These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1147 fasta sequence [GTGGTGCAGTTGCTGGCGTTGCACACGACTACGTAATACGTAGGCGAGATTTCTGCAGCGACGATGGAGCTGAAATCCGCCGTGCTCGCCGTCGCGGCGCTGTGCCTCGCGCTCGCGCTCCTGCTCCCGCGCGTCGCGCTG-TCACAGAGGCTAGCTACAGCGGACGCCCCCGCGCCGGCGCCGGCGCCGCGCCACGTCGACCTCGCCGAGCTGCTCTCCCTCGCCGGGCCGTACGGCACGTTCCTGGGCTACCTCACCAAGACGGGCGTGATCACGACGTTCCAGAGCCAGGCCAACGACACCGCCGCCGGCGCCCCCGGCGTCACCGTGTTCGCCCCCGAGGACTCGGCGTTCGCGGCCGTCGGCGGCGGCGCCGCGCTGTCCAACCTCACCGCCGACCAGCTCCGCACGCTCATGCTGTGCCACGGGGTGCCCCGGTACCACCCGCTCTCGTCGTTCTCGGCGCTGGCCGCGTCGGGCCCGGCGCCCACGTTCGCCGGCGGGCAGCAGTACGCCGTGAACGTCACTGACGCCGCCGGGACGGTCCGCATCCAGTCCGGCTGGGCCACCGCGAAGCTCGTCAGCAGCGTGTACTCGACGTCGCCCGTGGCGGTGTACGCGCTGAACAGGGTGCTGCTGCCGGAGCAGATCTTCCCGACCGCCCCTAAGGTCGCACCCGTGCCGGCCCCGGCCCCGGCGCCGGTGCACGGGGACAAGGCGAACGACGGCGCACCGGGCGCAGGCGAGCTTGGCGCCTCGGACGTTAAGAGTTCGTCGTGCCGGGTTGGCGCCGGGCGCCTTCTCGCCATCTTGGCTGTAATGGTATCCAGTTTTTCTGATGATATAGTGGTGTGATTTTTTTTTTTTTGGCGTGGGTACATATATACAGTACTTCCCTCGTTTCATAATGTAATACTTTCTACCATTAACCACATTCATTTAGATGTTAATGAATCTAGACATATGCATGTATTTAGATTCATTAACATTTATATGTATGTGGGCAATGGTAAAAAGTCTTACATTGTGAAACGGAGGGAGTAATGTTTATGTTTTTTGTCAATTCGTTTGTCGCATCTCTGTATGTAAACATTCATTTTGCATGAACATATCTGCAAATAACATTTTCTGGCAGTTTAAACGAAAT] [+] EMBL AK110545 [GTGGTGCAGTTGCTGGCGTTGCACACGACTACGTAATACGTAGGCGAGATTTCTGCAGCGACGATGGAGCTGAAATCCGCCGTGCTCGCCGTCGCGGCGCTGTGCCTCGCGCTCGCGCTCCTGCTCCCGCGCGTCGCGCTG TCACAGAGGCTAGCTACAGCGGACGCCCCCGCGCCGGCGCCGGCGCCGCGCCACGTCGACCTCGCCGAGCTGCTCTCCCTCGCCGGGCCGTACGGCACGTTCCTGGGCTACCTCACCAAGACGGGCGTGATCACGACGTTCCAGAGCCAGGCCAACGACACCGCCGCCGGCGCCCCCGGCGTCACCGTGTTCGCCCCCGAGGACTCGGCGTTCGCGGCCGTCGGCGGCGGCGCCGCGCTGTCCAACCTCACCGCCGACCAGCTCCGCACGCTCATGCTGTGCCACGGGGTGCCCCGGTACCACCCGCTCTCGTCGTTCTCGGCGCTGGCCGCGTCGGGCCCGGCGCCCACGTTCGCCGGCGGGCAGCAGTACGCCGTGAACGTCACTGACGCCGCCGGGACGGTCCGCATCCAGTCCGGCTGGGCCACCGCGAAGCTCGTCAGCAGCGTGTACTCGACGTCGCCCGTGGCGGTGTACGCGCTGAACAGGGTGCTGCTGCCGGAGCAGATCTTCCCGACCGCCCCTAAGGTCGCACCCGTGCCGGCCCCGGCCCCGGCGCCGGTGCACGGGGACAAGGCGAACGACGGCGCACCGGGCGCAGGCGAGCTTGGCGCCTCGGACGTTAAGAGTTCGTCGTGCCGGGTTGGCGCCGGGCGCCTTCTCGCCATCTTGGCTGTAATGGTATCCAGTTTTTCTGATGATATAGTGGTGTGATTTTTTTTTTTTTGGCGTGGGTACATATATACAGTACTTCCCTCGTTTCATAATGTAATACTTTCTACCATTAACCACATTCATTTAGATGTTAATGAATCTAGACATATGCATGTATTTAGATTCATTAACATTTATATGTATGTGGGCAATGGTAAAAAGTCTTACATTGTGAAACGGAGGGAGTAATGTTTATGTTTTTTGTCAATTCGTTTGTCGCATCTCTGTATGTAAACATTCATTTTGCATGAACATATCTGCAAATAACATTTTCTGGCAGTTTAAACGAAAT] [+] EMBL OSR24441A [ ccGTGCAGTTGCTGGCGTTGCACACGACTACGTAATACGTAGGCGAGATTTCTGCAGCGACGATGGAGCTGAAATCCGCCGTGCTCGCCGTCGCGGCGCTGTGCCTCGCGCTCGCGCTCCTGCTCCCGCGCGTCG GCTGATCACAGAGGCTAGCTACAGCGGACGCCCCCGCGCCGGCGCCGGCG CGCGCCACGTCGACCTCGCCGAGCTGC ] consensusID : consensus_5146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [GTCGCACCCGTGCCGGCCCCGGCCCCGGCGCCGGTGCACGGGGACAAGGCGAACGACGGCGCACCGGGCGCAGGCGAGCTTGGCGCCTCGGACGTCAAGAGTTCGTCGTGCCGGGTTGGCGCCGGGCGCCTTCTCGCCATCTTGGCTGTAATGGTATCCAGTTTTTCTGATGATATAGTGGTGTGATTTTTTTTTTTTTGGCGTGGGTACATATATACAGTACTTCCCTCGTTTCATAATGTAATACTTTCTACCATTAACATTTATATGTATGTGGGCAATGGTAAAAAGTCTTACATTGTGAAACGGAGGGAGTAATGTTTATGTTTTTTGTCAATTCGTTTGTCGCATCTCTGTATGTAAACATTCATTTTGCATGAACATATCTGCAAATAACATTTTCTGGCAGTTTAAACGAAATAAGATTCTACAAAAAA] [+] EMBL AU173368 [GTCGCACCCGTGCCGGCCCCGGCCCCGGCGCCGGTGCACGGGGACAAGGCGAACGACGGCGCACCGGGCGCAGGCGAGCTTGGCGCCTCGGACGTCAAGAGTTCGTCGTGCCGGGTTGGCGCCGGGCGCCTTCTCGCCATCTTGGCTGTAATGGTATCCAGTTTTTCTGATGATATAGTGGTGTGATTTTTTTTTTTTTGGCGTGGGTACATATATACAGTACTTCCCTCGTTTCATAATGTAATACTTTCTACCATTAACATTTATATGTATGTGGGCAATGGTAAAAAGTCTTACATTGTGAAACGGAGGGAGTAATGTTTATGTTTTTTGTCAATTCGTTTGTCGCATCTCTGTATGTAAACATTCATTTTGCATGAACATATCTGCAAATAACATTTTCTGGCAGTTTAAACGAAATAAGATTCTACAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5146#0 GTGGTGCAGTTGCTGGCGTTGCACACGACTACGTAATACGTAGGCGAGATTTCTGCAGCG 60 consensus_5146#1 ------------------------------------------------------------ consensus_5146#0 ACGATGGAGCTGAAATCCGCCGTGCTCGCCGTCGCGGCGCTGTGCCTCGCGCTCGCGCTC 120 consensus_5146#1 ------------------------------------------------------------ consensus_5146#0 CTGCTCCCGCGCGTCGCGCTGTCACAGAGGCTAGCTACAGCGGACGCCCCCGCGCCGGCG 180 consensus_5146#1 ------------------------------------------------------------ consensus_5146#0 CCGGCGCCGCGCCACGTCGACCTCGCCGAGCTGCTCTCCCTCGCCGGGCCGTACGGCACG 240 consensus_5146#1 ------------------------------------------------------------ consensus_5146#0 TTCCTGGGCTACCTCACCAAGACGGGCGTGATCACGACGTTCCAGAGCCAGGCCAACGAC 300 consensus_5146#1 ------------------------------------------------------------ consensus_5146#0 ACCGCCGCCGGCGCCCCCGGCGTCACCGTGTTCGCCCCCGAGGACTCGGCGTTCGCGGCC 360 consensus_5146#1 ------------------------------------------------------------ consensus_5146#0 GTCGGCGGCGGCGCCGCGCTGTCCAACCTCACCGCCGACCAGCTCCGCACGCTCATGCTG 420 consensus_5146#1 ------------------------------------------------------------ consensus_5146#0 TGCCACGGGGTGCCCCGGTACCACCCGCTCTCGTCGTTCTCGGCGCTGGCCGCGTCGGGC 480 consensus_5146#1 ------------------------------------------------------------ consensus_5146#0 CCGGCGCCCACGTTCGCCGGCGGGCAGCAGTACGCCGTGAACGTCACTGACGCCGCCGGG 540 consensus_5146#1 ------------------------------------------------------------ consensus_5146#0 ACGGTCCGCATCCAGTCCGGCTGGGCCACCGCGAAGCTCGTCAGCAGCGTGTACTCGACG 600 consensus_5146#1 ------------------------------------------------------------ consensus_5146#0 TCGCCCGTGGCGGTGTACGCGCTGAACAGGGTGCTGCTGCCGGAGCAGATCTTCCCGACC 660 consensus_5146#1 ------------------------------------------------------------ consensus_5146#0 GCCCCTAAGGTCGCACCCGTGCCGGCCCCGGCCCCGGCGCCGGTGCACGGGGACAAGGCG 720 consensus_5146#1 ---------GTCGCACCCGTGCCGGCCCCGGCCCCGGCGCCGGTGCACGGGGACAAGGCG 51 *************************************************** consensus_5146#0 AACGACGGCGCACCGGGCGCAGGCGAGCTTGGCGCCTCGGACGTTAAGAGTTCGTCGTGC 780 consensus_5146#1 AACGACGGCGCACCGGGCGCAGGCGAGCTTGGCGCCTCGGACGTCAAGAGTTCGTCGTGC 111 ******************************************** *************** consensus_5146#0 CGGGTTGGCGCCGGGCGCCTTCTCGCCATCTTGGCTGTAATGGTATCCAGTTTTTCTGAT 840 consensus_5146#1 CGGGTTGGCGCCGGGCGCCTTCTCGCCATCTTGGCTGTAATGGTATCCAGTTTTTCTGAT 171 ************************************************************ consensus_5146#0 GATATAGTGGTGTGATTTTTTTTTTTTTGGCGTGGGTACATATATACAGTACTTCCCTCG 900 consensus_5146#1 GATATAGTGGTGTGATTTTTTTTTTTTTGGCGTGGGTACATATATACAGTACTTCCCTCG 231 ************************************************************ consensus_5146#0 TTTCATAATGTAATACTTTCTACCATTAACCACATTCATTTAGATGTTAATGAATCTAGA 960 consensus_5146#1 TTTCATAATGTAATACTTTCTACCATTAAC------------------------------ 261 ****************************** consensus_5146#0 CATATGCATGTATTTAGATTCATTAACATTTATATGTATGTGGGCAATGGTAAAAAGTCT 1020 consensus_5146#1 ---------------------------ATTTATATGTATGTGGGCAATGGTAAAAAGTCT 294 ********************************* consensus_5146#0 TACATTGTGAAACGGAGGGAGTAATGTTTATGTTTTTTGTCAATTCGTTTGTCGCATCTC 1080 consensus_5146#1 TACATTGTGAAACGGAGGGAGTAATGTTTATGTTTTTTGTCAATTCGTTTGTCGCATCTC 354 ************************************************************ consensus_5146#0 TGTATGTAAACATTCATTTTGCATGAACATATCTGCAAATAACATTTTCTGGCAGTTTAA 1140 consensus_5146#1 TGTATGTAAACATTCATTTTGCATGAACATATCTGCAAATAACATTTTCTGGCAGTTTAA 414 ************************************************************ consensus_5146#0 ACGAAAT---------------- 1147 consensus_5146#1 ACGAAATAAGATTCTACAAAAAA 437 ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||