These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1113 fasta sequence [CATCACCTGCAACCTCACACTTGTGCTTTTGCTAGCTTGTCCCTCCTCAGAAATGGCCATCCTGGCGTCCATGGCGGCAATGGCGTTCTTGCTGCTGATGGAGGCAATGAGCGTGTCACACGGCCAGCTTCAGGTCGGGTTCTACTCCGACTCCTGCCCCGACGCTGAGGACATCGTCACCGCCGCCGTCCAGGACGCCGCCGGCTCCGACCCCACCATCCTCCCCGCCCTCCTCCGCCTCCAGTTCCACGACTGC-TTCGTCCGGGGGTGCGACGCGTCGGTGCTGATCCGGAGCGCGCGGAACGACGCGGAGGTGAACAACAACAAGCACCAGGGGCTGCGCGGGCAGGCCGTCGTGGACGCGGCCAAGGCGGAGCTCGAGGACCAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCATCGCGCTCGCCGCGCGCGACGCCATCGCCATGACGGGCGGGCCGTCGTTCGACGTGCCGACGGGGCGGCGCGACGGGCTGGTCTCCAACCTCCGCGACGCCGACGTGCTTCCGGACGTCGTCGATTCCATCCAGGTGCTCCGCTCCAGGTTCGCCGCCAGCGGCCTCGACGACCGCGACCTCGTCCTCCTCACAGCGGCGCACACGATCGGCACGACGGCGTGCTTCTTCGTGAAGGACAGGCTGTACAACTACCGCCTCCGCGGCGGCGGCGTCGGGTCGGACCCGTCCATCCCGGCGGCGTTCCTGGCGGAGCTCAAGGCGCGGTGCGCGCCGGGCGACTTCAACACGCGCGTCGCGCTGGACCGCGGCAGCGAGCGCGACTTCGACGACTCCATCCTCCGCAACATCCGCTCCGGCCTCGCCGTCATCGCCTCTGACGCCGCGCTCGACGCCAGCAACGCCACGCGCGGCCTCGTCACGGCCTACCTCGGCGCCGCGTCGCGCAGGTTCGAGCGGGACTTCGTCGCCGCCATGGTGAAGATGGGCACCATCGGCGCGCTCACCGGCGACGACGGCGAGGTCAGGGACGTGTGCTCCCAGTTCAACACCGACTGATTGATCGATCGATCGATCCATCGGTCGAACACTGTACATTTCTTCTGAAAGATCAAATCGATTCAAGAATTCAACAA] [+] EMBL AK061040 [CATCACCTGCAACCTCACACTTGTGCTTTTGCTAGCTTGTCCCTCCTCAGAAATGGCCATCCTGGCGTCCATGGCGGCAATGGCGTTCTTGCTGCTGATGGAGGCAATGAGCGTGTCACACGGCCAGCTTCAGGTCGGGTTCTACTCCGACTCCTGCCCCGACGCTGAGGACATCGTCACCGCCGCCGTCCAGGACGCCGCCGGCTCCGACCCCACCATCCTCCCCGCCCTCCTCCGCCTCCAGTTCCACGACTGC TTCGTCCGGGGGTGCGACGCGTCGGTGCTGATCCGGAGCGCGCGGAACGACGCGGAGGTGAACAACAACAAGCACCAGGGGCTGCGCGGGCAGGCCGTCGTGGACGCGGCCAAGGCGGAGCTCGAGGACCAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCATCGCGCTCGCCGCGCGCGACGCCATCGCCATGACGGGCGGGCCGTCGTTCGACGTGCCGACGGGGCGGCGCGACGGGCTGGTCTCCAACCTCCGCGACGCCGACGTGCTTCCGGACGTCGTCGATTCCATCCAGGTGCTCCGCTCCAGGTTCGCCGCCAGCGGCCTCGACGACCGCGACCTCGTCCTCCTCACAGCGGCGCACACGATCGGCACGACGGCGTGCTTCTTCGTGAAGGACAGGCTGTACAACTACCGCCTCCGCGGCGGCGGCGTCGGGTCGGACCCGTCCATCCCGGCGGCGTTCCTGGCGGAGCTCAAGGCGCGGTGCGCGCCGGGCGACTTCAACACGCGCGTCGCGCTGGACCGCGGCAGCGAGCGCGACTTCGACGACTCCATCCTCCGCAACATCCGCTCCGGCCTCGCCGTCATCGCCTCTGACGCCGCGCTCGACGCCAGCAACGCCACGCGCGGCCTCGTCACGGCCTACCTCGGCGCCGCGTCGCGCAGGTTCGAGCGGGACTTCGTCGCCGCCATGGTGAAGATGGGCACCATCGGCGCGCTCACCGGCGACGACGGCGAGGTCAGGGACGTGTGCTCCCAGTTCAACACCGACTGATTGATCGATCGATCGATCCATCGGTCGAACACTGTACATTTCTTCTGAAAGATCAAATCGATTCAAGAATTCAACAA] [+] EMBL OSS2711A [ CACACTTGTGCTTTTGCTAGCTTGTCCCTCCTCAGAAATGGCCATCCTGGCGTCCATGGCGGCAATGGCGTTCTTGCTGCTGATGGAGGCAATGAGCGTGTCACACGGCCAGCTTCAGGTCGGGTTCTACTCCGACTCCTGCCCCGACGCTGAGGACATCGTCACCGCCGCCGTCCAGGACGCCGCCGGCTCCGACCCCACCATCCTCCCCGCCCTCCTCCGCCTCCAGTTCCACGACTGCTTTCGTCCGGGGGTGCNACGCGTCGGTGCTGATCCGGAGCGCGCGGAACGACGCGGAGGTGAACAACAACAAGCACCAGGGGCTG ] consensusID : consensus_5155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [GCCGGTGCNCGCCGGGCGACTTCAAACNACCCCGTCGCGCTGGACCGCGGCAGCGAGCGCGACTTCGACGGCGAGGTCAGGGACGTGTGCTCCCAGTTCAACACCGACTGATTGATCGATCGATCGATCCATCGGTCGAACACTGTACATTTCTTCTGAAAGATCAAATCGATTCAAGAATTCAACAACAAATGAAATGATATACTCCATGAAAGAAAAGATTAGGATCTCTCTCTTTCTGTGTGTGTGTTCGTGTGTGTACTCCAAATGTGATACAAATTTCACATTGAAATTCGGCAGAATTTGAGGAATTAAGCTTGAAAGTTTGCTGGAGAAAAAAAA] [+] EMBL AU033088 [GCCGGTGCNCGCCGGGCGACTTCAAACNACCCCGTCGCGCTGGACCGCGGCAGCGAGCGCGACTTCGACGGCGAGGTCAGGGACGTGTGCTCCCAGTTCAACACCGACTGATTGATCGATCGATCGATCCATCGGTCGAACACTGTACATTTCTTCTGAAAGATCAAATCGATTCAAGAATTCAACAACAAATGAAATGATATACTCCATGAAAGAAAAGATTAGGATCTCTCTCTTTCTGTGTGTGTGTTCGTGTGTGTACTCCAAATGTGATACAAATTTCACATTGAAATTCGGCAGAATTTGAGGAATTAAGCTTGAAAGTTTGCTGGAGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5155#0 CATCACCTGCAACCTCACACTTGTGCTTTTGCTAGCTTGTCCCTCCTCAGAAATGGCCAT 60 consensus_5155#1 ------------------------------------------------------------ consensus_5155#0 CCTGGCGTCCATGGCGGCAATGGCGTTCTTGCTGCTGATGGAGGCAATGAGCGTGTCACA 120 consensus_5155#1 ------------------------------------------------------------ consensus_5155#0 CGGCCAGCTTCAGGTCGGGTTCTACTCCGACTCCTGCCCCGACGCTGAGGACATCGTCAC 180 consensus_5155#1 ------------------------------------------------------------ consensus_5155#0 CGCCGCCGTCCAGGACGCCGCCGGCTCCGACCCCACCATCCTCCCCGCCCTCCTCCGCCT 240 consensus_5155#1 ------------------------------------------------------------ consensus_5155#0 CCAGTTCCACGACTGCTTCGTCCGGGGGTGCGACGCGTCGGTGCTGATCCGGAGCGCGCG 300 consensus_5155#1 ------------------------------------------------------------ consensus_5155#0 GAACGACGCGGAGGTGAACAACAACAAGCACCAGGGGCTGCGCGGGCAGGCCGTCGTGGA 360 consensus_5155#1 ------------------------------------------------------------ consensus_5155#0 CGCGGCCAAGGCGGAGCTCGAGGACCAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCAT 420 consensus_5155#1 ------------------------------------------------------------ consensus_5155#0 CGCGCTCGCCGCGCGCGACGCCATCGCCATGACGGGCGGGCCGTCGTTCGACGTGCCGAC 480 consensus_5155#1 ------------------------------------------------------------ consensus_5155#0 GGGGCGGCGCGACGGGCTGGTCTCCAACCTCCGCGACGCCGACGTGCTTCCGGACGTCGT 540 consensus_5155#1 ------------------------------------------------------------ consensus_5155#0 CGATTCCATCCAGGTGCTCCGCTCCAGGTTCGCCGCCAGCGGCCTCGACGACCGCGACCT 600 consensus_5155#1 ------------------------------------------------------------ consensus_5155#0 CGTCCTCCTCACAGCGGCGCACACGATCGGCACGACGGCGTGCTTCTTCGTGAAGGACAG 660 consensus_5155#1 ------------------------------------------------------------ consensus_5155#0 GCTGTACAACTACCGCCTCCGCGGCGGCGGCGTCGGGTCGGACCCGTCCATCCCGGCGGC 720 consensus_5155#1 ------------------------------------------------------------ consensus_5155#0 GTTCCTGGCGGAGCTCAAGGCGCGGTGCGCGCCGGGCGACTTCAA-CACGCGCGTCGCGC 779 consensus_5155#1 -------------------GC-CGGTGCNCGCCGGGCGACTTCAAACNACCCCGTCGCGC 40 ** ****** **************** * * ******** consensus_5155#0 TGGACCGCGGCAGCGAGCGCGACTTCGACGACTCCATCCTCCGCAACATCCGCTCCGGCC 839 consensus_5155#1 TGGACCGCGGCAGCGAGCGCGACTTCGACGGCGAGGTC---AGGGACGTGTGCTCCCAGT 97 ****************************** * ** * ** * ***** consensus_5155#0 TCGCCGTCATCGCCTCTGACGCCGCGCTCGA--CGCCAGC--AACGCCACGCGCGGCCTC 895 consensus_5155#1 TCAACACCGAC-TGATTGATCGATCGATCGATCCATCGGTCGAACACTGTACATTTCTTC 156 ** * * * *** ** **** * * * *** * * * ** consensus_5155#0 GTCACGGCCTACCTCGGCGCCGCGTCGCGCAGGTTCGAGCGGGACTTCGTCGCCGCCATG 955 consensus_5155#1 -TGAAAGATCAAATCGATTCAAGA--ATTCAACAACAAATGAAATGATATA--CTCCATG 211 * * * * *** * ** * * * * * * ***** consensus_5155#0 GTGAAGATGGGCACCATCGGCGCGCTCACCGGCGACGACGGCGAGGTCAGGGACGTGTGC 1015 consensus_5155#1 AAAGAAAAGATTAGGATCT-----CTCTCTTTCTGTG--TGTGTGTTC--GTGTGTGTAC 262 * * * * *** *** * * * * * * ** * **** * consensus_5155#0 TCCCAGTTCAACACCGACTGATTGATCGA--TCGATCGATCCATCGGTCGAACACTGTAC 1073 consensus_5155#1 TCCAAATGTGATACAAATTTCACATTGAAATTCGGCAGAATTTGAGGAATTAAGCTTGAA 322 *** * * * ** * * * * *** ** ** * ** * consensus_5155#0 ATTTCTTCTGAAAGATCAAATCGATTCAAGAATTCAACAA 1113 consensus_5155#1 AGTTTGCTGGAGAAAAAAAA-------------------- 342 * ** ** * * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||