cluster # 5170

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Oryza sativa
cluster # 5170 cluster # 5170 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5170#0 length = 519 sequences # 2

consensus_5170#1 length = 356 sequences # 1

consensusID : consensus_5170#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 519
fasta sequence

                              [GACAACAAGGGCCACAAAATCCGGCCAGGGATTTGGAANTCCGGTTTTCTTTGCANCCGATCCCGGGNAGAAAACTGCCGCAAAGTTTTGGAAGGAAGGGCCTCCAGGGATTAGGATTAGCCAAAAGCTGCAAAACTTGGTTTGGNAAGCCNTCCACGTAATCAAAAGGATGGATGGGCTTAAATCTATAGCCCATTTTCACGTATCAAAAGACTGCTTCAGACGTTTACTGCTAAAAGTTTGTTCCAATACTTGCTGCAATATGCACCGTGTTTGTTTCATTGCCGATACATTCATACTTGTGCCACTGTTGAACTTACAAGACCAATTGAGCAGAAATTTTCTGAAGCTATATTCCTGTCAGTTCTGTAGTTTGTATTCAGGTAGCCAGGCCCATGGGCCACAACTCGAAACAGGTTTCGGCCCAATCGGCTTGTATATCTGATTCAGTAGCACTGTGGCAATTCACCAATCAGAACTCAGAAATTCAGAACTGAACAGTTTGTTTTCCAAAAAAAA]

[+] EMBL AU031989             [GACAACAAGGGCCACAAAATCCGGCCAGGGATTTGGAANTCCGGTTTTCTTTGCANCCGATCCCGGGNAGAAAACTGCCGCAAAGTTTTGGAAGGAAGGGCCTCCAGGGATTAGGATTAGCCAAAAGCTGCAAAACTTGGTTTGGNAAGCCNTCCACGTAATCAAAAGGATGGATGGGCTTAAATCTATAGCCCATTTTCACGTATCAAAAGACTGCTTCAGACGTTTACTGCTAAAAGTTTGTTCCAATACTTGCTGCAATATGCACCGTGTTTGTTTCATTGCCGATACATTCATACTTGTGCCACTGTTGAACTTACAAGACCAATTGAGCAGAAATTTTCTGAAGCTATATTCCTGTCAGTTCTGTAGTTTGTATTCAGGTAGCCAGGCCCATGGGCCACAACTCGAAACAGGTTTCGGCCCAATCGGCTTGTATATCTGATTCAGTAGCACTGTGGCAATTCACCAATCAGAACTCAGAAATTCAGAACTGAACAGTTTGTTTTCCAAAAAAAA]
[+] EMBL AU070189             [                                                                                                                                    AAACTTGG TTGG AAG CAT CACGT ATCCAAAAGAT GAT GGCTT AATCTATAGCCCA TTTCACGTATCAAAAGACTGCTTCAGACGTTTACTGCTAAAAGTTTGTTCCAATACTTGCTGCAATATGCACCGTGTTTGTTTCATTGCCGATACATTCATACTTGTGCCACTGTTGAACTTACAAGACCAATTGAGCAGAAATTTTCTGAAGCTATATTCCTGTCAGTTCTGTAGTTTGTATTCAGGTAGCCAGGCCCATGGGCCACAACTCGAAACAGGTTTCGGCCCAATCGGCTTGTATATCTGATTCAGTAGCACTGTGGCAATTCACCAATCAGAACTCAGAAATTCAGAACTGAACAGTTTGTTTTCCAAAAAAAA]




>consensus_5170#0
GACAACAAGGGCCACAAAATCCGGCCAGGGATTTGGAANTCCGGTTTTCTTTGCANCCGA
TCCCGGGNAGAAAACTGCCGCAAAGTTTTGGAAGGAAGGGCCTCCAGGGATTAGGATTAG
CCAAAAGCTGCAAAACTTGGTTTGGNAAGCCNTCCACGTAATCAAAAGGATGGATGGGCT
TAAATCTATAGCCCATTTTCACGTATCAAAAGACTGCTTCAGACGTTTACTGCTAAAAGT
TTGTTCCAATACTTGCTGCAATATGCACCGTGTTTGTTTCATTGCCGATACATTCATACT
TGTGCCACTGTTGAACTTACAAGACCAATTGAGCAGAAATTTTCTGAAGCTATATTCCTG
TCAGTTCTGTAGTTTGTATTCAGGTAGCCAGGCCCATGGGCCACAACTCGAAACAGGTTT
CGGCCCAATCGGCTTGTATATCTGATTCAGTAGCACTGTGGCAATTCACCAATCAGAACT
CAGAAATTCAGAACTGAACAGTTTGTTTTCCAAAAAAAA

consensusID : consensus_5170#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [CATCACGTATCAAAAGATGATGGCTTAATCTATAGCCATTTCACGTATCAAAAGACTGCTTCAGACGTTTACTGCTAAAAGTTTGTTCCAATACTTGCTGCAATATGCACCGTGTTTGTTTCATTGCCGATACATTCATACTTGTGCCACTGTTGAACTTACAAGACCAATTGAGCAGAAATTTTCTGAAGCTATATTCCTGTCAGTTCTGTAGTTTGTATTCAGGTAGCCAGGCCCATGGGCCACAACTCGAAACAGGTTTCGGCCCAATCGGCTTGTATATCTGATTCAGTAGCACTGTGGCAATTCACCAATCAGAACTCAGAAATTCAGAGCTAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA754552             [CATCACGTATCAAAAGATGATGGCTTAATCTATAGCCATTTCACGTATCAAAAGACTGCTTCAGACGTTTACTGCTAAAAGTTTGTTCCAATACTTGCTGCAATATGCACCGTGTTTGTTTCATTGCCGATACATTCATACTTGTGCCACTGTTGAACTTACAAGACCAATTGAGCAGAAATTTTCTGAAGCTATATTCCTGTCAGTTCTGTAGTTTGTATTCAGGTAGCCAGGCCCATGGGCCACAACTCGAAACAGGTTTCGGCCCAATCGGCTTGTATATCTGATTCAGTAGCACTGTGGCAATTCACCAATCAGAACTCAGAAATTCAGAGCTAAAAAAAAAAAAAAAAAAA]




>consensus_5170#1
CATCACGTATCAAAAGATGATGGCTTAATCTATAGCCATTTCACGTATCAAAAGACTGCT
TCAGACGTTTACTGCTAAAAGTTTGTTCCAATACTTGCTGCAATATGCACCGTGTTTGTT
TCATTGCCGATACATTCATACTTGTGCCACTGTTGAACTTACAAGACCAATTGAGCAGAA
ATTTTCTGAAGCTATATTCCTGTCAGTTCTGTAGTTTGTATTCAGGTAGCCAGGCCCATG
GGCCACAACTCGAAACAGGTTTCGGCCCAATCGGCTTGTATATCTGATTCAGTAGCACTG
TGGCAATTCACCAATCAGAACTCAGAAATTCAGAGCTAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5170#0      GACAACAAGGGCCACAAAATCCGGCCAGGGATTTGGAANTCCGGTTTTCTTTGCANCCGA 60
consensus_5170#1      ------------------------------------------------------------
                                                                                  

consensus_5170#0      TCCCGGGNAGAAAACTGCCGCAAAGTTTTGGAAGGAAGGGCCTCCAGGGATTAGGATTAG 120
consensus_5170#1      ------------------------------------------------------------
                                                                                  

consensus_5170#0      CCAAAAGCTGCAAAACTTGGTTTGGNAAGCCNTCCACGTAATCAAAAGGATGGATGGGCT 180
consensus_5170#1      -------------------------------CATCACGTA-TCAAAAGA--TGATGG--C 24
                                                        ****** *******    *****   

consensus_5170#0      TAAATCTATAGCCCATTTTCACGTATCAAAAGACTGCTTCAGACGTTTACTGCTAAAAGT 240
consensus_5170#1      TTAATCTATAGCCA--TTTCACGTATCAAAAGACTGCTTCAGACGTTTACTGCTAAAAGT 82
                      * ***********   ********************************************

consensus_5170#0      TTGTTCCAATACTTGCTGCAATATGCACCGTGTTTGTTTCATTGCCGATACATTCATACT 300
consensus_5170#1      TTGTTCCAATACTTGCTGCAATATGCACCGTGTTTGTTTCATTGCCGATACATTCATACT 142
                      ************************************************************

consensus_5170#0      TGTGCCACTGTTGAACTTACAAGACCAATTGAGCAGAAATTTTCTGAAGCTATATTCCTG 360
consensus_5170#1      TGTGCCACTGTTGAACTTACAAGACCAATTGAGCAGAAATTTTCTGAAGCTATATTCCTG 202
                      ************************************************************

consensus_5170#0      TCAGTTCTGTAGTTTGTATTCAGGTAGCCAGGCCCATGGGCCACAACTCGAAACAGGTTT 420
consensus_5170#1      TCAGTTCTGTAGTTTGTATTCAGGTAGCCAGGCCCATGGGCCACAACTCGAAACAGGTTT 262
                      ************************************************************

consensus_5170#0      CGGCCCAATCGGCTTGTATATCTGATTCAGTAGCACTGTGGCAATTCACCAATCAGAACT 480
consensus_5170#1      CGGCCCAATCGGCTTGTATATCTGATTCAGTAGCACTGTGGCAATTCACCAATCAGAACT 322
                      ************************************************************

consensus_5170#0      CAGAAATTCAGAACTGAACAGTTTGTTTTCCAAAAAAAA 519
consensus_5170#1      CAGAAATTCAGAGCTAAAAAAAAAA-----AAAAAAAAA 356
                      ************ ** ** *           ********