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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1471 fasta sequence
[AGGCGGCGGCGGCGGCTGTAGAGAGGCAGCCGAGGAGCGCCGCGGCGGCGGCGAAGGAGGAGGAGGAGGAGACCAATCTCGAGTGCTTCATCGCGTCCACGGCCGTCCGCGTTCCCGCGCATCGGCTCCCCCGGACGAGCTCGAGCTCGCGGGAGAGGGGAGCGGCCGGGGCGCCGCCGTACTACGAGCTCGCGGATCTGTGGGAGGCGTTCGCGGAGTGGAGCGCCTATGGCGCCGGCGTGCCGCTCCTGCTCAATGGCACGGACGGCGTCGTGCAGTACTACGTCCCCTCCCTGTCGGCTATCCAGCTGTTCGCTGCCCGGCCGCCGTCGTCAACCTCAGGTAGACTTGGTGAAGATAGTGATGGTGAGAGTGCTCAGGATATGAGCAGTGAGAGCGACCATGAGCATTTAAGATGCCGATGTTTAGTTAACAGTATTTCTGCAGATCAAGATGGTTTCTCCAGTGATGATAGTGAGTCTGGCAACCAGGAATTGTACCCTGTTTTCCAATATATGGAGCATGATGCACCATATGGAAGACAACCTTTAGCAGACATGATATCATTACTTGCTAATAGATTTCCTGATTTAAGAACATATAAGAGCTGTGATCTTCTACCATCCAGTTGGATTTCTGTAGCATGGTATCCCATATACAGGATACCGACAGGACCAACATTGAAAGATTTGGATGCTTGCTTTTTAACATTCCATTCACTATCTACACCAGCGGAAGGTACACTAAGTGGGCATCCTGAGACAAATGTTTTCCATGATAGCAAAATTTATGATGTTCCTGGAAAGGTCACACTGCCTCTCATTGGTCTAGCATCACACAAGTTTAATGGTTCCATGTGGACATCAAATCAAGAGCATGAGCAACAGTTAACTAAGTCGCTCCTGAAAGCTGCAGATGACTGGCTTTGCCAGCGGCGAGTCAATCATCCCGATTACCGCTTCTTCCTTTCACACTAATACACATGTTTGTGAAAGTTCCCTGCGTTTTGGCAAATAGCTCAGCCAGATGCCCACTAATTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCACTGATATCATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTCATAGCCCCATATTTATTTTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTAGTTAGATAGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTATGTGGCAGAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATATAGTGATGATGATGATAAAGTATTTCAACATTTTGTTTTAATTGGGATATGTTTGCTCTTTTGTGCCTGCATGGGTTTGAGATTACTGTAACTTATAATTGATATTTAAAGGGTGAGAATAAAGTGATATATGGTTGAAGCATCTAAAAAGA]
[+] EMBL AK107306 [AGGCGGCGGCGGCGGCTGTAGAGAGGCAGCCGAGGAGCGCCGCGGCGGCGGCGAAGGAGGAGGAGGAGGAGACCAATCTCGAGTGCTTCATCGCGTCCACGGCCGTCCGCGTTCCCGCGCATCGGCTCCCCCGGACGAGCTCGAGCTCGCGGGAGAGGGGAGCGGCCGGGGCGCCGCCGTACTACGAGCTCGCGGATCTGTGGGAGGCGTTCGCGGAGTGGAGCGCCTATGGCGCCGGCGTGCCGCTCCTGCTCAATGGCACGGACGGCGTCGTGCAGTACTACGTCCCCTCCCTGTCGGCTATCCAGCTGTTCGCTGCCCGGCCGCCGTCGTCAACCTCAGGTAGACTTGGTGAAGATAGTGATGGTGAGAGTGCTCAGGATATGAGCAGTGAGAGCGACCATGAGCATTTAAGATGCCGATGTTTAGTTAACAGTATTTCTGCAGATCAAGATGGTTTCTCCAGTGATGATAGTGAGTCTGGCAACCAGGAATTGTACCCTGTTTTCCAATATATGGAGCATGATGCACCATATGGAAGACAACCTTTAGCAGACATGATATCATTACTTGCTAATAGATTTCCTGATTTAAGAACATATAAGAGCTGTGATCTTCTACCATCCAGTTGGATTTCTGTAGCATGGTATCCCATATACAGGATACCGACAGGACCAACATTGAAAGATTTGGATGCTTGCTTTTTAACATTCCATTCACTATCTACACCAGCGGAAGGTACACTAAGTGGGCATCCTGAGACAAATGTTTTCCATGATAGCAAAATTTATGATGTTCCTGGAAAGGTCACACTGCCTCTCATTGGTCTAGCATCACACAAGTTTAATGGTTCCATGTGGACATCAAATCAAGAGCATGAGCAACAGTTAACTAAGTCGCTCCTGAAAGCTGCAGATGACTGGCTTTGCCAGCGGCGAGTCAATCATCCCGATTACCGCTTCTTCCTTTCACACTAATACACATGTTTGTGAAAGTTCCCTGCGTTTTGGCAAATAGCTCAGCCAGATGCCCACTAATTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCACTGATATCATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTCATAGCCCCATATTTATTTTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTAGTTAGATAGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTATGTGGCAGAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATATAGTGATGATGATGATAAAGTATTTCAAC ]
[-] EMBL CB653745 [ CAAAATTTATGATGTTCCTGGAAAGGTCACACTGCCTCTCATTGGTCTAGCATCACACAAGTTTAATGGTTCCATGTGGACATCAAATCAAGAGCATGAGCAACAGTTAACTAAGTCGCTCCTGAAAGCTGCAGATGACTGGCTTTGCCAGCGGCGAGTCAATCATCCCGATTACCGCTTCTTCCTTTCACACTAATACACATGTTTGTGAAAGTTCCCTGCGTTTTGGCAAATAGCTCAGCCAGATGCCCACTAATTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCACTGATATCATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTTATAGCCCCATATTTATTTTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTAGTTAGATAGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTATGTGGCAGAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATATAGTGATGATGATGATAAAGTATTTCAACATTTTGTTTTAATTGGGATATGTTTGCTCTTTTGTGCCTGCATGGGTTTGAGATTACTGTAACTTATAATTGATATTTAAAGGGTGAGAATAAAGTGATATATGGTTGAAGCATCTAAAAAGA]
consensusID : consensus_5144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[TTAACAGTATTTCTGCAGATCAAGATGGTTTCTCCAGTGATGATAGTGAGTCTGGCAACCAGGAATTGTACCCTGTTTTCCAATATATGGAGCATGATGCACCATATGGAAGACAACCTTTAGCAGACATGATATCATTACTTGCTAATAGATTTCCTGATTTAAGAACATATAAGAGCTGTGATCTTCTACCATCCAGTTGGATTTCTGTAGCATGGTATCCCATATACAGGATACCGACAGGACCAACATTGAAAGATTTGGATGCTTGCTTTTTAACATTCCATTCACTATCTACACCAGCGGAAGGTACACTAATTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCACTGATATCATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTTATAGCCCCATATTTATTTTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTAGTTAGATAGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTATGTGGCAGAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATATAGTGATGATGATGATAAAGTATTTCAACATTTTGTTTTAATTGGGATATGTTTGCTCTAAAAAAAA]
[-] EMBL CA760104 [TTAACAGTATTTCTGCAGATCAAGATGGTTTCTCCAGTGATGATAGTGAGTCTGGCAACCAGGAATTGTACCCTGTTTTCCAATATATGGAGCATGATGCACCATATGGAAGACAACCTTTAGCAGACATGATATCATTACTTGCTAATAGATTTCCTGATTTAAGAACATATAAGAGCTGTGATCTTCTACCATCCAGTTGGATTTCTGTAGCATGGTATCCCATATACAGGATACCGACAGGACCAACATTGAAAGATTTGGATGCTTGCTTTTTAACATTCCATTCACTATCTACACCAGCGGAAGGTACACTAATTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCACTGATATCATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTTATAGCCCCATATTTATTTTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTAGTTAGATAGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTATGTGGCAGAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATATAGTGATGATGATGATAAAGTATTTCAACATTTTGTTTTAATTGGGATATGTTTGCTCTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5144#0 AGGCGGCGGCGGCGGCTGTAGAGAGGCAGCCGAGGAGCGCCGCGGCGGCGGCGAAGGAGG 60
consensus_5144#1 ------------------------------------------------------------
consensus_5144#0 AGGAGGAGGAGACCAATCTCGAGTGCTTCATCGCGTCCACGGCCGTCCGCGTTCCCGCGC 120
consensus_5144#1 ------------------------------------------------------------
consensus_5144#0 ATCGGCTCCCCCGGACGAGCTCGAGCTCGCGGGAGAGGGGAGCGGCCGGGGCGCCGCCGT 180
consensus_5144#1 ------------------------------------------------------------
consensus_5144#0 ACTACGAGCTCGCGGATCTGTGGGAGGCGTTCGCGGAGTGGAGCGCCTATGGCGCCGGCG 240
consensus_5144#1 ------------------------------------------------------------
consensus_5144#0 TGCCGCTCCTGCTCAATGGCACGGACGGCGTCGTGCAGTACTACGTCCCCTCCCTGTCGG 300
consensus_5144#1 ------------------------------------------------------------
consensus_5144#0 CTATCCAGCTGTTCGCTGCCCGGCCGCCGTCGTCAACCTCAGGTAGACTTGGTGAAGATA 360
consensus_5144#1 ------------------------------------------------------------
consensus_5144#0 GTGATGGTGAGAGTGCTCAGGATATGAGCAGTGAGAGCGACCATGAGCATTTAAGATGCC 420
consensus_5144#1 ------------------------------------------------------------
consensus_5144#0 GATGTTTAGTTAACAGTATTTCTGCAGATCAAGATGGTTTCTCCAGTGATGATAGTGAGT 480
consensus_5144#1 ---------TTAACAGTATTTCTGCAGATCAAGATGGTTTCTCCAGTGATGATAGTGAGT 51
***************************************************
consensus_5144#0 CTGGCAACCAGGAATTGTACCCTGTTTTCCAATATATGGAGCATGATGCACCATATGGAA 540
consensus_5144#1 CTGGCAACCAGGAATTGTACCCTGTTTTCCAATATATGGAGCATGATGCACCATATGGAA 111
************************************************************
consensus_5144#0 GACAACCTTTAGCAGACATGATATCATTACTTGCTAATAGATTTCCTGATTTAAGAACAT 600
consensus_5144#1 GACAACCTTTAGCAGACATGATATCATTACTTGCTAATAGATTTCCTGATTTAAGAACAT 171
************************************************************
consensus_5144#0 ATAAGAGCTGTGATCTTCTACCATCCAGTTGGATTTCTGTAGCATGGTATCCCATATACA 660
consensus_5144#1 ATAAGAGCTGTGATCTTCTACCATCCAGTTGGATTTCTGTAGCATGGTATCCCATATACA 231
************************************************************
consensus_5144#0 GGATACCGACAGGACCAACATTGAAAGATTTGGATGCTTGCTTTTTAACATTCCATTCAC 720
consensus_5144#1 GGATACCGACAGGACCAACATTGAAAGATTTGGATGCTTGCTTTTTAACATTCCATTCAC 291
************************************************************
consensus_5144#0 TATCTACACCAGCGGAAGGTACACTAAGTGGGCATCCTGAGACAAATGTTTTCCATGATA 780
consensus_5144#1 TATCTACACCAGCGGAAGGTACACTAA--------------------------------- 318
***************************
consensus_5144#0 GCAAAATTTATGATGTTCCTGGAAAGGTCACACTGCCTCTCATTGGTCTAGCATCACACA 840
consensus_5144#1 ------------------------------------------------------------
consensus_5144#0 AGTTTAATGGTTCCATGTGGACATCAAATCAAGAGCATGAGCAACAGTTAACTAAGTCGC 900
consensus_5144#1 ------------------------------------------------------------
consensus_5144#0 TCCTGAAAGCTGCAGATGACTGGCTTTGCCAGCGGCGAGTCAATCATCCCGATTACCGCT 960
consensus_5144#1 ------------------------------------------------------------
consensus_5144#0 TCTTCCTTTCACACTAATACACATGTTTGTGAAAGTTCCCTGCGTTTTGGCAAATAGCTC 1020
consensus_5144#1 ------------------------------------------------------------
consensus_5144#0 AGCCAGATGCCCACTAATTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCAC 1080
consensus_5144#1 -----------------TTAAGTGATGAACTTAACATACTGCCATTGAGTCCACGGGCAC 361
*******************************************
consensus_5144#0 TGATATCATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTCATAGCCCCAT 1140
consensus_5144#1 TGATATCATTATCTCTTTTTTTATTATTATTATGGGGCTTCATTTATGTTATAGCCCCAT 421
************************************************* **********
consensus_5144#0 ATTTATTTTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTA 1200
consensus_5144#1 ATTTATTTTTACCTAGATCTGCTTAGTTCACTGGTATTTTGGGTTACTTTATAGTAACTA 481
************************************************************
consensus_5144#0 GTTAGATAGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTA 1260
consensus_5144#1 GTTAGATAGGGGTCACCAGAATTATTTAGCATCTCGTAAGATGCTTTTGAGTGGATGGTA 541
************************************************************
consensus_5144#0 TGTGGCAGAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATAT 1320
consensus_5144#1 TGTGGCAGAGCTAGGTAGGCAGTGAGTGGTTAGAGATGTATATCGGTCTGCTTCAGATAT 601
************************************************************
consensus_5144#0 AGTGATGATGATGATAAAGTATTTCAACATTTTGTTTTAATTGGGATATGTTTGCTCTTT 1380
consensus_5144#1 AGTGATGATGATGATAAAGTATTTCAACATTTTGTTTTAATTGGGATATGTTTGCTCTAA 661
**********************************************************
consensus_5144#0 TGTGCCTGCATGGGTTTGAGATTACTGTAACTTATAATTGATATTTAAAGGGTGAGAATA 1440
consensus_5144#1 AAAAAA------------------------------------------------------ 667
consensus_5144#0 AAGTGATATATGGTTGAAGCATCTAAAAAGA 1471
consensus_5144#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||