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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5147#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1992 fasta sequence
[CATTTTCCTATGTTCCATCGATGTGTGTTGTCATCAATATTTTGTACCGCACGTCGTATGGGCAGTGAGTGCCGCGCCTCGTCTAGAACAAAATCGTCGGGTTTCGGCAGTGGATTGGGGAAATGGAGCGGTGGACGGGGTGCTCACGATGGCTGCGGTGGCGGGAAAAGCGACGGCGCAGTGCGGGGTGGACGGGAGCGACGATGGTGCACGGCTGAATGCGATGGGAGGCGGTGGAGAGAGGGAGCACGGTGGAGAGGTGCTTTAGGTGGTATTTTGGGGAAACGGAGGAGATGCCGAGGTAGAGCTTGGCACGGCGTTGCCGACGGCGCAAGTGGCGTGGCGCGACGGTGACTAGGGCGGCGGCGAGGTGCGGCTAGAGAGCTCCGGCGGGCGGCTGCGCATGGCTCGGCGTGGGGAGAGCGATAGGGGGCGCGGCGAGCCCGGGGATTTGGGGAAAATGGGAGAGGGGGCCCCGGGGATGCTTTTTATAGGTCCGGGAGGTGGAAATCGGGACCGAGAAAGGCGGGAACCGACCGGCGATGTGGGGCGCCGACGTGGGAAGGTTGGCGGCGGTTCGGCGCTGATTTTGCGGGGAGGAGTGGGGGAATTGGGGGAGGAGGAGGTGGGGATCGAGTCCACGTGCTCGCGAGGTGAGGTGGAGCGCGGGAAGCGCGGCATCGTGGGGCGAAACCGGCAGCCATGGCGGTTGCAGCCGGCCGGATGGAGGTAAGGGGAGAAGCTGACGAGTGGGCCCGCGGTCCCACTTGTCGGCGAGAGAAGGGGGAGGAGGCCGATGGAGGGATGCAAAGAGGACTTGCGGGAGAGGGAGGGGGAGGAGCTGGGCCGGCCCAAAAGAAGGGAGAACTTGGGCCGAAAGGAGGCCCGAAAGGAAAGAGGGGGATTTTAATTGTTTTTCTTTTTATTTAATTGGTTAAATGAACTTTGTGCTATTAAAATTATTTCTTAGAAAATTTACAGAAAAATCCGGAGAGTATATTTAGGCACAGAGAATATTTCAAAATATTTCCGGCCAATGATTTTTAAAGAAAATTTTAATTTCCTTTATAATTTCCCTTGATTAAATTACTTTAAATTTTAATATAATTCCTAGAAAATGCATTACTAATTGATTTTTAATCCCCAACGAAAATCGGGGCGTTACACTCAACCTCCTGCTGCAGGATCAGAAGGTTTTAACGAGGTACGCCGGCCATCACCCATCGGGTTGGCTGCATAGGCTGACACGCAGCCTCGGCCGCTGCCGATGGAGAGGATCTCGGTCACAGGACAGGATCGGTGATGTTGTCGAGGGCTTGCAGTTGCAATAGCCTGGCTGACTTCAATGTCAACGCCAGCACGACCTTATCGATGAGCTCTACAAACTTGGCCTATAAGCCTGATCTGCCTGGGAAGACAACGAGGTGATGGAAAACAACACCGCCTGCCAGATGCAGTATGTTAGCAGCGTGTATTTGTTTGACGAATTGAGTTTGCAGCGCATATGTGAAGGATGGTTATTGTAATGTGTGAAGGCTAGGGATCATGGTCACTTCTGTACATGCCACAACACGTTCTCTTCAAAAGGAAGAATGTCATCACAAACAACAATGTGGGCATGATCTACTGTCAATATCATTTTCATGGGAACACATTGGGCAAGGACTTGGTCTTTGCTTCTTAAGGGAACCGATGAAGAAATAGTTAAGAACTATTGCAAAGTGTTGGAGAAGCATGTGGTGGAATTCTTCTCCGTGTATGGCTGGAACCTTAGAAGAAGATTGGAAGCCTAGTCTTTTCTTCGTTTGTTGTTCTTAAAACCTTTGTTTGTGCTGTCATCTCTTATGTAATGGGAGAGGTCAGTTGATGCATTTTGTACCCTTTTATTAGGGAGAGTCTTATGTACTCGTGTTCGGATTTTGGCTGTGTATACCCCACAAAGGTGTAGAGGCCGGGTTTGATAATCCTTTATCTAAAAAATGCAAGCTCATG]
[+] EMBL AK105301 [CATTTTCCTATGTTCCATCGATGTGTGTTGTCATCAATATTTTGTACCGCACGTCGTATGGGCAGTGAGTGCCGCGCCTCGTCTAGAACAAAATCGTCGGGTTTCGGCAGTGGATTGGGGAAATGGAGCGGTGGACGGGGTGCTCACGATGGCTGCGGTGGCGGGAAAAGCGACGGCGCAGTGCGGGGTGGACGGGAGCGACGATGGTGCACGGCTGAATGCGATGGGAGGCGGTGGAGAGAGGGAGCACGGTGGAGAGGTGCTTTAGGTGGTATTTTGGGGAAACGGAGGAGATGCCGAGGTAGAGCTTGGCACGGCGTTGCCGACGGCGCAAGTGGCGTGGCGCGACGGTGACTAGGGCGGCGGCGAGGTGCGGCTAGAGAGCTCCGGCGGGCGGCTGCGCATGGCTCGGCGTGGGGAGAGCGATAGGGGGCGCGGCGAGCCCGGGGATTTGGGGAAAATGGGAGAGGGGGCCCCGGGGATGCTTTTTATAGGTCCGGGAGGTGGAAATCGGGACCGAGAAAGGCGGGAACCGACCGGCGATGTGGGGCGCCGACGTGGGAAGGTTGGCGGCGGTTCGGCGCTGATTTTGCGGGGAGGAGTGGGGGAATTGGGGGAGGAGGAGGTGGGGATCGAGTCCACGTGCTCGCGAGGTGAGGTGGAGCGCGGGAAGCGCGGCATCGTGGGGCGAAACCGGCAGCCATGGCGGTTGCAGCCGGCCGGATGGAGGTAAGGGGAGAAGCTGACGAGTGGGCCCGCGGTCCCACTTGTCGGCGAGAGAAGGGGGAGGAGGCCGATGGAGGGATGCAAAGAGGACTTGCGGGAGAGGGAGGGGGAGGAGCTGGGCCGGCCCAAAAGAAGGGAGAACTTGGGCCGAAAGGAGGCCCGAAAGGAAAGAGGGGGATTTTAATTGTTTTTCTTTTTATTTAATTGGTTAAATGAACTTTGTGCTATTAAAATTATTTCTTAGAAAATTTACAGAAAAATCCGGAGAGTATATTTAGGCACAGAGAATATTTCAAAATATTTCCGGCCAATGATTTTTAAAGAAAATTTTAATTTCCTTTATAATTTCCCTTGATTAAATTACTTTAAATTTTAATATAATTCCTAGAAAATGCATTACTAATTGATTTTTAATCCCCAACGAAAATCGGGGCGTTACACTCAACCTCCTGCTGCAGGATCAGAAGGTTTTAACGAGGTACGCCGGCCATCACCCATCGGGTTGGCTGCATAGGCTGACACGCAGCCTCGGCCGCTGCCGATGGAGAGGATCTCGGTCACAGGACAGGATCGGTGATGTTGTCGAGGGCTTGCAGTTGCAATAGCCTGGCTGACTTCAATGTCAACGCCAGCACGACCTTATCGATGAGCTCTACAAACTTGGCCTATAAGCCTGATCTGCCTGGGAAGACAACGAGGTGATGGAAAACAACACCGCCTGCCAGATGCAGTATGTTAGCAGCGTGTATTTGTTTGACGAATTGAGTTTGCAGCGCATATGTGAAGGATGGTTATTGTAATGTGTGAAGGCTAGGGATCATGGTCACTTCTGTACATGCCACAACACGTTCTCTTCAAAAGGAAGAATGTCATCACAAACAACAATGTGGGCATGATCTACTGTCAATATCATTTTCATGGGAACACATTGGGCAAGGACTTGGTCTTTGCTTCTTAAGGGAACCGATGAAGAAATAGTTAAGAACTATTGCAAAGTGTTGGAGAAGCATGTGGTGGAATTCTTCTCCGTGTATGGCTGGAACCTTAGAAGAAGATTGGAAGCCTAGTCTTTTCTTCGTTTGTTGTTCTTAAAACCTTTGTTTGTGCTGTCATCTCTTATGTAATGGGAGAGGTCAGTTGATGCATTTTGTACCCTTTTATTAGGGAGAGTCTTATGTACTCGTGTTCGGATTTTGGCTGTGTATACCCCACAAAGGTGTAGAGGCCGGGTTTGATAATCCTTTATCTAAAAAATGCAAGCTCATG]
consensusID : consensus_5147#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 803 fasta sequence
[AAGTGATCGCGTGTGTGAGGGTTTTGCCACAACAAGGATCAGAAGGTTTTAACGAGGTACGCCGGCCATCACCCATCGGGTTGGCTGCATAGGCTGACACGCAGCCTCGGCCGCTGCCGATTGGAGAGGATCTCGGTCACAGGACAGGATCGGTGATGTTGTCGAGGGCTTGCAGTTGCAATAGCCTGGCTGACTTCAATGTCAACGCCAGCACGACCTTATCGATGAGCTCTACAAACTTGGCCTATAAGCCTGATCTGCCTGGGAAGACAACGAGGTGATGGAAAACAACACCGNCTGCCAGATGCAGTATGTTAGCAGCGTGTATTTGTTTGACGAATTGAGTTTGCAGCGCATATGTGAAGGATGGTTATTGTAATGTGTGAAGGCTAGGGATCATGGTCACTTCTGTACATGCCAC-ACACG-TCAATTTCATGGGACAATATTGGGCAAGGACTTGGTCTTTGCTTCTTAAGGGAACCGATGAAGAAATAGTTAAGAACTATTGCAAAGTGTTGGAGAAGCATGTGGTGGAATTCTTCTCCGTGTATGGCTGGAACCTTAGAAGAAGATTGGAAGCCTAGTCTTTTCTTCGTTTGTTGTTCTTAAAACCTTTGTTTGTGCTGTCATCTCTTATGTAATGGGAGAGGTCAGTTGATGCATTTTGTACCCTTTTATTAGGGAGAGTCTTATGTACTCGTGTTCGGATTTTGGCTGTGTATACCCCACAAAGGTGTAGAGGCCGGGTTTGATAATCCTTTATCTAAAAAATGCAAGCTCATGTGGTTAATTCATTCTAAAAA]
[+] EMBL C73406 [AAGTGATCGCGTGTGTGAGGGTTTTGCCACAACAAGGATCAGAAGGTTTTAACGAGGTACGCCGGCCATCACCCATCGGGTTGGCTGCATAGGCTGACACGCAGCCTCGGCCGCTGCCGATTGGAGAGGATCTCGGTCACAGGACAGGATCGGTGATGTTGTCGAGGGCTTGCAGTTGCAATAGCCTGGCTGACTTCAATGTCAACGCCAGCACGACCTTATCGATGAGCTCTACAAACTTGGCCTATAAGCCTGATCTGCCTGGGAAGACAACGAGGTGATGGAAAACAACACCGNCTGCCAGATGCAGTATGTTAGCAGCGTGTATTTGTTTGACGAATTGAGTTTGCAGCGCATATGTGAAGGATGGTTATTGTAATGTGTGAAGGCTAGGGATCATGGTCACTTCTGTACATGCCAC ACACG TCAATTTCATGGGACAAT ]
[+] EMBL AU172676 [ GTGTGAAGGCTAGGGATCATGGTCACTTCTGTACATGCCACAACACGATCATTTTCATGGGAACACATTGGGCAAGGACTTGGTCTTTGCTTCTTAAGGGAACCGATGAAGAAATAGTTAAGAACTATTGCAAAGTGTTGGAGAAGCATGTGGTGGAATTCTTCTCCGTGTATGGCTGGAACCTTAGAAGAAGATTGGAAGCCTAGTCTTTTCTTCGTTTGTTGTTCTTAAAACCTTTGTTTGTGCTGTCATCTCTTATGTAATGGGAGAGGTCAGTTGATGCATTTTGTACCCTTTTATTAGGGAGAGTCTTATGTACTCGTGTTCGGATTTTGGCTGTGTATACCCCACAAAGGTGTAGAGGCCGGGTTTGATAATCCTTTATCTAAAAAATGCAAGCTCATGTGGTTAATTCATTCTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5147#0 CATTTTCCTATGTTCCATCGATGTGTGTTGTCATCAATATTTTGTACCGCACGTCGTATG 60
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 GGCAGTGAGTGCCGCGCCTCGTCTAGAACAAAATCGTCGGGTTTCGGCAGTGGATTGGGG 120
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 AAATGGAGCGGTGGACGGGGTGCTCACGATGGCTGCGGTGGCGGGAAAAGCGACGGCGCA 180
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 GTGCGGGGTGGACGGGAGCGACGATGGTGCACGGCTGAATGCGATGGGAGGCGGTGGAGA 240
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 GAGGGAGCACGGTGGAGAGGTGCTTTAGGTGGTATTTTGGGGAAACGGAGGAGATGCCGA 300
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 GGTAGAGCTTGGCACGGCGTTGCCGACGGCGCAAGTGGCGTGGCGCGACGGTGACTAGGG 360
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 CGGCGGCGAGGTGCGGCTAGAGAGCTCCGGCGGGCGGCTGCGCATGGCTCGGCGTGGGGA 420
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 GAGCGATAGGGGGCGCGGCGAGCCCGGGGATTTGGGGAAAATGGGAGAGGGGGCCCCGGG 480
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 GATGCTTTTTATAGGTCCGGGAGGTGGAAATCGGGACCGAGAAAGGCGGGAACCGACCGG 540
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 CGATGTGGGGCGCCGACGTGGGAAGGTTGGCGGCGGTTCGGCGCTGATTTTGCGGGGAGG 600
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 AGTGGGGGAATTGGGGGAGGAGGAGGTGGGGATCGAGTCCACGTGCTCGCGAGGTGAGGT 660
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 GGAGCGCGGGAAGCGCGGCATCGTGGGGCGAAACCGGCAGCCATGGCGGTTGCAGCCGGC 720
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 CGGATGGAGGTAAGGGGAGAAGCTGACGAGTGGGCCCGCGGTCCCACTTGTCGGCGAGAG 780
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 AAGGGGGAGGAGGCCGATGGAGGGATGCAAAGAGGACTTGCGGGAGAGGGAGGGGGAGGA 840
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 GCTGGGCCGGCCCAAAAGAAGGGAGAACTTGGGCCGAAAGGAGGCCCGAAAGGAAAGAGG 900
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 GGGATTTTAATTGTTTTTCTTTTTATTTAATTGGTTAAATGAACTTTGTGCTATTAAAAT 960
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 TATTTCTTAGAAAATTTACAGAAAAATCCGGAGAGTATATTTAGGCACAGAGAATATTTC 1020
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 AAAATATTTCCGGCCAATGATTTTTAAAGAAAATTTTAATTTCCTTTATAATTTCCCTTG 1080
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 ATTAAATTACTTTAAATTTTAATATAATTCCTAGAAAATGCATTACTAATTGATTTTTAA 1140
consensus_5147#1 ------------------------------------------------------------
consensus_5147#0 TCCCCAACGAAAATCGGGGCGT-TACACTCAACCTCCTGCTGCA-GGATCAGAAGGTTTT 1198
consensus_5147#1 ----------AAGTGATCGCGTGTGTGAGGGTTTTGCCACAACAAGGATCAGAAGGTTTT 50
** * **** * * * * ** ***************
consensus_5147#0 AACGAGGTACGCCGGCCATCACCCATCGGGTTGGCTGCATAGGCTGACACGCAGCCTCGG 1258
consensus_5147#1 AACGAGGTACGCCGGCCATCACCCATCGGGTTGGCTGCATAGGCTGACACGCAGCCTCGG 110
************************************************************
consensus_5147#0 CCGCTGCCGAT-GGAGAGGATCTCGGTCACAGGACAGGATCGGTGATGTTGTCGAGGGCT 1317
consensus_5147#1 CCGCTGCCGATTGGAGAGGATCTCGGTCACAGGACAGGATCGGTGATGTTGTCGAGGGCT 170
*********** ************************************************
consensus_5147#0 TGCAGTTGCAATAGCCTGGCTGACTTCAATGTCAACGCCAGCACGACCTTATCGATGAGC 1377
consensus_5147#1 TGCAGTTGCAATAGCCTGGCTGACTTCAATGTCAACGCCAGCACGACCTTATCGATGAGC 230
************************************************************
consensus_5147#0 TCTACAAACTTGGCCTATAAGCCTGATCTGCCTGGGAAGACAACGAGGTGATGGAAAACA 1437
consensus_5147#1 TCTACAAACTTGGCCTATAAGCCTGATCTGCCTGGGAAGACAACGAGGTGATGGAAAACA 290
************************************************************
consensus_5147#0 ACACCGCCTGCCAGATGCAGTATGTTAGCAGCGTGTATTTGTTTGACGAATTGAGTTTGC 1497
consensus_5147#1 ACACCGNCTGCCAGATGCAGTATGTTAGCAGCGTGTATTTGTTTGACGAATTGAGTTTGC 350
****** *****************************************************
consensus_5147#0 AGCGCATATGTGAAGGATGGTTATTGTAATGTGTGAAGGCTAGGGATCATGGTCACTTCT 1557
consensus_5147#1 AGCGCATATGTGAAGGATGGTTATTGTAATGTGTGAAGGCTAGGGATCATGGTCACTTCT 410
************************************************************
consensus_5147#0 GTACATGCCACAACACGTTCTCTTCAAAAGGAAGAATGTCATCACAAACAACAATGTGGG 1617
consensus_5147#1 GTACATGCCACA-CACGT------------------------------------------ 427
************ *****
consensus_5147#0 CATGATCTACTGTCAATATCATTTTCATGGGAACACATTGGGCAAGGACTTGGTCTTTGC 1677
consensus_5147#1 -------------------CAATTTCATGGGACAATATTGGGCAAGGACTTGGTCTTTGC 468
** ********** * ************************
consensus_5147#0 TTCTTAAGGGAACCGATGAAGAAATAGTTAAGAACTATTGCAAAGTGTTGGAGAAGCATG 1737
consensus_5147#1 TTCTTAAGGGAACCGATGAAGAAATAGTTAAGAACTATTGCAAAGTGTTGGAGAAGCATG 528
************************************************************
consensus_5147#0 TGGTGGAATTCTTCTCCGTGTATGGCTGGAACCTTAGAAGAAGATTGGAAGCCTAGTCTT 1797
consensus_5147#1 TGGTGGAATTCTTCTCCGTGTATGGCTGGAACCTTAGAAGAAGATTGGAAGCCTAGTCTT 588
************************************************************
consensus_5147#0 TTCTTCGTTTGTTGTTCTTAAAACCTTTGTTTGTGCTGTCATCTCTTATGTAATGGGAGA 1857
consensus_5147#1 TTCTTCGTTTGTTGTTCTTAAAACCTTTGTTTGTGCTGTCATCTCTTATGTAATGGGAGA 648
************************************************************
consensus_5147#0 GGTCAGTTGATGCATTTTGTACCCTTTTATTAGGGAGAGTCTTATGTACTCGTGTTCGGA 1917
consensus_5147#1 GGTCAGTTGATGCATTTTGTACCCTTTTATTAGGGAGAGTCTTATGTACTCGTGTTCGGA 708
************************************************************
consensus_5147#0 TTTTGGCTGTGTATACCCCACAAAGGTGTAGAGGCCGGGTTTGATAATCCTTTATCTAAA 1977
consensus_5147#1 TTTTGGCTGTGTATACCCCACAAAGGTGTAGAGGCCGGGTTTGATAATCCTTTATCTAAA 768
************************************************************
consensus_5147#0 AAATGCAAGCTCATG-------------------- 1992
consensus_5147#1 AAATGCAAGCTCATGTGGTTAATTCATTCTAAAAA 803
***************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||