cluster # 5155

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Oryza sativa
cluster # 5155 cluster # 5155 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5155#0 length = 1113 sequences # 2

consensus_5155#1 length = 342 sequences # 1

consensusID : consensus_5155#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1113
fasta sequence

                              [CATCACCTGCAACCTCACACTTGTGCTTTTGCTAGCTTGTCCCTCCTCAGAAATGGCCATCCTGGCGTCCATGGCGGCAATGGCGTTCTTGCTGCTGATGGAGGCAATGAGCGTGTCACACGGCCAGCTTCAGGTCGGGTTCTACTCCGACTCCTGCCCCGACGCTGAGGACATCGTCACCGCCGCCGTCCAGGACGCCGCCGGCTCCGACCCCACCATCCTCCCCGCCCTCCTCCGCCTCCAGTTCCACGACTGC-TTCGTCCGGGGGTGCGACGCGTCGGTGCTGATCCGGAGCGCGCGGAACGACGCGGAGGTGAACAACAACAAGCACCAGGGGCTGCGCGGGCAGGCCGTCGTGGACGCGGCCAAGGCGGAGCTCGAGGACCAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCATCGCGCTCGCCGCGCGCGACGCCATCGCCATGACGGGCGGGCCGTCGTTCGACGTGCCGACGGGGCGGCGCGACGGGCTGGTCTCCAACCTCCGCGACGCCGACGTGCTTCCGGACGTCGTCGATTCCATCCAGGTGCTCCGCTCCAGGTTCGCCGCCAGCGGCCTCGACGACCGCGACCTCGTCCTCCTCACAGCGGCGCACACGATCGGCACGACGGCGTGCTTCTTCGTGAAGGACAGGCTGTACAACTACCGCCTCCGCGGCGGCGGCGTCGGGTCGGACCCGTCCATCCCGGCGGCGTTCCTGGCGGAGCTCAAGGCGCGGTGCGCGCCGGGCGACTTCAACACGCGCGTCGCGCTGGACCGCGGCAGCGAGCGCGACTTCGACGACTCCATCCTCCGCAACATCCGCTCCGGCCTCGCCGTCATCGCCTCTGACGCCGCGCTCGACGCCAGCAACGCCACGCGCGGCCTCGTCACGGCCTACCTCGGCGCCGCGTCGCGCAGGTTCGAGCGGGACTTCGTCGCCGCCATGGTGAAGATGGGCACCATCGGCGCGCTCACCGGCGACGACGGCGAGGTCAGGGACGTGTGCTCCCAGTTCAACACCGACTGATTGATCGATCGATCGATCCATCGGTCGAACACTGTACATTTCTTCTGAAAGATCAAATCGATTCAAGAATTCAACAA]

[+] EMBL AK061040             [CATCACCTGCAACCTCACACTTGTGCTTTTGCTAGCTTGTCCCTCCTCAGAAATGGCCATCCTGGCGTCCATGGCGGCAATGGCGTTCTTGCTGCTGATGGAGGCAATGAGCGTGTCACACGGCCAGCTTCAGGTCGGGTTCTACTCCGACTCCTGCCCCGACGCTGAGGACATCGTCACCGCCGCCGTCCAGGACGCCGCCGGCTCCGACCCCACCATCCTCCCCGCCCTCCTCCGCCTCCAGTTCCACGACTGC TTCGTCCGGGGGTGCGACGCGTCGGTGCTGATCCGGAGCGCGCGGAACGACGCGGAGGTGAACAACAACAAGCACCAGGGGCTGCGCGGGCAGGCCGTCGTGGACGCGGCCAAGGCGGAGCTCGAGGACCAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCATCGCGCTCGCCGCGCGCGACGCCATCGCCATGACGGGCGGGCCGTCGTTCGACGTGCCGACGGGGCGGCGCGACGGGCTGGTCTCCAACCTCCGCGACGCCGACGTGCTTCCGGACGTCGTCGATTCCATCCAGGTGCTCCGCTCCAGGTTCGCCGCCAGCGGCCTCGACGACCGCGACCTCGTCCTCCTCACAGCGGCGCACACGATCGGCACGACGGCGTGCTTCTTCGTGAAGGACAGGCTGTACAACTACCGCCTCCGCGGCGGCGGCGTCGGGTCGGACCCGTCCATCCCGGCGGCGTTCCTGGCGGAGCTCAAGGCGCGGTGCGCGCCGGGCGACTTCAACACGCGCGTCGCGCTGGACCGCGGCAGCGAGCGCGACTTCGACGACTCCATCCTCCGCAACATCCGCTCCGGCCTCGCCGTCATCGCCTCTGACGCCGCGCTCGACGCCAGCAACGCCACGCGCGGCCTCGTCACGGCCTACCTCGGCGCCGCGTCGCGCAGGTTCGAGCGGGACTTCGTCGCCGCCATGGTGAAGATGGGCACCATCGGCGCGCTCACCGGCGACGACGGCGAGGTCAGGGACGTGTGCTCCCAGTTCAACACCGACTGATTGATCGATCGATCGATCCATCGGTCGAACACTGTACATTTCTTCTGAAAGATCAAATCGATTCAAGAATTCAACAA]
[+] EMBL OSS2711A             [               CACACTTGTGCTTTTGCTAGCTTGTCCCTCCTCAGAAATGGCCATCCTGGCGTCCATGGCGGCAATGGCGTTCTTGCTGCTGATGGAGGCAATGAGCGTGTCACACGGCCAGCTTCAGGTCGGGTTCTACTCCGACTCCTGCCCCGACGCTGAGGACATCGTCACCGCCGCCGTCCAGGACGCCGCCGGCTCCGACCCCACCATCCTCCCCGCCCTCCTCCGCCTCCAGTTCCACGACTGCTTTCGTCCGGGGGTGCNACGCGTCGGTGCTGATCCGGAGCGCGCGGAACGACGCGGAGGTGAACAACAACAAGCACCAGGGGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]




>consensus_5155#0
CATCACCTGCAACCTCACACTTGTGCTTTTGCTAGCTTGTCCCTCCTCAGAAATGGCCAT
CCTGGCGTCCATGGCGGCAATGGCGTTCTTGCTGCTGATGGAGGCAATGAGCGTGTCACA
CGGCCAGCTTCAGGTCGGGTTCTACTCCGACTCCTGCCCCGACGCTGAGGACATCGTCAC
CGCCGCCGTCCAGGACGCCGCCGGCTCCGACCCCACCATCCTCCCCGCCCTCCTCCGCCT
CCAGTTCCACGACTGCTTCGTCCGGGGGTGCGACGCGTCGGTGCTGATCCGGAGCGCGCG
GAACGACGCGGAGGTGAACAACAACAAGCACCAGGGGCTGCGCGGGCAGGCCGTCGTGGA
CGCGGCCAAGGCGGAGCTCGAGGACCAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCAT
CGCGCTCGCCGCGCGCGACGCCATCGCCATGACGGGCGGGCCGTCGTTCGACGTGCCGAC
GGGGCGGCGCGACGGGCTGGTCTCCAACCTCCGCGACGCCGACGTGCTTCCGGACGTCGT
CGATTCCATCCAGGTGCTCCGCTCCAGGTTCGCCGCCAGCGGCCTCGACGACCGCGACCT
CGTCCTCCTCACAGCGGCGCACACGATCGGCACGACGGCGTGCTTCTTCGTGAAGGACAG
GCTGTACAACTACCGCCTCCGCGGCGGCGGCGTCGGGTCGGACCCGTCCATCCCGGCGGC
GTTCCTGGCGGAGCTCAAGGCGCGGTGCGCGCCGGGCGACTTCAACACGCGCGTCGCGCT
GGACCGCGGCAGCGAGCGCGACTTCGACGACTCCATCCTCCGCAACATCCGCTCCGGCCT
CGCCGTCATCGCCTCTGACGCCGCGCTCGACGCCAGCAACGCCACGCGCGGCCTCGTCAC
GGCCTACCTCGGCGCCGCGTCGCGCAGGTTCGAGCGGGACTTCGTCGCCGCCATGGTGAA
GATGGGCACCATCGGCGCGCTCACCGGCGACGACGGCGAGGTCAGGGACGTGTGCTCCCA
GTTCAACACCGACTGATTGATCGATCGATCGATCCATCGGTCGAACACTGTACATTTCTT
CTGAAAGATCAAATCGATTCAAGAATTCAACAA

consensusID : consensus_5155#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [GCCGGTGCNCGCCGGGCGACTTCAAACNACCCCGTCGCGCTGGACCGCGGCAGCGAGCGCGACTTCGACGGCGAGGTCAGGGACGTGTGCTCCCAGTTCAACACCGACTGATTGATCGATCGATCGATCCATCGGTCGAACACTGTACATTTCTTCTGAAAGATCAAATCGATTCAAGAATTCAACAACAAATGAAATGATATACTCCATGAAAGAAAAGATTAGGATCTCTCTCTTTCTGTGTGTGTGTTCGTGTGTGTACTCCAAATGTGATACAAATTTCACATTGAAATTCGGCAGAATTTGAGGAATTAAGCTTGAAAGTTTGCTGGAGAAAAAAAA]

[+] EMBL AU033088             [GCCGGTGCNCGCCGGGCGACTTCAAACNACCCCGTCGCGCTGGACCGCGGCAGCGAGCGCGACTTCGACGGCGAGGTCAGGGACGTGTGCTCCCAGTTCAACACCGACTGATTGATCGATCGATCGATCCATCGGTCGAACACTGTACATTTCTTCTGAAAGATCAAATCGATTCAAGAATTCAACAACAAATGAAATGATATACTCCATGAAAGAAAAGATTAGGATCTCTCTCTTTCTGTGTGTGTGTTCGTGTGTGTACTCCAAATGTGATACAAATTTCACATTGAAATTCGGCAGAATTTGAGGAATTAAGCTTGAAAGTTTGCTGGAGAAAAAAAA]




>consensus_5155#1
GCCGGTGCNCGCCGGGCGACTTCAAACNACCCCGTCGCGCTGGACCGCGGCAGCGAGCGC
GACTTCGACGGCGAGGTCAGGGACGTGTGCTCCCAGTTCAACACCGACTGATTGATCGAT
CGATCGATCCATCGGTCGAACACTGTACATTTCTTCTGAAAGATCAAATCGATTCAAGAA
TTCAACAACAAATGAAATGATATACTCCATGAAAGAAAAGATTAGGATCTCTCTCTTTCT
GTGTGTGTGTTCGTGTGTGTACTCCAAATGTGATACAAATTTCACATTGAAATTCGGCAG
AATTTGAGGAATTAAGCTTGAAAGTTTGCTGGAGAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5155#0      CATCACCTGCAACCTCACACTTGTGCTTTTGCTAGCTTGTCCCTCCTCAGAAATGGCCAT 60
consensus_5155#1      ------------------------------------------------------------
                                                                                  

consensus_5155#0      CCTGGCGTCCATGGCGGCAATGGCGTTCTTGCTGCTGATGGAGGCAATGAGCGTGTCACA 120
consensus_5155#1      ------------------------------------------------------------
                                                                                  

consensus_5155#0      CGGCCAGCTTCAGGTCGGGTTCTACTCCGACTCCTGCCCCGACGCTGAGGACATCGTCAC 180
consensus_5155#1      ------------------------------------------------------------
                                                                                  

consensus_5155#0      CGCCGCCGTCCAGGACGCCGCCGGCTCCGACCCCACCATCCTCCCCGCCCTCCTCCGCCT 240
consensus_5155#1      ------------------------------------------------------------
                                                                                  

consensus_5155#0      CCAGTTCCACGACTGCTTCGTCCGGGGGTGCGACGCGTCGGTGCTGATCCGGAGCGCGCG 300
consensus_5155#1      ------------------------------------------------------------
                                                                                  

consensus_5155#0      GAACGACGCGGAGGTGAACAACAACAAGCACCAGGGGCTGCGCGGGCAGGCCGTCGTGGA 360
consensus_5155#1      ------------------------------------------------------------
                                                                                  

consensus_5155#0      CGCGGCCAAGGCGGAGCTCGAGGACCAGTGCCCCGGCGTCGTCTCCTGCGCCGACATCAT 420
consensus_5155#1      ------------------------------------------------------------
                                                                                  

consensus_5155#0      CGCGCTCGCCGCGCGCGACGCCATCGCCATGACGGGCGGGCCGTCGTTCGACGTGCCGAC 480
consensus_5155#1      ------------------------------------------------------------
                                                                                  

consensus_5155#0      GGGGCGGCGCGACGGGCTGGTCTCCAACCTCCGCGACGCCGACGTGCTTCCGGACGTCGT 540
consensus_5155#1      ------------------------------------------------------------
                                                                                  

consensus_5155#0      CGATTCCATCCAGGTGCTCCGCTCCAGGTTCGCCGCCAGCGGCCTCGACGACCGCGACCT 600
consensus_5155#1      ------------------------------------------------------------
                                                                                  

consensus_5155#0      CGTCCTCCTCACAGCGGCGCACACGATCGGCACGACGGCGTGCTTCTTCGTGAAGGACAG 660
consensus_5155#1      ------------------------------------------------------------
                                                                                  

consensus_5155#0      GCTGTACAACTACCGCCTCCGCGGCGGCGGCGTCGGGTCGGACCCGTCCATCCCGGCGGC 720
consensus_5155#1      ------------------------------------------------------------
                                                                                  

consensus_5155#0      GTTCCTGGCGGAGCTCAAGGCGCGGTGCGCGCCGGGCGACTTCAA-CACGCGCGTCGCGC 779
consensus_5155#1      -------------------GC-CGGTGCNCGCCGGGCGACTTCAAACNACCCCGTCGCGC 40
                                         ** ****** **************** *   * ********

consensus_5155#0      TGGACCGCGGCAGCGAGCGCGACTTCGACGACTCCATCCTCCGCAACATCCGCTCCGGCC 839
consensus_5155#1      TGGACCGCGGCAGCGAGCGCGACTTCGACGGCGAGGTC---AGGGACGTGTGCTCCCAGT 97
                      ****************************** *    **    *  ** *  *****    

consensus_5155#0      TCGCCGTCATCGCCTCTGACGCCGCGCTCGA--CGCCAGC--AACGCCACGCGCGGCCTC 895
consensus_5155#1      TCAACACCGAC-TGATTGATCGATCGATCGATCCATCGGTCGAACACTGTACATTTCTTC 156
                      **  *  *  *     ***     ** ****  *  * *   *** *    *    * **

consensus_5155#0      GTCACGGCCTACCTCGGCGCCGCGTCGCGCAGGTTCGAGCGGGACTTCGTCGCCGCCATG 955
consensus_5155#1      -TGAAAGATCAAATCGATTCAAGA--ATTCAACAACAAATGAAATGATATA--CTCCATG 211
                       * *  *   *  ***   *         **    * *  *  *     *   * *****

consensus_5155#0      GTGAAGATGGGCACCATCGGCGCGCTCACCGGCGACGACGGCGAGGTCAGGGACGTGTGC 1015
consensus_5155#1      AAAGAAAAGATTAGGATCT-----CTCTCTTTCTGTG--TGTGTGTTC--GTGTGTGTAC 262
                          * * *   *  ***      *** *   *   *   * * * **  *   **** *

consensus_5155#0      TCCCAGTTCAACACCGACTGATTGATCGA--TCGATCGATCCATCGGTCGAACACTGTAC 1073
consensus_5155#1      TCCAAATGTGATACAAATTTCACATTGAAATTCGGCAGAATTTGAGGAATTAAGCTTGAA 322
                      *** * *   * **  * *      *  *  ***   **      **    *  **  * 

consensus_5155#0      ATTTCTTCTGAAAGATCAAATCGATTCAAGAATTCAACAA 1113
consensus_5155#1      AGTTTGCTGGAGAAAAAAAA-------------------- 342
                      * **     ** * *  ***