATCTGCACCTGCTCATGGAGCTGTAATAGGAGCATGGCTTGGTGCTTGGCCTATGCCTCTCGACTGGGAAAGACCTTGGCAGGAATGGCCAATCTCTGTTACTTATGGCTCAGTCGCTGGGCATTTGATTGGAATGGCAATATCACTGGCCCTAGTAGTTACTCATAAGAGAAGAGGTCGTGCCAAAGCTGACTAGCTAGCCTATGGATGACAAGTGCCCTTGCTTTTTCCTGGCCATCAGTGATTTTTCCCGATAGTGTACAAGTATTCTTTTTTTGGGACCAGAGAGCTTTCATATTGAATATAAGGAGTGATGGCTTACGATAGGATCATCCAAGTTCTACGTTGTTGACTCGTTCATCTGGAACCTTTTGCAGCTAAATCCAGATTTATGTCATTTAGCTTTCATATATTGAATATAAGCAGTGATGGCTTACGAT]
consensusID : consensus_5142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence
[GCAGGANTCCGCATAGTGCCCTGTCATGGGCGANGAAGGCACGCAAGTCAGCGCCTCNAGCGCAGTAGCGGTCCATGCTCTGTGCTTCGCTGGGATCGTGGCANCCCATCAATTGTCTGGCCGCGGCATGCTCGTCTCCAATCCCGCCTACGCCCTCCGCCTCCTCNTGGTCTTCGAANCGCCTCTTGTCATCNCAATGTTCAATTTGCTCCGTCCAAATCCCAANCGCTGCTCGTTTCTTAANGCAGCTGCGCNAAGATTGCTTGGCCTCCCCNTTGGTGCGTTCCNAAATGCATTTGGANCAATTGTTCTTGGTGCACCCATTGGAATCAAATNCTGGGCAGCAACAACTTATTGGTCACTTCTCATGTCCTTGTTCACATTTGTTCCTGCAACATGCGTNTTTGGANCATCCAAAATGAATTGGCANGNGGTGCTCTCTCNTTCCATTTATTGGGGGATCAACTGATTCAGTGGANTACATGATATCTGCACCTGCTCATGGANCTGTTATAAGAACATNGCTTGGTGCTTGGGCTATGCCTCTCCACTGGGAAANAACTTGGCANGAATGGCCNATC]
[+] EMBL BE228375 [GCAGGANTCCGCATAGTGCCCTGTCATGGGCGANGAAGGCACGCAAGTCAGCGCCTCNAGCGCAGTAGCGGTCCATGCTCTGTGCTTCGCTGGGATCGTGGCANCCCATCAATTGTCTGGCCGCGGCATGCTCGTCTCCAATCCCGCCTACGCCCTCCGCCTCCTCNTGGTCTTCGAANCGCCTCTTGTCATCNCAATGTTCAATTTGCTCCGTCCAAATCCCAANCGCTGCTCGTTTCTTAANGCAGCTGCGCNAAGATTGCTTGGCCTCCCCNTTGGTGCGTTCCNAAATGCATTTGGANCAATTGTTCTTGGTGCACCCATTGGAATCAAATNCTGGGCAGCAACAACTTATTGGTCACTTCTCATGTCCTTGTTCACATTTGTTCCTGCAACATGCGTNTTTGGANCATCCAAAATGAATTGGCANGNGGTGCTCTCTCNTTCCATTTATTGGGGGATCAACTGATTCAGTGGANTACATGATATCTGCACCTGCTCATGGANCTGTTATAAGAACATNGCTTGGTGCTTGGGCTATGCCTCTCCACTGGGAAANAACTTGGCANGAATGGCCNATC]
consensusID : consensus_5142#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence
[GGCTGAAGGAGTAGAAAGACTACATGATATCTGCGCCTGCTCATGGAGCTGTAATAGAAGCAAGGCTTGGTGCTTGGCCTATGCCTCTCGACTGGGAAAGACCTTGGCAGGAATGGCCAATATCTGTGACTTATGGGTCAGTCGCTGGGCATTTGATTGGAATGGCAATATCACTGGCCCTAGTAGTTACTCATAAGAGAAGAGGTCGTGCCAAAGATGACTAGATAGCCTATGGATGACAAGTGCCCCTGCTTTTTCTTGGCCATCAGTGATTTTTCCCGATAGTGTGCAAGTATTCTTTTTTTGGGGCCAGAGAGAAATAAAATTGAATATAAGGAGTGATGGCTTACGATAGGATCATACAAGTTTTACGTTGTTGACTCGTTCATATGGAACCCTTTGCAGATAAATCCAGATTTATGTCATTTAGCTTTCATATATTGAATATAAGCAGTGATGGCTTACGATAGGATCGTCCAGATTTTACTTTGTGGACTCTAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGACAG]
[-] EMBL CF332006 [GGCTGAAGGAGTAGAAAGACTACATGATATCTGCGCCTGCTCATGGAGCTGTAATAGAAGCAAGGCTTGGTGCTTGGCCTATGCCTCTCGACTGGGAAAGACCTTGGCAGGAATGGCCAATATCTGTGACTTATGGGTCAGTCGCTGGGCATTTGATTGGAATGGCAATATCACTGGCCCTAGTAGTTACTCATAAGAGAAGAGGTCGTGCCAAAGATGACTAGATAGCCTATGGATGACAAGTGCCCCTGCTTTTTCTTGGCCATCAGTGATTTTTCCCGATAGTGTGCAAGTATTCTTTTTTTGGGGCCAGAGAGAAATAAAATTGAATATAAGGAGTGATGGCTTACGATAGGATCATACAAGTTTTACGTTGTTGACTCGTTCATATGGAACCCTTTGCAGATAAATCCAGATTTATGTCATTTAGCTTTCATATATTGAATATAAGCAGTGATGGCTTACGATAGGATCGTCCAGATTTTACTTTGTGGACTCTAAAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATCGTTGACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5142#0 CACCGCCGCCTCCGCCTTCGCCGCCGCCATCGATCCTCATCCATCCCGCGAGCGAGCAGA 60
consensus_5142#1 ------------------------------------------------------------
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 GTCGCAGTAGCTCGTCCTGCTGCTTCCTCCGCCGCCGCCGACCCCCATCCATCCCGCGAG 120
consensus_5142#1 ------------------------------------------------------------
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 CGAGCAGGGTCGCCGTCGCTCGTCCTGTTGCTTCCGCCGCATCCATCCTGTAGGATCATG 180
consensus_5142#1 ------------------------------------------------------------
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 CCACTGCGAGAGGTCGCTGAACCGCAACCTGGGAATTGACCTCCCGACTTGGCAGGTGTT 240
consensus_5142#1 ------------------------------------------------------------
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 GGCTCCACTGCCACCTATTGACTCCCCCACGGTGCCCCTGTCATGGGCGACGAGGCCACG 300
consensus_5142#1 ----------------GCAGGANTCCGCATAGTGCCC-TGTCATGGGCGANGAAGGCACG 43
consensus_5142#2 ----------------GGCTGAAGGAGTAGAAAGACTACATGATAT-CTGCGCCTGCTCA 43
* * * * ** * * * *
consensus_5142#0 CAGGTCAGCGCCTCAAGCGCAGTAGCGGTCCATGCTCTGTGCTTCGCTGGGATCGTGGCA 360
consensus_5142#1 CAAGTCAGCGCCTCNAGCGCAGTAGCGGTCCATGCTCTGTGCTTCGCTGGGATCGTGGCA 103
consensus_5142#2 TGGAGCTGTAATAGAAGCAAGGCT-TGGTGCTTGGCCTATGCCTCTC---GACTGGGAAA 99
* * *** * *** * ** ** *** ** * ** * * *
consensus_5142#0 GCCCATCAATTGTCTGGCCGCGGCATGCTCGTCTCCAATCCCGCCTACGCCCTCCGCCTC 420
consensus_5142#1 NCCCATCAATTGTCTGGCCGCGGCATGCTCGTCTCCAATCCCGCCTACGCCCTCCGCCTC 163
consensus_5142#2 GACCTTGGCAGGAATGGCCAATATCTG-TGACTTATGGGTCAGTCGCTGGGCATTTGATT 158
** * * ***** ** * * * * * * * *
consensus_5142#0 CTCGTGGTCTTCGAAGCGCCTCTTGTCATCGCA-GTGTTCAGTTTGCTCCGTCGAAATCC 479
consensus_5142#1 CTCNTGGTCTTCGAANCGCCTCTTGTCATCNCA-ATGTTCAATTTGCTCCGTCCAAATCC 222
consensus_5142#2 GGAATGGCAATATCACTGGCCCTAGTAGTTACTCATAAGAGAAGAGGTCGTGCCAAAGAT 218
*** * * * * ** ** * * * * ** * ***
consensus_5142#0 CAAGCGCTGCTCGTTTCTTAAGGCAGCTGCGCGAGGATTGCTTGGCCTCCCCATTGGTGC 539
consensus_5142#1 CAANCGCTGCTCGTTTCTTAANGCAGCTGCGCNAAGATTGCTTGGCCTCCCCNTTGGTGC 282
consensus_5142#2 GACTAGATAGCCTATGGATGACA-AGTGCCCCTGCTTTTTCTTGGCCATC--AGTGATTT 275
* * * * * * * ** * * ** ******* * ** *
consensus_5142#0 GTTCCTAAATGCATTTGGAGCAATTGTTCTTGGTGCACCCATTGGAATCAAGTACTGGGC 599
consensus_5142#1 GTTCCNAAATGCATTTGGANCAATTGTTCTTGGTGCACCCATTGGAATCAAATNCTGGGC 342
consensus_5142#2 TTCCCGATA---GTGTGCAAGTATTCTTTTTTTGGGGCCAGAGAGAAATAAA-ATTGAAT 331
* ** * * * ** * *** ** ** * ** *** ** **
consensus_5142#0 AGCAACAACTTATTGGTCACTTCTCATGTCCTTGTTCACATTT---GTTCCTGCAGCATG 656
consensus_5142#1 AGCAACAACTTATTGGTCACTTCTCATGTCCTTGTTCACATTT---GTTCCTGCAACATG 399
consensus_5142#2 ATAAGGAG-----TGATGGCTTACGATAGGATCATACAAGTTTTACGTTGTTGACTCGTT 386
* * * ** * *** ** * * ** *** *** ** * *
consensus_5142#0 CGTATTTGGAGCATCCAAAGTGAATTGGCAGGCTGTGCTCTCTCATTCCATTTATTGCGG 716
consensus_5142#1 CGTNTTTGGANCATCCAAAATGAATTGGCANGNGGTGCTCTCTCNTTCCATTTATTGGGG 459
consensus_5142#2 CATATGGAACCCTTTGCAGATAAATCCAGATTTATGTCATTTAGCTTTCATATATTGAAT 446
* * * * * * * *** * * * ** *** *****
consensus_5142#0 -ATCAACTGATTCAGTGGACTACATGAT-ATCTGCACCTGCTCATGGAGCTGTAATAGGA 774
consensus_5142#1 GATCAACTGATTCAGTGGANTACATGAT-ATCTGCACCTGCTCATGGANCTGTTATAAGA 518
consensus_5142#2 -ATAAGCAGTGATGGCTTACGATAGGATCGTCCAGATTTTACTTTGTGGACTCTAAAAAA 505
** * * * * * * * *** ** * * ** * * *
consensus_5142#0 GCATGGCTTGGTGCTTGGCCTATGCCTCTCGACTGGGAAAGACCTTGGCAGGAATGGCCA 834
consensus_5142#1 ACATNGCTTGGTGCTTGGGCTATGCCTCTCCACTGGGAAANAACTTGGCANGAATGGCCN 578
consensus_5142#2 AAAAAAAAAAACAAT---GTCATGCCGTTACGTAGCGTATCG--TTGACAG--------- 551
* * ***** * * * * *** **
consensus_5142#0 ATCTCTGTTACTTATGGCTCAGTCGCTGGGCATTTGATTGGAATGGCAATATCACTGGCC 894
consensus_5142#1 ATC--------------------------------------------------------- 581
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 CTAGTAGTTACTCATAAGAGAAGAGGTCGTGCCAAAGCTGACTAGCTAGCCTATGGATGA 954
consensus_5142#1 ------------------------------------------------------------
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 CAAGTGCCCTTGCTTTTTCCTGGCCATCAGTGATTTTTCCCGATAGTGTACAAGTATTCT 1014
consensus_5142#1 ------------------------------------------------------------
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 TTTTTTGGGACCAGAGAGCTTTCATATTGAATATAAGGAGTGATGGCTTACGATAGGATC 1074
consensus_5142#1 ------------------------------------------------------------
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 ATCCAAGTTCTACGTTGTTGACTCGTTCATCTGGAACCTTTTGCAGCTAAATCCAGATTT 1134
consensus_5142#1 ------------------------------------------------------------
consensus_5142#2 ------------------------------------------------------------
consensus_5142#0 ATGTCATTTAGCTTTCATATATTGAATATAAGCAGTGATGGCTTACGAT 1183
consensus_5142#1 -------------------------------------------------
consensus_5142#2 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||