cluster # 5168

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5168 cluster # 5168 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5168#0 length = 788 sequences # 1

consensus_5168#1 length = 540 sequences # 2

consensusID : consensus_5168#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 788
fasta sequence

                              [GTTATAGCATACATAGCCAGTGAAAAGGAGGAGCTTAGTAATAACAAGATTCTTCATTGCACTCTTGTGCTTTTGGATGAGGAGGCCGGGTGCTAATGCAATGTTTGACATTTACTTTATTTTTTCAGTTAATGTGGTAGTGACCGCCGTTTTTTTTTATTTTTTCTCATTTTCGTCTGCTCTCCTTCCGCTCGTACTTTATTTTAAGTTAATACCGCCCCCCTATATTTTTCGCCCGCTCTTCTCTTCTCTTATCTGTGTCTCACTTGTTTCAGTGTGTTTTATTTTTCCGCTGTCACTTCGTTCTTTTCTTTCTGCGATTGTACCCACTTTTCTTTCTGATTACAACACTCCAACCTAATACTTATCTTACTTCGTGTACGTGGTTGTTGCTTTTTATCTTATCGATAATACCTCTTGCTGTCTTCTTTTGTGAGTTCAGAATGTTACTGTTCTTTTTTTACATTGTCTCATCTTCATATATTATGTCTTTATATGCATTGTTTCTTTTCTGTTTCTTATATGTTTTTGCATCTTTTTTTTTATGTTTTTGTTTTTTAATATGTTGTATTCCCCTCTCTTCTTCCACTCCATAATCATTTCTCTTTACCTTAATTTTTGTATCTTTTTTACTTTTATATTATTCTGTTTTTTCCATTTCTTCCACTTTCATCATCACTGTTATTTTTACTGTAGTGTTTCTTTTGTGTATGTTTGTACGTCGAGCAATCTACTATTTACGCGACTTTTTTCTATATTTTCTAATAGGTACAGCCATAGATCCGTTT]

[+] EMBL BE040013             [GTTATAGCATACATAGCCAGTGAAAAGGAGGAGCTTAGTAATAACAAGATTCTTCATTGCACTCTTGTGCTTTTGGATGAGGAGGCCGGGTGCTAATGCAATGTTTGACATTTACTTTATTTTTTCAGTTAATGTGGTAGTGACCGCCGTTTTTTTTTATTTTTTCTCATTTTCGTCTGCTCTCCTTCCGCTCGTACTTTATTTTAAGTTAATACCGCCCCCCTATATTTTTCGCCCGCTCTTCTCTTCTCTTATCTGTGTCTCACTTGTTTCAGTGTGTTTTATTTTTCCGCTGTCACTTCGTTCTTTTCTTTCTGCGATTGTACCCACTTTTCTTTCTGATTACAACACTCCAACCTAATACTTATCTTACTTCGTGTACGTGGTTGTTGCTTTTTATCTTATCGATAATACCTCTTGCTGTCTTCTTTTGTGAGTTCAGAATGTTACTGTTCTTTTTTTACATTGTCTCATCTTCATATATTATGTCTTTATATGCATTGTTTCTTTTCTGTTTCTTATATGTTTTTGCATCTTTTTTTTTATGTTTTTGTTTTTTAATATGTTGTATTCCCCTCTCTTCTTCCACTCCATAATCATTTCTCTTTACCTTAATTTTTGTATCTTTTTTACTTTTATATTATTCTGTTTTTTCCATTTCTTCCACTTTCATCATCACTGTTATTTTTACTGTAGTGTTTCTTTTGTGTATGTTTGTACGTCGAGCAATCTACTATTTACGCGACTTTTTTCTATATTTTCTAATAGGTACAGCCATAGATCCGTTT]




>consensus_5168#0
GTTATAGCATACATAGCCAGTGAAAAGGAGGAGCTTAGTAATAACAAGATTCTTCATTGC
ACTCTTGTGCTTTTGGATGAGGAGGCCGGGTGCTAATGCAATGTTTGACATTTACTTTAT
TTTTTCAGTTAATGTGGTAGTGACCGCCGTTTTTTTTTATTTTTTCTCATTTTCGTCTGC
TCTCCTTCCGCTCGTACTTTATTTTAAGTTAATACCGCCCCCCTATATTTTTCGCCCGCT
CTTCTCTTCTCTTATCTGTGTCTCACTTGTTTCAGTGTGTTTTATTTTTCCGCTGTCACT
TCGTTCTTTTCTTTCTGCGATTGTACCCACTTTTCTTTCTGATTACAACACTCCAACCTA
ATACTTATCTTACTTCGTGTACGTGGTTGTTGCTTTTTATCTTATCGATAATACCTCTTG
CTGTCTTCTTTTGTGAGTTCAGAATGTTACTGTTCTTTTTTTACATTGTCTCATCTTCAT
ATATTATGTCTTTATATGCATTGTTTCTTTTCTGTTTCTTATATGTTTTTGCATCTTTTT
TTTTATGTTTTTGTTTTTTAATATGTTGTATTCCCCTCTCTTCTTCCACTCCATAATCAT
TTCTCTTTACCTTAATTTTTGTATCTTTTTTACTTTTATATTATTCTGTTTTTTCCATTT
CTTCCACTTTCATCATCACTGTTATTTTTACTGTAGTGTTTCTTTTGTGTATGTTTGTAC
GTCGAGCAATCTACTATTTACGCGACTTTTTTCTATATTTTCTAATAGGTACAGCCATAG
ATCCGTTT

consensusID : consensus_5168#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 540
fasta sequence

                              [NATAGNCTTATGTCCCTGCNCAGTGTCTCGTGCCCTNTGTCCCCCGTGTTATCATGTGGTAGCATCTTGNNAGCATACACATGATCCATATCGTATTGCTCTATAGGTGTANAGCATACATATGCCATGTTGAAAAGGATGGAGCTTAGTNATANACAGGATCCCCCATTGCACCCCTGTGCTTTCTGGATGAGGAGGCCGGTGCANAATGCAATGTGGGACAGTTACTTCATAGTTACAGTTACTGTGCTAGTAACAACGGTTTGGGTTTGGGTTCTCTCTTGTGGAAGAGGAGAGGAGGTAGTAGTTACTCCCTGTCATAACTACTAAGTTTTGCTGAAACCTTATAGGTCTTTATTACTCTTTTAGTTACTCTGTGTTTGATATGGTAGATGTACATATATGTATATCACAGATGGTGGGGGGAATGGTAGTAGGAGATGGTGCTCCCGGTGTTCATATTCGTGCTTGCCTGTAATAAAGATGAGAATGCTGCTCCTGATGGCCTTCAATGTCAGTCAGTAATTTCCTTCAAAAAAA]

[+] EMBL BI806914             [NATAGNCTTATGTCCCTGCNCAGTGTCTCGTGCCCTNTGTCCCCCGTGTTATCATGTGGTAGCATCTTGNNAGCATACACATGATCCATATCGTATTGCTCTATAGGTGTANAGCATACATATGCCATGTTGAAAAGGATGGAGCTTAGTNATANACAGGATCCCCCATTGCACCCCTGTGCTTTCTGGATGAGGAGGCCGGTGCANAATGCAATGTGGGACAGTTACTTCATAGTTACAGTTACTGTGCTAGTAACAACGGTTTGGGTTTGGGTTCTCTCTTGTGGAAGAGGAGAGGAGGTAGTAGTTACTCCCTGTCATAACTACTAAGTTTTGCTGAAACCTTATAGGTCTTTATTACTCTTTTAGTTACTCTGTGTTTGATATGGTAGATGTACATATATGTATATCACAGATGGTGGGGGGAATGGTAGTAGGAGATGGTGCTCCCGGTGTTCATATTCGTGCTTGCCTGTAATAAAGATGAGAATGCTGCTCCTGATGGCCTTCAATGTCAGTCAGTAATTTCCTTCAAAAAAA]
[-] EMBL CF337716             [                                                                                                            tTATAGCATACATA GCCA G TGAAAAGGA GGAGCTTAGTAATA ACAGGATCCCCCATTGCACCCCTGTGC TTCTGGATGAGGAGGCCGGTGCA AATGCAATGTGGGACAGTTACTTCATAGTTACAGTTACTGTGCTAGTAACAACGGTTTGGGTTTGGGTTCTCTCTTGTGGAAGAGGAGAGGAGGTAGTAGTTACTCCCTGTCATAACTACTAAGTTTTGCTGAAACCTTATAGGTCTTTATTACTCTTTTAaaaaa                                                                                                                                                                       ]




>consensus_5168#1
NATAGNCTTATGTCCCTGCNCAGTGTCTCGTGCCCTNTGTCCCCCGTGTTATCATGTGGT
AGCATCTTGNNAGCATACACATGATCCATATCGTATTGCTCTATAGGTGTANAGCATACA
TATGCCATGTTGAAAAGGATGGAGCTTAGTNATANACAGGATCCCCCATTGCACCCCTGT
GCTTTCTGGATGAGGAGGCCGGTGCANAATGCAATGTGGGACAGTTACTTCATAGTTACA
GTTACTGTGCTAGTAACAACGGTTTGGGTTTGGGTTCTCTCTTGTGGAAGAGGAGAGGAG
GTAGTAGTTACTCCCTGTCATAACTACTAAGTTTTGCTGAAACCTTATAGGTCTTTATTA
CTCTTTTAGTTACTCTGTGTTTGATATGGTAGATGTACATATATGTATATCACAGATGGT
GGGGGGAATGGTAGTAGGAGATGGTGCTCCCGGTGTTCATATTCGTGCTTGCCTGTAATA
AAGATGAGAATGCTGCTCCTGATGGCCTTCAATGTCAGTCAGTAATTTCCTTCAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5168#0      GTTATAGCATACATAGCCAGTGAAAAGGAGGAGCTTAGTAATAACAAGATTCTTCATTGC 60
consensus_5168#1      ------------------------------------------------------------
                                                                                  

consensus_5168#0      ACTCTTGTGCTTTTGGATGAGGAGGCCGGGTGCTAATGCAATGTTTGACATTTACTTTAT 120
consensus_5168#1      ------------------------------------------------------------
                                                                                  

consensus_5168#0      TTTTTCAGTTAATGTGGTAGTGACCGCCGTTTTTTTTTATTTTTTCTCATTTTCGTCTGC 180
consensus_5168#1      ---------------------------NATAGNCTTATGTCCCTGCNCAGTGTCTCGTGC 33
                                                   *    ** * *   * * ** * **   ***

consensus_5168#0      TCTCCTTCCGCTCGTACTTTATTTTAAGTTAATACCGCCCCCCTATATTTTTCGCCCGCT 240
consensus_5168#1      CCTNTGTCC-CCCGTG--TTATCATGTGGTAGCATCTTGNNAGCATACACATGATCCA-T 89
                       **   *** * ***   ****  *  * **  * *        ***    *   **  *

consensus_5168#0      CTTCTCTTCTCTTATCTGTGTCTCACTTGTTTCAGTGTGTTTTATTTTTCCGC-TGTCAC 299
consensus_5168#1      ATCGTATTGCTCTATAGGTGTANAGCATAC----ATATGCCATGTTGAAAAGGATGGAGC 145
                       *  * **    ***  ****    * *       * **   * **     *  **   *

consensus_5168#0      TTCGTTCTTTTCTT--TCTGCGATTGTACCCACTTTTCTTTCTGATTACAACACTCCAAC 357
consensus_5168#1      TTAGTNATANACAGGATCCCCCATTGCACCC-CTGTGCTTTCTGGATG-AGGAGGCCGGT 203
                      ** **  *   *    **  * **** **** ** * *******  *  *  *  **   

consensus_5168#0      CTAATACTTATCTTACTTCGTGTACGTGGTTGTTGC--TTTTTATCTTATCGATAATACC 415
consensus_5168#1      GCANAATGCAATGTGGGACAGTTACTTCATAGTTACAGTTACTGTGCTAGTAACAACGGT 263
                        *  *   *   *    *   *** *  * *** *  **  * *  **   * **    

consensus_5168#0      TCTTGCT---GTCTTCTTTTGTGAGTTCAGAATGTTACTGTTCTTTTTTTACATTGTCTC 472
consensus_5168#1      TTGGGTTTGGGTTCTCTCTTGTGGAAGAGGAGAGGAGGTAGTAGTTACTCCC--TGTCAT 321
                      *   * *   **  *** *****      **  *    *  *  **  *  *  ****  

consensus_5168#0      ATCTTCATATATTATGTCTTTATATGCATTGTTTCTTTTCTGTTTCTTATATGTTTTTGC 532
consensus_5168#1      AACTAC-TAAGTTTTG--CTGAAACCTTATAGGTCTTTATTACTCTTTTAGTTACTCTGT 378
                      * ** * **  ** **   * * *     *   *****  *  *  **   *   * ** 

consensus_5168#0      ATCTTTTTTTTTATGTTTTTGTTTTTTAATATGTTGTATTCCCCTCTCTTCTTCCACTCC 592
consensus_5168#1      GTTTGATATGGTAGATGTACATATAT--GTATATCACAGATGGTGGGGGGAATGGTAGTA 436
                       * *  * *  **  * *   * * *   *** *   *              *       

consensus_5168#0      ATAATCATTTCTCTTTACCTTAATTTTTGTATCTTTTTTACTTTTATATTATTCTGTTTT 652
consensus_5168#1      GGAGATGGTGCTCCCGGTGTTCATATTCGTGCTTGCCTGTAATAAAGATGAGAATGCTGC 496
                        *     * ***      ** ** ** **   *   *    *  * ** *   ** *  

consensus_5168#0      TTCC-ATTTCTTCCACTTTCATCATCACTGTTATTTTTACTGTAGTGTTTCTTTTGTGTA 711
consensus_5168#1      TCCTGATGGCCTTCAATGTCA--GTCAGTAATTTCCTTCAAAAAAA-------------- 540
                      * *  **  * * ** * ***   *** *  * *  **     *                

consensus_5168#0      TGTTTGTACGTCGAGCAATCTACTATTTACGCGACTTTTTTCTATATTTTCTAATAGGTA 771
consensus_5168#1      ------------------------------------------------------------
                                                                                  

consensus_5168#0      CAGCCATAGATCCGTTT 788
consensus_5168#1      -----------------