These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5156#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1606 fasta sequence [ACGGCGACGTGGTCGCCGCGCACGACGCGACACGAGCCGAGATCCCCAACCCACCGGCGGCGGCGCGAGCACACGATCCGCCCCCCATCTCCGGCGCCGGCGATGGCGATGCCGTCGAGCGCCTCCGCCACGGCGCGGATGCTCACCGTGCCGGCGCTGCTCCTCCTCCTCTCCTCCGCCGCGCTCCTTGTCTTCCTCATCCTACCGTCCCTCTCCCCGTCCCCCGCCGCGCACCTCTGCGCCTGCTCGCCCCCGACCACCACGCACACCACCACTACCGTCACCACCACCACCACCACCGGCTCCCCGGCGCCCGTCACCACCTCCCCCGCCGACGTCGCCTGGCTCAAGTCTCAGCTCGCCTCCAACTCCCTCCCGCTCCTCGCCTNCCACGACGCATGGCACCGCCTCCGCAAGGGCATCAACCCCCGCACCCGCGAGCAGCAGCTCTTCGACATCAACAGGCACCATGGGATCTCGCATTACCCGGATGAAGAGGCAACTAACCACACTGCGCTGCCTTGCCCCGGGGAGCTCCTGGTTGAAGAGCATCACAGTAACTATGGCGAGCCGTGGGCCGGTGGCCGTGATGTCTTTGAATTCCTTGCTAATGCCTCCGCGCTCACGCCTAGAGACCAAGTTCTGGAAATTGGATGCGGGACTCTTCGCGTCGGTCTTCACTTCATTCGGTTTCTGGAGGCGGCCAAGTTCCATTGTCTGGAGCGGGATGAGCTGTCCCTCATGGCTGCACTTCGCTATGAACTGCCAGCGCAGGGGCTGTTGTACAAGCGGCCAATGATCGTGAGAGGGGAGGATATGGATTTCAGCAGGTTTGGGGATACGGTTATGTATGATCTTATTTATGCAAGTGCTGTGTTCCTTCACATTCCGGATAAGCTTGTTTGGACTGGGCTCGAGAGGCTTGCAGGGAAGCTGAGGCCACAGAGAGGGAGGATTTTTGTGTCACATAATATTAAGTTTTGCTCAAGATTGGGTGGTGATGGGTGCACACGGCGGCTCACGGAATTGGGGCTCGAGTATGTGGGGAAGCACACTCATGATAGCTTGTTGTTCAACCATTATGAGATATGGTTTGAATTCCGAAGGCCAAAAGTTTAAGTCTTGATAGTTGGAAGATAGACTGGTGTGGCATCCATTTTGTAATTTTGGTGGTGTGAAGTGCAGAGCAAGCTATGGCCTGTAGTTGTATGCCAATGAGCTCTGACCTGAGATCGAGATCATTGTTTGCTGGGTGTTGGTTCACTTTCGACCACACACAACACTCAGGATGAAAGATCCAATCGCCCTTGAGCCTTCCGAATTACATCTGCCAGTGTATTGCAGGTGGCAGCATCACACGCCTGAATTGGTCCAAGACAAGACTGCAGAAGAAGAAGAGGAAGAGGAAGCAGAGGCTGAAGGGTGGCCGTCGCCGTCGGAGGCTGAAGAAATCGCTGCCGCCGGCGCCGGGGACCCCTTGGAGCGCGTCCTTTTGTTGTATCTAGACGGGTCAGTGTAACCATCCTCGAAAGAGACTCGCATCCTCTTCCTTGTGCAAGTAGTATCTATGTACTTAAAACGAAGATGCATTGGATGATGGCGTCTT] [+] EMBL AU172716 [ACGGCGACGTGGTCGCCGCGCACGACGCGACACGAGCCGAGATCCCCAACCCACCGGCGGCGGCGCGAGCACACGATCCGCCCCCCATCTCCGGCGCCGGCGATGGCGATGCCGTCGAGCGCCTCCGCCACGGCGCGGATGCTCACCGTGCCGGCGCTGCTCCTCCTCCTCTCCTCCGCCGCGCTCCTTGTCTTCCTCATCCTACCGTCCCTCTCCCCGTCCCCCGCCGCGCACCTCTGCGCCTGCTCGCCCCCGACCACCACGCACACCACCACTACCGTCACCACCACCACCACCACCGGCTCCCCGGCGCCCGTCACCACCTCCCCCGCCGACGTCGCCTGGCTCAAGTCTCAGCTCGCCTCCAACTCCCTCCCGCTCCTCGCCTNCCACGACGCATGGCACCGCCTCCGCAAGGGCATCAACC ] [+] EMBL AK073297 [ CGCACGACGCGACACGAGCCGAGATCCCCAACCCACCGGCGGCGGCGCGAGCACACGATCCGCCCCCCATCTCCGGCGCCGGCGATGGCGATGCCGTCGAGCGCCTCCGCCACGGCGCGGATGCTCACCGTGCCGGCGCTGCTCCTCCTCCTCTCCTCCGCCGCGCTCCTTGTCTTCCTCATCCTACCGTCCCTCTCCCCGTCCCCCGCCGCGCACCTCTGCGCCTGCTCGCCCCCGACCACCACGCACACCACCACTACCGTCACCACCACCACCACCACCGCCTCCCCGGCGCCCGTCACCACCTCCCCCGCCGACGTCGCCTGGCTCAAGTCTCAGCTCGCCTCCAACTCCCTCCCGCTCCTCGCCTCCCACGACGCATGGCACCGCCTCCGCAAGGGCATCAACCCCCGCACCCGCGAGCAGCAGCTCTTCGACATCAACAGGCACCATGGGATCTCGCATTACCCGGATGAAGAGGCAACTAACCACACTGCGCTGCCTTGCCCCGGGGAGCTCCTGGTTGAAGAGCATCACAGTAACTATGGCGAGCCGTGGGCCGGTGGCCGTGATGTCTTTGAATTCCTTGCTAATGCCTCCGCGCTCACGCCTAGAGACCAAGTTCTGGAAATTGGATGCGGGACTCTTCGCGTCGGTCTTCACTTCATTCGGTTTCTGGAGGCGGCCAAGTTCCATTGTCTGGAGCGGGATGAGCTGTCCCTCATGGCTGCACTTCGCTATGAACTGCCAGCGCAGGGGCTGTTGTACAAGCGGCCAATGATCGTGAGAGGGGAGGATATGGATTTCAGCAGGTTTGGGGATACGGTTATGTATGATCTTATTTATGCAAGTGCTGTGTTCCTTCACATTCCGGATAAGCTTGTTTGGACTGGGCTCGAGAGGCTTGCAGGGAAGCTGAGGCCACAGAGAGGGAGGATTTTTGTGTCACATAATATTAAGTTTTGCTCAAGATTGGGTGGTGATGGGTGCACACGGCGGCTCACGGAATTGGGGCTCGAGTATGTGGGGAAGCACACTCATGATAGCTTGTTGTTCAACCATTATGAGATATGGTTTGAATTCCGAAGGCCAAAAGTTTAAGTCTTGATAGTTGGAAGATAGACTGGTGTGGCATCCATTTTGTAATTTTGGTGGTGTGAAGTGCAGAGCAAGCTATGGCCTGTAGTTGTATGCCAATGAGCTCTGACCTGAGATCGAGATCATTGTTTGCTGGGTGTTGGTTCACTTTCGACCACACACAACACTCAGGATGAAAGATCCAATCGCCCTTGAGCCTTCCGAATTACATCTGCCAGTGTATTGCAGGTGGCAGCATCACACGCCTGAATTGGTCCAAGACAAGACTGCAGAAGAAGAAGAGGAAGAGGAAGCAGAGGCTGAAGGGTGGCCGTCGCCGTCGGAGGCTGAAGAAATCGCTGCCGCCGGCGCCGGGGACCCCTTGGAGCGCGTCCTTTTGTTGTATCTAGACGGGTCAGTGTAACCATCCTCGAAAGAGACTCGCATCCTCTTCCTTGTGCAAGTAGTATCTATGTACTTAAAACGAAGATGCATTGGATGATGGCGTCTT] consensusID : consensus_5156#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [GAAAAGGAAACCANAGGCTTAAAGGNTGCCCGTCCCCGTCGAAGNCTAAAAAAATCCCTGCCGCCGGGCGCCGGGGACCCCTTGGAGCGGGTCCTTTTGTTGTATCTAGACGGGTCAGTGTAACCATCCTCGAAAGAGACTCGCATCCTCTTCCTTGTGCAAGTAGTATCTATGTACTTAAAACGAAGATGCATTGGATGATGGCGTCTTCTGTGCATTCAAAAAA] [+] EMBL AU172717 [GAAAAGGAAACCANAGGCTTAAAGGNTGCCCGTCCCCGTCGAAGNCTAAAAAAATCCCTGCCGCCGGGCGCCGGGGACCCCTTGGAGCGGGTCCTTTTGTTGTATCTAGACGGGTCAGTGTAACCATCCTCGAAAGAGACTCGCATCCTCTTCCTTGTGCAAGTAGTATCTATGTACTTAAAACGAAGATGCATTGGATGATGGCGTCTTCTGTGCATTCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5156#0 ACGGCGACGTGGTCGCCGCGCACGACGCGACACGAGCCGAGATCCCCAACCCACCGGCGG 60 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 CGGCGCGAGCACACGATCCGCCCCCCATCTCCGGCGCCGGCGATGGCGATGCCGTCGAGC 120 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 GCCTCCGCCACGGCGCGGATGCTCACCGTGCCGGCGCTGCTCCTCCTCCTCTCCTCCGCC 180 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 GCGCTCCTTGTCTTCCTCATCCTACCGTCCCTCTCCCCGTCCCCCGCCGCGCACCTCTGC 240 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 GCCTGCTCGCCCCCGACCACCACGCACACCACCACTACCGTCACCACCACCACCACCACC 300 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 GGCTCCCCGGCGCCCGTCACCACCTCCCCCGCCGACGTCGCCTGGCTCAAGTCTCAGCTC 360 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 GCCTCCAACTCCCTCCCGCTCCTCGCCTNCCACGACGCATGGCACCGCCTCCGCAAGGGC 420 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 ATCAACCCCCGCACCCGCGAGCAGCAGCTCTTCGACATCAACAGGCACCATGGGATCTCG 480 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 CATTACCCGGATGAAGAGGCAACTAACCACACTGCGCTGCCTTGCCCCGGGGAGCTCCTG 540 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 GTTGAAGAGCATCACAGTAACTATGGCGAGCCGTGGGCCGGTGGCCGTGATGTCTTTGAA 600 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 TTCCTTGCTAATGCCTCCGCGCTCACGCCTAGAGACCAAGTTCTGGAAATTGGATGCGGG 660 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 ACTCTTCGCGTCGGTCTTCACTTCATTCGGTTTCTGGAGGCGGCCAAGTTCCATTGTCTG 720 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 GAGCGGGATGAGCTGTCCCTCATGGCTGCACTTCGCTATGAACTGCCAGCGCAGGGGCTG 780 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 TTGTACAAGCGGCCAATGATCGTGAGAGGGGAGGATATGGATTTCAGCAGGTTTGGGGAT 840 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 ACGGTTATGTATGATCTTATTTATGCAAGTGCTGTGTTCCTTCACATTCCGGATAAGCTT 900 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 GTTTGGACTGGGCTCGAGAGGCTTGCAGGGAAGCTGAGGCCACAGAGAGGGAGGATTTTT 960 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 GTGTCACATAATATTAAGTTTTGCTCAAGATTGGGTGGTGATGGGTGCACACGGCGGCTC 1020 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 ACGGAATTGGGGCTCGAGTATGTGGGGAAGCACACTCATGATAGCTTGTTGTTCAACCAT 1080 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 TATGAGATATGGTTTGAATTCCGAAGGCCAAAAGTTTAAGTCTTGATAGTTGGAAGATAG 1140 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 ACTGGTGTGGCATCCATTTTGTAATTTTGGTGGTGTGAAGTGCAGAGCAAGCTATGGCCT 1200 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 GTAGTTGTATGCCAATGAGCTCTGACCTGAGATCGAGATCATTGTTTGCTGGGTGTTGGT 1260 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 TCACTTTCGACCACACACAACACTCAGGATGAAAGATCCAATCGCCCTTGAGCCTTCCGA 1320 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 ATTACATCTGCCAGTGTATTGCAGGTGGCAGCATCACACGCCTGAATTGGTCCAAGACAA 1380 consensus_5156#1 ------------------------------------------------------------ consensus_5156#0 GACTGCAGAAGAAGAAGAGGAAGAGGAAGCAGAGGCT-GAAGGGTGGCCGTCGCCGTCGG 1439 consensus_5156#1 ------------------GAAAAGGAAACCANAGGCTTAAAGGNTGCCCGTCCCCGTCGA 42 * ** * ** ** ***** **** ** ***** ****** consensus_5156#0 AGGCTGAAGAAATCGCTGCCGCCGG-CGCCGGGGACCCCTTGGAGCGCGTCCTTTTGTTG 1498 consensus_5156#1 AGNCTAAAAAAATCCCTGCCGCCGGGCGCCGGGGACCCCTTGGAGCGGGTCCTTTTGTTG 102 ** ** ** ***** ********** ********************* ************ consensus_5156#0 TATCTAGACGGGTCAGTGTAACCATCCTCGAAAGAGACTCGCATCCTCTTCCTTGTGCAA 1558 consensus_5156#1 TATCTAGACGGGTCAGTGTAACCATCCTCGAAAGAGACTCGCATCCTCTTCCTTGTGCAA 162 ************************************************************ consensus_5156#0 GTAGTATCTATGTACTTAAAACGAAGATGCATTGGATGATGGCGTCTT------------ 1606 consensus_5156#1 GTAGTATCTATGTACTTAAAACGAAGATGCATTGGATGATGGCGTCTTCTGTGCATTCAA 222 ************************************************ consensus_5156#0 ---- consensus_5156#1 AAAA 226 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||