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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5150#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1261 fasta sequence
[CTCCTCCGCCGCCGCGAACCCGATCTCGATCCCCTCCCATGGCGGCCGCCCTCTCCTCCTCCCGGAGGGCCCTCCACGCCCTCCACCGCCGCCTCCTCCTCCACCCCCTCCCCTCCCGCCACGCTCCCCCCATCCCCCGCCACCACTTCCCCTCTCCTCCCTCCTCCTCCTCCTCCTCCTCCCGCTTCTTCACCACCACGCGCCCCGACGCGAGGCTACTACAGCTGCATGCGCGGCGGCTCGTGGTGGGCGGGGCAAGGTCGTTCGCGGCGGGCGTCGGCGGCGGGGGGTCGTCGAAGCTGGCGCCGCTGGGGCAGGGGGTGAAGGGGCTGGGGCTGGGGCGGCCGCTGGACGCGGCCAAGAACGCGGCGGCGAGGTACCGGGAGGCCGTGGGGCTGCAGGTGGAGGCGTTCTGGAGGCGCAACTACATGCTGCTCGTCGGCGCCGGGGCGGTCGTCGTCTGCATCGCGCTGTGGAGGGTCATGTTCGGCATCGCCAGCACCTTCGTCGGGCTCTCCGAGGGCATGGCCAAGTACGGCTTCCTCGCCCTCGCCACCGCCATGGTGGCGTTCGCCGGCATGTACACACGCTCAAGATTCACCATAAATCCTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAATCCTTGAAGTCATGGGTGCACCCTTAGCCGGTACTGATGTCAGAGCATATGTCATGTCTGGAGGGGGGCCTAAACTCAAGGACTTCAAATTTAGGCTTGGTGGCAAAAGGTGCTTTCTGATCTTCCCCATTAAAGGATCAGAAAGAAAAGGCCTTGTAAGTGTTGAGGTCAAGAAGAAAAAGGGACAGTACGACATGAAGCTACTCGCTGTTGACATACCAATGGCGTCAGGACCTGATCAGCGGTTATTCCTTGTCGGTGACGAGCAGGAGTACAAGGTGGGTGGGGGTTTGATATCTGAGCTGCGGGACCCTATAGTAAAAGCTATGGCTGCAGAGAAGGAGTTTGATTATCTTGATGAAAGAGAGGATGCGGAGGATGAAGCGAGGGAGCGTGAGGAGGCTGAGCGAAGACAACAGGAAGAGGAAGCTGAAGCATTGAGGCGTGAGGAGGAAAGATTACGTGAGGAGTACGAAGAAAGGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCGCATCGATTTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTTT]
[+] EMBL AK063678 [CTCCTCCGCCGCCGCGAACCCGATCTCGATCCCCTCCCATGGCGGCCGCCCTCTCCTCCTCCCGGAGGGCCCTCCACGCCCTCCACCGCCGCCTCCTCCTCCACCCCCTCCCCTCCCGCCACGCTCCCCCCATCCCCCGCCACCACTTCCCCTCTCCTCCCTCCTCCTCCTCCTCCTCCTCCCGCTTCTTCACCACCACGCGCCCCGACGCGAGGCTACTACAGCTGCATGCGCGGCGGCTCGTGGTGGGCGGGGCAAGGTCGTTCGCGGCGGGCGTCGGCGGCGGGGGGTCGTCGAAGCTGGCGCCGCTGGGGCAGGGGGTGAAGGGGCTGGGGCTGGGGCGGCCGCTGGACGCGGCCAAGAACGCGGCGGCGAGGTACCGGGAGGCCGTGGGGCTGCAGGTGGAGGCGTTCTGGAGGCGCAACTACATGCTGCTCGTCGGCGCCGGGGCGGTCGTCGTCTGCATCGCGCTGTGGAGGGTCATGTTCGGCATCGCCAGCACCTTCGTCGGGCTCTCCGAGGGCATGGCCAAGTACGGCTTCCTCGCCCTCGCCACCGCCATGGTGGCGTTCGCCGGCATGTACACACGCTCAAGATTCACCATAAATCCTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAATCCTTGAAGTCATGGGTGCACCCTTAGCCGGTACTGATGTCAGAGCATATGTCATGTCTGGAGGGGGGCCTAAACTCAAGGACTTCAAATTTAGGCTTGGTGGCAAAAGGTGCTTTCTGATCTTCCCCATTAAAGGATCAGAAAGAAAAGGCCTTGTAAGTGTTGAGGTCAAGAAGAAAAAGGGACAGTACGACATGAAGCTACTCGCTGTTGACATACCAATGGCGTCAGGACCTGATCAGCGGTTATTCCTTGTCGGTGACGAGCAGGAGTACAAGGTGGGTGGGGGTTTGATATCTGAGCTGCGGGACCCTATAGTAAAAGCTATGGCTGCAGAGAAGGAGTTTGATTATCTTGATGAAAGAGAGGATGCGGAGGATGAAGCGAGGGAGCGTGAGGAGGCTGAGCGAAGACAACAGGAAGAGGAAGCTGAAGCATTGAGGCGTGAGGAGGAAAGATTACGTGAGGAGTACGAAGAAAGGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCGCATCGATTTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTTT]
consensusID : consensus_5150#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 856 fasta sequence
[CAGGTGCAGGCGTTCTGGAGGCGCAACTACATGCTGCTCGTCGGCGCCGGGGCGGTCGTCGTCTGCATCGCGCTGTGGAGGGTCATGTTCGGCATCGCCACCGCCATGGTGGCGTTCGCCGGCATGTACACACGCTCAAGATTCACCATAAATCCTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAATCCTTGAAGTCATGGGTGCACCCTTAGCCGGTACTGATCTTCCCCATTAAAGGATCAGAAAGAAAAGGCCTTGTAAGTGTTGAGGTCAAGAAGAAAAAGGGACAGTACGACATGAAGCTACTCGCTGTTGACATACCAATGGCGTCAGGACCTGATCAGCGGTTATTCCTTGTCGGTGACGAGCAGGAGTACAAGGTGGGTGGGGGTTTGATATCTGAGCTGCGGGACCCTATAGTAAAAGCTATGGCTGCAGAGAAGGAGTTTGATTATCTTGATGAAAGAGAGGATGCGGAGGATGAAGCGAGGGAGCGTGAGGAGGCTGAGCGAAGACAACAGGAAGAGGAAGCTGAAGCATTGAGGCGTGAGGAGGAAAGATTACGTGAGGAGTACGAAGAAAGGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCGCATCGATTTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTTTCAACAGCGACAAATGATTGCATCTGAGTTTCAGAGAGGCAATTTGACTTCACCATGCACAGCGTGTGAAGAAAGTAATAATTCTTTTTGCTGCTCCACAACGGATTTACTCTGGAGCTCGCTTAATAAAGGGA]
[+] EMBL CB648651 [CAGGTGCAGGCGTTCTGGAGGCGCAACTACATGCTGCTCGTCGGCGCCGGGGCGGTCGTCGTCTGCATCGCGCTGTGGAGGGTCATGTTCGGCATCGCCACCGCCATGGTGGCGTTCGCCGGCATGTACACACGCTCAAGATTCACCATAAATCCTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAATCCTTGAAGTCATGGGTGCACCCTTAGCCGGTACTGATCTTCCCCATTAAAGGATCAGAAAGAAAAGGCCTTGTAAGTGTTGAGGTCAAGAAGAAAAAGGGACAGTACGACATGAAGCTACTCGCTGTTGACATACCAATGGCGTCAGGACCTGATCAGCGGTTATTCCTTGTCGGTGACGAGCAGGAGTACAAGGTGGGTGGGGGTTTGATATCTGAGCTGCGGGACCCTATAGTAAAAGCTATGGCTGCAGAGAAGGAGTTTGATTATCTTGATGAAAGAGAGGATGCGGAGGATGAAGCGAGGGAGCGTGAGGAGGCTGAGCGAAGACAACAGGAAGAGGAAGCTGAAGCATTGAGGCGTGAGGAGGAAAGATTACGTGAGGAGTACGAAGAAAGGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCGCATCGATTTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTTTCAACAGCGACAAATGATTGCATCTGAGTTTCAGAGAGGCAATTTGACTTCACCATGCACAGCGTGTGAAGAAAGTAATAATTCTTTTTGCTGCTCCACAACG ]
[-] EMBL CB648652 [ GCGGTCGTCGTCTGCATCGCGCTGTGGAGGGTCATGTTCGGCATCGCCACCGCCATGGTGGCGTTCGCCGGCATGTACACACGCTCAAGATTCACCATAAATCGTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAATCCTTGAAGTCATGGGTGCACCCTTAGCCGGTACTGATCTTCCCCATTAAAGGATCAGAAAGAAAAGGCCTTGTAAGTGTTGAGGTCAAGAAGAAAAAGGGACAGTCCGACATGAAGCTACTCGCTGTTGACATACCAATGGCGTCAGGACCTGATCAGCGGTTATTCCTTGTCGGTGACGAGCAGGAGTACAAGGTGGGTGGGGGTTTGATATCTGAGCTGCGGGACCCTATAGTAAAAGCTATGGCTGCAGAGAAGGAGTTTGATTATCTTGATGAAAGAGAGGATGCGGAGGATGAAGCGAGGGAGCGTGAGGAGGCTGAGCGAAGACACCAGGAAGAGGAAGCTGAAGCATTGAGGCGTGAGGAGGAAAGATTACGTGAGGAGTACGAAGAAAGGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCGCATCGATTTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTTTCAACAGCGACAAATGATTGCATCTGAGTTTCAGAGAGGCAATTTGACTTCACCATGCACAGCGTGTGAAGAAAGTAATAATTCTTTTTGAGGCTCCACAACGGATTTACTCTGGAGCTCGCTTAATAAAGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5150#0 CTCCTCCGCCGCCGCGAACCCGATCTCGATCCCCTCCCATGGCGGCCGCCCTCTCCTCCT 60
consensus_5150#1 ------------------------------------------------------------
consensus_5150#0 CCCGGAGGGCCCTCCACGCCCTCCACCGCCGCCTCCTCCTCCACCCCCTCCCCTCCCGCC 120
consensus_5150#1 ------------------------------------------------------------
consensus_5150#0 ACGCTCCCCCCATCCCCCGCCACCACTTCCCCTCTCCTCCCTCCTCCTCCTCCTCCTCCT 180
consensus_5150#1 ------------------------------------------------------------
consensus_5150#0 CCCGCTTCTTCACCACCACGCGCCCCGACGCGAGGCTACTACAGCTGCATGCGCGGCGGC 240
consensus_5150#1 ------------------------------------------------------------
consensus_5150#0 TCGTGGTGGGCGGGGCAAGGTCGTTCGCGGCGGGCGTCGGCGGCGGGGGGTCGTCGAAGC 300
consensus_5150#1 ------------------------------------------------------------
consensus_5150#0 TGGCGCCGCTGGGGCAGGGGGTGAAGGGGCTGGGGCTGGGGCGGCCGCTGGACGCGGCCA 360
consensus_5150#1 ------------------------------------------------------------
consensus_5150#0 AGAACGCGGCGGCGAGGTACCGGGAGGCCGTGGGGCTGCAGGTGGAGGCGTTCTGGAGGC 420
consensus_5150#1 --------------------------------------CAGGTGCAGGCGTTCTGGAGGC 22
****** ***************
consensus_5150#0 GCAACTACATGCTGCTCGTCGGCGCCGGGGCGGTCGTCGTCTGCATCGCGCTGTGGAGGG 480
consensus_5150#1 GCAACTACATGCTGCTCGTCGGCGCCGGGGCGGTCGTCGTCTGCATCGCGCTGTGGAGGG 82
************************************************************
consensus_5150#0 TCATGTTCGGCATCGCCAGCACCTTCGTCGGGCTCTCCGAGGGCATGGCCAAGTACGGCT 540
consensus_5150#1 TCATGTTCGGCATC---------------------------------------------- 96
**************
consensus_5150#0 TCCTCGCCCTCGCCACCGCCATGGTGGCGTTCGCCGGCATGTACACACGCTCAAGATTCA 600
consensus_5150#1 -----------GCCACCGCCATGGTGGCGTTCGCCGGCATGTACACACGCTCAAGATTCA 145
*************************************************
consensus_5150#0 CCATAAATCCTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAA 660
consensus_5150#1 CCATAAATCCTGATAAGGTTTATAGAATAGCAATGACAAAGCTCAACACATCTGCTGCAA 205
************************************************************
consensus_5150#0 TCCTTGAAGTCATGGGTGCACCCTTAGCCGGTACTGATGTCAGAGCATATGTCATGTCTG 720
consensus_5150#1 TCCTTGAAGTCATGGGTGCACCCTTAGCCGGTACTGAT---------------------- 243
**************************************
consensus_5150#0 GAGGGGGGCCTAAACTCAAGGACTTCAAATTTAGGCTTGGTGGCAAAAGGTGCTTTCTGA 780
consensus_5150#1 ------------------------------------------------------------
consensus_5150#0 TCTTCCCCATTAAAGGATCAGAAAGAAAAGGCCTTGTAAGTGTTGAGGTCAAGAAGAAAA 840
consensus_5150#1 -CTTCCCCATTAAAGGATCAGAAAGAAAAGGCCTTGTAAGTGTTGAGGTCAAGAAGAAAA 302
***********************************************************
consensus_5150#0 AGGGACAGTACGACATGAAGCTACTCGCTGTTGACATACCAATGGCGTCAGGACCTGATC 900
consensus_5150#1 AGGGACAGTACGACATGAAGCTACTCGCTGTTGACATACCAATGGCGTCAGGACCTGATC 362
************************************************************
consensus_5150#0 AGCGGTTATTCCTTGTCGGTGACGAGCAGGAGTACAAGGTGGGTGGGGGTTTGATATCTG 960
consensus_5150#1 AGCGGTTATTCCTTGTCGGTGACGAGCAGGAGTACAAGGTGGGTGGGGGTTTGATATCTG 422
************************************************************
consensus_5150#0 AGCTGCGGGACCCTATAGTAAAAGCTATGGCTGCAGAGAAGGAGTTTGATTATCTTGATG 1020
consensus_5150#1 AGCTGCGGGACCCTATAGTAAAAGCTATGGCTGCAGAGAAGGAGTTTGATTATCTTGATG 482
************************************************************
consensus_5150#0 AAAGAGAGGATGCGGAGGATGAAGCGAGGGAGCGTGAGGAGGCTGAGCGAAGACAACAGG 1080
consensus_5150#1 AAAGAGAGGATGCGGAGGATGAAGCGAGGGAGCGTGAGGAGGCTGAGCGAAGACAACAGG 542
************************************************************
consensus_5150#0 AAGAGGAAGCTGAAGCATTGAGGCGTGAGGAGGAAAGATTACGTGAGGAGTACGAAGAAA 1140
consensus_5150#1 AAGAGGAAGCTGAAGCATTGAGGCGTGAGGAGGAAAGATTACGTGAGGAGTACGAAGAAA 602
************************************************************
consensus_5150#0 GGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCGCATCGAT 1200
consensus_5150#1 GGAAGCGGCAAGAAGCTGAGAACCTGGAGAAAACCACTTGACACAATTAACCGCATCGAT 662
************************************************************
consensus_5150#0 TTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTT 1260
consensus_5150#1 TTTTTCGTGTTGTGCATTTTGTTCTTCCCCAACACTCCACACTAAGTAGCAACCAACGTT 722
************************************************************
consensus_5150#0 T----------------------------------------------------------- 1261
consensus_5150#1 TCAACAGCGACAAATGATTGCATCTGAGTTTCAGAGAGGCAATTTGACTTCACCATGCAC 782
*
consensus_5150#0 ------------------------------------------------------------
consensus_5150#1 AGCGTGTGAAGAAAGTAATAATTCTTTTTGCTGCTCCACAACGGATTTACTCTGGAGCTC 842
consensus_5150#0 --------------
consensus_5150#1 GCTTAATAAAGGGA 856
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||