cluster # 5174

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5174 cluster # 5174 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5174#0 length = 663 sequences # 2

consensus_5174#1 length = 577 sequences # 1

consensusID : consensus_5174#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 663
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAAACATGGGCATTCCACTCCAATTTCCAACTTGGCTTGGAATATACACGGCAAGCCCACTTAATCTTCACTTCGCATCTTCATGGTCGGGGAAGTTGAGTGGCTATGTCTAAAATTCGTATGTACAAGAATACTATCAAATCGCTGTACAACCACTGATTTTTTTTTTTCATATCCCACTATGGACTTTTCATTCAACGACTCCTACTGAGCTGATGGGTCATATATCAGTTATTTACAGAGCCTGATTACTTATCTCCTCGCAGATTTCTACTGGATGCTGATAACATGCTG-GGGAGGGGGGATCGGCCGGAAGCCCTTTCCTCCTCCAGGTTCTGAAACCGTTGCCTCGGGCACTGCCAGATGTTGCCTGTATCGATGAAGCAATGTGGTAACTGATACCAAGATGATGTATATTGGGATGACAATTCCAGCTGTTTTTATCATCACAAGAGGGAACAGGGCTATCGAAGAAACCTCAGGATCGCCCGGGATTAAGTGAGAGCGCAGAAGGGGAGCCCCCCGAGGGCCCTCCAGAGATTATTGCCACACACCCGGGAAATAAAACAACACCCTTTTGGCGGCTGGAATTCCTCGAGAGGCCAAAACCTGGTATCGCCCCGGCCCGGTTGTG]

[+] EMBL CA760435             [TTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAAACATGGGCATTCCACTCCAATTTCCAACTTGGCTTGGAATATACACGGCAAGCCCACTTAATCTTCACTTCGCATCTTCATGGTCGGGGAAGTTGAGTGGCTATGTCTAAAATTCGTATGTACAAGAATACTATCAAATCGCTGTACAACCACTGATTTTTTTTTTTCATATCCCACTATGGACTTTTCATTCAACGACTCCTACTGAGCTGATGGGTCATATATCAGTTATTTACAGAGCCTGATTACTTATCTCCTCGCAGATTTCTACTGGATGCTGATAACATGCTG GGGAGGGGGGATCGGCCGGAAGCCCTTTCCTCCTCCAGGTTCTGAAACCGTTGCCTCGGGCACTGCCAGATGTTGCCTGTATCGATGAAGCAATGTGGTAACTGATACCAAGATGATGTATATTGGGATGACAATTCCAGCTGTTTTTATCATCACAAGAGGGAACAGGGCTATCGAAGAAACCTCAGGATCGCCCGGGATTAAGTGAGAGCGCAGAAGGGGAGCCCCCCGAGGGCCCTCCAGAGATTATTGCCACACACCCGGGAAATAAAACAACACCCTTTTGGCGGCTGGAATTCCTCGAGAGGCCAAAACCTGGTATCGCCCCGGCCCGGTTGTG]
[+] EMBL CF337785             [ TTTTTTTATTCTTTGACATGAATGTAGGAAAACATGTGCATTCCACTCCAATTTCCAACTTGTCATGTAATATACACATCAAGCCCACTTAATCTTCACTTCGCATCTTCATGGTCGGTGAAGTTGAGTGGCTATGTCTAAAATTCGTATGTACAAGAATACTATCAAATCGCTGTACAACCACTGA  TTTTTTTTTCATATCCTACTATGGACTTTTCATTCAACGACTCCTACTGAGCTGATGGGTCATATATCAGTTATTTACAGAGCCTGATTACTTATCTCCTTGCAGATTTCTACTGGATGCTGATAACATGCTGTGGGAGGTGGCATCGGCCGCAAGCCCTCTCCTCCTCCAGGTTCTGAATCCGTTGCCTCGTGCACTGCCTGATGTTGCCTGTATCGATGAAGCAATGTGGTAACTGATACCAAGATGATGTATATTGGTATGACAATTCCAGCTGTTCTAATCATCAAAAGAGTGAACAGt                                                                                                                                                                           ]




>consensus_5174#0
TTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAAACATGGGCATTCCACTCCAATTTCCAAC
TTGGCTTGGAATATACACGGCAAGCCCACTTAATCTTCACTTCGCATCTTCATGGTCGGG
GAAGTTGAGTGGCTATGTCTAAAATTCGTATGTACAAGAATACTATCAAATCGCTGTACA
ACCACTGATTTTTTTTTTTCATATCCCACTATGGACTTTTCATTCAACGACTCCTACTGA
GCTGATGGGTCATATATCAGTTATTTACAGAGCCTGATTACTTATCTCCTCGCAGATTTC
TACTGGATGCTGATAACATGCTGGGGAGGGGGGATCGGCCGGAAGCCCTTTCCTCCTCCA
GGTTCTGAAACCGTTGCCTCGGGCACTGCCAGATGTTGCCTGTATCGATGAAGCAATGTG
GTAACTGATACCAAGATGATGTATATTGGGATGACAATTCCAGCTGTTTTTATCATCACA
AGAGGGAACAGGGCTATCGAAGAAACCTCAGGATCGCCCGGGATTAAGTGAGAGCGCAGA
AGGGGAGCCCCCCGAGGGCCCTCCAGAGATTATTGCCACACACCCGGGAAATAAAACAAC
ACCCTTTTGGCGGCTGGAATTCCTCGAGAGGCCAAAACCTGGTATCGCCCCGGCCCGGTT
GTG

consensusID : consensus_5174#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence

                              [TTTTTTAGGAAAACATGTGCATTCCACTCCAATTTCCAACTTGTCATGTAATATACACATCAAGCCCACTTAATCTTCACTTCGCATCTTCATGGTCGGTGAAGTTGAGTGGCTATGTCTAAAATTCGTATGTACAAGAATACTATCAAATCGCTGTACAACCACTGATTTTTTTTTCATATCCTACTATGGACTTTTCATTCAACGACTCCTACTGAGCTGATGGGTCATATATCAGTTATTTACAGAGCCTGATTACTTATCTCCTTGCAGATTTCTACTGGATGCTGATAACATGCCTGTGGAGGTGGCATCGGCCGCAAGCCCTCTCCTCCTCCAGGTTCTGAATCCGTTGCATCGTGCACTGCCTGAAATCTCATACAAACCCAAATTATGGATGCAACTGATTTTTTAAAGGGAGAAAACAGAATTATTTGAGGTTTTGACAGATGTTGCCTGTATCGATGAAGCAATGTGGTAACAGACCTGATGTTGCCTGTATCGATGAAGCAATGTGGTAACTGATACCAAGATGATGTATATTGGTATGACAATTCCAGCTGTTCTAATCATCAAA]

[+] EMBL CF310667             [TTTTTTAGGAAAACATGTGCATTCCACTCCAATTTCCAACTTGTCATGTAATATACACATCAAGCCCACTTAATCTTCACTTCGCATCTTCATGGTCGGTGAAGTTGAGTGGCTATGTCTAAAATTCGTATGTACAAGAATACTATCAAATCGCTGTACAACCACTGATTTTTTTTTCATATCCTACTATGGACTTTTCATTCAACGACTCCTACTGAGCTGATGGGTCATATATCAGTTATTTACAGAGCCTGATTACTTATCTCCTTGCAGATTTCTACTGGATGCTGATAACATGCCTGTGGAGGTGGCATCGGCCGCAAGCCCTCTCCTCCTCCAGGTTCTGAATCCGTTGCATCGTGCACTGCCTGAAATCTCATACAAACCCAAATTATGGATGCAACTGATTTTTTAAAGGGAGAAAACAGAATTATTTGAGGTTTTGACAGATGTTGCCTGTATCGATGAAGCAATGTGGTAACAGACCTGATGTTGCCTGTATCGATGAAGCAATGTGGTAACTGATACCAAGATGATGTATATTGGTATGACAATTCCAGCTGTTCTAATCATCAAA]




>consensus_5174#1
TTTTTTAGGAAAACATGTGCATTCCACTCCAATTTCCAACTTGTCATGTAATATACACAT
CAAGCCCACTTAATCTTCACTTCGCATCTTCATGGTCGGTGAAGTTGAGTGGCTATGTCT
AAAATTCGTATGTACAAGAATACTATCAAATCGCTGTACAACCACTGATTTTTTTTTCAT
ATCCTACTATGGACTTTTCATTCAACGACTCCTACTGAGCTGATGGGTCATATATCAGTT
ATTTACAGAGCCTGATTACTTATCTCCTTGCAGATTTCTACTGGATGCTGATAACATGCC
TGTGGAGGTGGCATCGGCCGCAAGCCCTCTCCTCCTCCAGGTTCTGAATCCGTTGCATCG
TGCACTGCCTGAAATCTCATACAAACCCAAATTATGGATGCAACTGATTTTTTAAAGGGA
GAAAACAGAATTATTTGAGGTTTTGACAGATGTTGCCTGTATCGATGAAGCAATGTGGTA
ACAGACCTGATGTTGCCTGTATCGATGAAGCAATGTGGTAACTGATACCAAGATGATGTA
TATTGGTATGACAATTCCAGCTGTTCTAATCATCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5174#0      TTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAAACATGGGCATTCCACTCCAATTTCCAAC 60
consensus_5174#1      --------------------TTTTTTAGGAAAACATGTGCATTCCACTCCAATTTCCAAC 40
                                          ***************** **********************

consensus_5174#0      TTGGCTTGGAATATACACGGCAAGCCCACTTAATCTTCACTTCGCATCTTCATGGTCGGG 120
consensus_5174#1      TTGTCATGTAATATACACATCAAGCCCACTTAATCTTCACTTCGCATCTTCATGGTCGGT 100
                      *** * ** *********  *************************************** 

consensus_5174#0      GAAGTTGAGTGGCTATGTCTAAAATTCGTATGTACAAGAATACTATCAAATCGCTGTACA 180
consensus_5174#1      GAAGTTGAGTGGCTATGTCTAAAATTCGTATGTACAAGAATACTATCAAATCGCTGTACA 160
                      ************************************************************

consensus_5174#0      ACCACTGATTTTTTTTTTTCATATCCCACTATGGACTTTTCATTCAACGACTCCTACTGA 240
consensus_5174#1      ACCACTGATTTTTTTTT--CATATCCTACTATGGACTTTTCATTCAACGACTCCTACTGA 218
                      *****************  ******* *********************************

consensus_5174#0      GCTGATGGGTCATATATCAGTTATTTACAGAGCCTGATTACTTATCTCCTCGCAGATTTC 300
consensus_5174#1      GCTGATGGGTCATATATCAGTTATTTACAGAGCCTGATTACTTATCTCCTTGCAGATTTC 278
                      ************************************************** *********

consensus_5174#0      TACTGGATGCTGATAACATGC-TGGGGAGGGGGGATCGGCCGGAAGCCCTTTCCTCCTCC 359
consensus_5174#1      TACTGGATGCTGATAACATGCCTGTGGAGGTGGCATCGGCCGCAAGCCCTCTCCTCCTCC 338
                      ********************* ** ***** ** ******** ******* *********

consensus_5174#0      AGGTTCTGAAACCGTTGCCTCGGGCACTGCCAGATGTTGCCTGTATCGATGAAGCAATGT 419
consensus_5174#1      AGGTTCTGAATCCGTTGCATCGTGCACTGCCTGAAATCTCATACAAACCCAAATTATGGA 398
                      ********** ******* *** ******** **  *  * *  *      **  *  * 

consensus_5174#0      GGTAACTGATACCAAGATGATGTATATTGGGATGAC----AATTCCAGCTGTTTTTATCA 475
consensus_5174#1      TGCAACTGATTTTTTAAAGGGAGAAAACAGAATTATTTGAGGTTTTGACAGATGTTGCCT 458
                       * *******      * *    * *   * ** *       **    * * * **  * 

consensus_5174#0      TCACAAGAGGGAACAGGGCTATCGAAGAAACCTCAGGATCGCCCGGGATTAAGTGAGAGC 535
consensus_5174#1      GTATC-GATGAAGCAATGTGGT--AACAGACCTGATG-TTGCCTGTATCGATGAAGCAAT 514
                        *   ** * * **  *   *  ** * **** * * * *** *     * *    *  

consensus_5174#0      GCAGAAGGGGAGCCCCCCGAGGGCCCTCCAGAGATTAT--TGCCACACACCCGGGAAATA 593
consensus_5174#1      GTGGTAACTGATACCAAGATGATGTATATTGGTATGACAATTCCAGCTGTTCTAATCATC 574
                      *  * *   **  **     *     *   *  ** *   * ***      *     ** 

consensus_5174#0      AAACAACACCCTTTTGGCGGCTGGAATTCCTCGAGAGGCCAAAACCTGGTATCGCCCCGG 653
consensus_5174#1      AAA--------------------------------------------------------- 577
                      ***                                                         

consensus_5174#0      CCCGGTTGTG 663
consensus_5174#1      ----------