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Oryza sativa
cluster # 5175 cluster # 5175       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5175#0 length = 1384 sequences # 3  

consensusID : consensus_5175#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1384
fasta sequence
                              [CCCCCATATTGCAGCCTCCTCCCGCTTCTTCTCCAGCTGCAGTCGTTGCACCTGCAGGATTAGAAGAAGTGGGAAGACGAGGATAGGAGCTTCTGCTGCTGGTCGTAGGTGCAGTAGTGATGATTCTGCTTGTTCAGAACCCTCTGAGCAGCAAAATGCAGATTTCTTTTCAGGTCCCATATCTTCTCTTTGTTATACAAGGAGGGACTTTGCTTCTGTTGCTCTGCTCCCTTTCATACTTCCTCATGTTCATATAGCGAGTGCGGCTGAGCCAATTGATGGTTCAATTATTCAAAACGGTGTGAGGAATGTTTTATCCAAGGTCAAGGCTGCTGGCATGCTTCGTTTGGCTTTCCATGATGCAGGGACTTTTGATATTGCTGATAAATCAGGTGGCATGAATGGATCTATAATTTATGAAGTTGATAGACCTGAAAATACTGGGCTAAATAAATCCATAAAGGTATTAGGAAAAGCGAAAGAAGTAATTGACCTTGTGCAGCAAGTATCATGGGCGGATTTGATTGCCGTGGCTGGTGCTGAGTCAGTTGCGCTATGTGGAGGGCCAGAAATTCCAGTAAGACTAGGTCGATTAGATTCCAGTACTGCTGATCCTGCTGGTAAACTTCCTGAAGAAACATTGGATGCCACTGCGCTGAAAACATTATTCAGCAAAAAGGGCTTTTCGACACAGGAGATGGTTGTGTTATCTGGAGCACACACAATTGGAGGTAAAGGATTCGGGA-ATCCAAATATTTTCGACAACTCCTATTTTAAAGTACTCCTTGAGAAGCCACAGCCATCTTCATCTGGCATGCCGGCAATGGTAGGACTGCGAACGGATTGGGCACTCACTGAAGATGATGAATGCTTAAGATGGATCAATTTATATGCACAGGACCAAGCTAAATTTTTTGCCGACTTCAAGGATGCATACATCAAGCTTGTAAATACTGGAGCCTCATGGAGATCAGCTTAATTTTACTCGCACACAGCTCTCTCTCGTGTAGGCTATTAGGCACGATTCAAACGTAGGAACCTCAGAGAATTTTTGTGGAAAACAAAGCAATGGAGGTCTGGATTTCTTAATATTTACTCCAAAGACAAGCTTTCACCGTAAATTTCTTACTGTTACGAAATCATAGTCATTAAATAGGAGTTTCGAACATGAATCCAACAAATATATTTTTGTATAGCAAAACCTATATATTATTTTATTACCAAGGGTCAAAGCATAGAACTAGACAATCAAAATCCTCCTTATATTTTTGAATGTAGGGGGCTAATAAATCATGCAGTTCTGTAGGATATATTTTCAACAAACATCAATAAGGAATGTAAGAATTGGAACTTTCATGTTAAAGGCAGCGTTCTTTTCTGAAAC]

[+] EMBL AK065893             [CCCCCATATTGCAGCCTCCTCCCGCTTCTTCTCCAGCTGCAGTCGTTGCACCTGCAGGATTAGAAGAAGTGGGAAGACGAGGATAGGAGCTTCTGCTGCTGGTCGTAGGTGCAGTAGTGATGATTCTGCTTGTTCAGAACCCTCTGAGCAGCAAAATGCAGATTTCTTTTCAGGTCCCATATCTTCTCTTTGTTATACAAGGAGGGACTTTGCTTCTGTTGCTCTGCTCCCTTTCATACTTCCTCATGTTCATATAGCGAGTGCGGCTGAGCCAATTGATGGTTCAATTATTCAAAACGGTGTGAGGAATGTTTTATCCAAGGTCAAGGCTGCTGGCATGCTTCGTTTGGCTTTCCATGATGCAGGGACTTTTGATATTGCTGATAAATCAGGTGGCATGAATGGATCTATAATTTATGAAGTTGATAGACCTGAAAATACTGGGCTAAATAAATCCATAAAGGTATTAGGAAAAGCGAAAGAAGTAATTGACCTTGTGCAGCAAGTATCATGGGCGGATTTGATTGCCGTGGCTGGTGCTGAGTCAGTTGCGCTATGTGGAGGGCCAGAAATTCCAGTAAGACTAGGTCGATTAGATTCCAGTACTGCTGATCCTGCTGGTAAACTTCCTGAAGAAACATTGGATGCCACTGCGCTGAAAACATTATTCAGCAAAAAGGGCTTTTCGACACAGGAGATGGTTGTGTTATCTGGAGCACACACAATTGGAGGTAAAGGATTCGGGA ATCCAAATATTTTCGACAACTCCTATTTTAAAGTACTCCTTGAGAAGCCACAGCCATCTTCATCTGGCATGCCGGCAATGGTAGGACTGCGAACGGATTGGGCACTCACTGAAGATGATGAATGCTTAAGATGGATCAATTTATATGCACAGGACCAAGCTAAATTTTTTACCGACTTCAAGGATGCATACATCAAGCTTGTAAATACTGGAGCCTCATGGAGATCAGCTTAATTTTACTCGCACACAGCTCTCTCTCGTGTAGGCTATTAGGCACGATTCAAACGTAGGAACCTCAGAGAATTTTTGTGGAAAACAAAGCAATGGAGGTCTGGATTTCTTAATATTTACTCCAAAGACAAGCTTTCACCGTAAATTTCTTACTGTTACGAAATCATAGTCATTAAATAGGAGTTTCGAACATGAATCCAACAAATATATTTTTGTATAGCAAAACCTATATATTATTTTATTACCAAGGGTCAAAGCATAGAACTAGACAATCAAAATCCTCCTTATATTTTTGAATGTAGGGGGCTAATAAATCATGCAGTTCTGTAGGATATATTTTCAACAAACATCAATAAGGAATGTAAGAATTGGAACTTTCATGTTAAAGGCAGCGTTCTTTTCTGAAAC]
[-] EMBL CB650896             [                                                                                                                                                                                                                                                                                                TATTCAAAACGGTGTGAGGAATGTTTTATCCAAGGTCAAGGCTGCTGGCATGCTTCGTTTGGCTTTCCATGATGCAGGGACTTTTGATATTGCTGATAAATCAGGTGGCATGAATGGATCTATAATTTATGAAGTTGATAGACCTGAAAATGCTGGGCTAAATAAATCCATAAAGGTATTAGGAAAAGCGAAAGAAGTAATTGTCCTTGTGCAGCAAGTATCATGGGCGGATTTGATTGCCGTGGCTGGTGCTGAGTCAGTTGCGCTATGTGGAGGGCCAGAAATTCCAGTAAGAGTAGGTCGATTAGATTCCAGTACTGTTGATCCTGCTGGTAAACTTCCTGAAGAAACATTGGATGCCACTGCGCTGAAAACATTATTCAGCAAAAAGGGCTTTTCGACACAGGAGATGGTTGTGTTATCTGGAGCACACACAATTGGAGGTAAAGGATTCGGGA ATCCAAATATTTTCGACAACTCCTATTTTAAAGTACTCCTTGAGAAGCCCCAGCCATCTTCATCTGGCATGCCGGCAATGGTAGGACTGCGAACGGATTGGGCACTCACTGAAGATGATGAATGCTTAAGATGGATCAATTTATATGCACAGGACCAAGCTAAATTTTTTGCCGACTTCAAGGATGCATCCATCAAGCTTGTAAATACTGGAGCCTCATGGAGATCAGCTTAATTTTACTCGCACACAGCTCTCTCTCGTGTAGGCTATTAGGCACGATTCAAACGTAGGACCCTCAGAGAATTTTTGTGGAAAACAAAGCAATGGAGGTCTGGATTTCTT                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BI812215             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCCTGAAGAAACATTGGAT CCACTGCGCTGAAAACATTATTCAGC AAAAGGGCTTTTCGACACAGGAGATGGTTGTGTTATCTGGAGCACACACAATTGGAGGTAAAGGATTCGGGATATCCCAATATGTTCGACAACTCCTATTTTAAAGTACTCCTTGAGAAGCCACAGCCATCTTCATCTGGCATGCC GCAATGGTAGGACTGCGAACGGATT GGCACTCACTGAAGATGATGAATGCTTAAGATGGATC ATTTATATGCACAGGACCAAGCTAATTTTTTTGCCGACTTCAAGGATGCATACATCAAGCTTGTAAATACTGGAGCCTCATGGAGATCAGCTTAATTTTACTCGCACACAGCTCTCTCTAATGTAGGCTATTAGGCACGATTCAAACGTAGGAACCTCAGAGAATTTTTGTGGAAAACCAAGCCATGGAGGTCTGGATTTCTTAATATTTACTCCCAAAAAAAaaa                                                                                                                                                                                                                                                                                  ]


>consensus_5175#0 CCCCCATATTGCAGCCTCCTCCCGCTTCTTCTCCAGCTGCAGTCGTTGCACCTGCAGGAT TAGAAGAAGTGGGAAGACGAGGATAGGAGCTTCTGCTGCTGGTCGTAGGTGCAGTAGTGA TGATTCTGCTTGTTCAGAACCCTCTGAGCAGCAAAATGCAGATTTCTTTTCAGGTCCCAT ATCTTCTCTTTGTTATACAAGGAGGGACTTTGCTTCTGTTGCTCTGCTCCCTTTCATACT TCCTCATGTTCATATAGCGAGTGCGGCTGAGCCAATTGATGGTTCAATTATTCAAAACGG TGTGAGGAATGTTTTATCCAAGGTCAAGGCTGCTGGCATGCTTCGTTTGGCTTTCCATGA TGCAGGGACTTTTGATATTGCTGATAAATCAGGTGGCATGAATGGATCTATAATTTATGA AGTTGATAGACCTGAAAATACTGGGCTAAATAAATCCATAAAGGTATTAGGAAAAGCGAA AGAAGTAATTGACCTTGTGCAGCAAGTATCATGGGCGGATTTGATTGCCGTGGCTGGTGC TGAGTCAGTTGCGCTATGTGGAGGGCCAGAAATTCCAGTAAGACTAGGTCGATTAGATTC CAGTACTGCTGATCCTGCTGGTAAACTTCCTGAAGAAACATTGGATGCCACTGCGCTGAA AACATTATTCAGCAAAAAGGGCTTTTCGACACAGGAGATGGTTGTGTTATCTGGAGCACA CACAATTGGAGGTAAAGGATTCGGGAATCCAAATATTTTCGACAACTCCTATTTTAAAGT ACTCCTTGAGAAGCCACAGCCATCTTCATCTGGCATGCCGGCAATGGTAGGACTGCGAAC GGATTGGGCACTCACTGAAGATGATGAATGCTTAAGATGGATCAATTTATATGCACAGGA CCAAGCTAAATTTTTTGCCGACTTCAAGGATGCATACATCAAGCTTGTAAATACTGGAGC CTCATGGAGATCAGCTTAATTTTACTCGCACACAGCTCTCTCTCGTGTAGGCTATTAGGC ACGATTCAAACGTAGGAACCTCAGAGAATTTTTGTGGAAAACAAAGCAATGGAGGTCTGG ATTTCTTAATATTTACTCCAAAGACAAGCTTTCACCGTAAATTTCTTACTGTTACGAAAT CATAGTCATTAAATAGGAGTTTCGAACATGAATCCAACAAATATATTTTTGTATAGCAAA ACCTATATATTATTTTATTACCAAGGGTCAAAGCATAGAACTAGACAATCAAAATCCTCC TTATATTTTTGAATGTAGGGGGCTAATAAATCATGCAGTTCTGTAGGATATATTTTCAAC AAACATCAATAAGGAATGTAAGAATTGGAACTTTCATGTTAAAGGCAGCGTTCTTTTCTG AAAC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)