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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5177#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1624 fasta sequence
[GCAGCGCCGCCTCGCCGCGCGCCACCGCCGCCCGCCTGCCCCCAGGTAGCGTTACATGATCGCCCGCTCGAGACACGCTGCCTCGCTCGCAGCCGCAGCATGTGGGGGTACCTCCTCCGCCGCTCGCTCGTACGCCGGCCTCGACCTGCTCCTGCAGGAGAACTTCTCGGCCCCGCGCCGCGTCCTCCAGCTCCACGCCCTCCTCCTCACCTCCGGCGCGCTCTCCCTCCCGCACCCCGACCCGGCCGCCACCGCCGCCTTCCCCTACAACTGCCTCATCCACGCCCACCTCCGCCTCCGCGGCTCCGCTTCTCCTCCATGGGGCCCCCTCCGGATCTTCTCCGCCATGCTCGCCCGCGGCGTCCGCCCCAACCGCCACACCTTCCCCTCCCTCCTCAAGTCTAGCGCCAGCTTCGACGCGGCCACCCCGACCCTCCACGCGCAGTGCCTCCGCCGCGGCCTAGACGAGGACCGCTTCGTCGCCTGCTCGCTCCTCAGCGCCTACGGCCGCGACGGCCATCTTGTGCGCGACGCGCGTAAGGTGTTCGACGATATGGCTAGTCCGGATTTGGCTACCTGTAATGCCATGCTTGACGTGCTGTGTCTCTCCGGAGACATGTATGGTGCCCGCTGCTTATTTGATCGTATGGTGGTGAGGGATGTTGTATCGTGGACGACGATTATCTCTGGGTTAACGAGGATTGGGTGTCACTGGGATGCTGTTGAAATGTTCCGGGCATTTCTGCTGCAGAATAAGGGACGGCTTTCTGAGGCCACACTGGTAAGCGTTCTTTCAGCTTGTGCTAATCTGGATGCTGTGGAGGGGCTTGCGGTTGGAATGGCTGTTCATGGGCATGTTGTTCGCCATGAGGTTCAGTTCACTGCGTTCTTGGGCACAGCACTCATCGACATGTATGGTAAGTATGGGAAGCTTAGCTGTTGTGGCCATATCTTTCATTTGGTAAGAGACAAGGAGGTTTGTACGTGGAATGCACTGTTGTCTGCATTGGCTAATCATGGGAAGGAGGCTGAAGCACTGGTTAAGTTTGAGATGATGAGGAGTGAAGGGTTCTTGCCAAATCATATTACATTCGTTGCTGTAATGACAGCCTGTGCTCGCGCAGGATTGGTGGAGACTGGCTTAGACTTCTTCGAAGAGTTGTTTACTGAATATAAGGTCATTCCAATGATGGTGCATTATGGGTGTGTGGTAGATCTTTTAGGCCGTGCTGGTCGTTTTCTGGAGGCAATTCAGATTATAGAGAGGATGCCATTTATGGCTGATGATTCTGTGTGGGGTGCACTTCTTGGGGCTTGCAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAATAGTTCTTGGTGGTCAGCAACCTGGACGGTATGTGACTGTTAGGAACATGTATTTAGAAGAAGGGAACTGGTATGCTGCCACTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGGTATGAGCAGTGTTGTGCTTAATTGAGTTAATTCTATCACATGAAGTAGTAGTTATATTATTCATCGGATTAGATGTTTGTAAGAACAGAATAGGTATGATGTTACTTCTAGATGTTGGAATTAATTT]
[+] EMBL AK073049 [GCAGCGCCGCCTCGCCGCGCGCCACCGCCGCCCGCCTGCCCCCAGGTAGCGTTACATGATCGCCCGCTCGAGACACGCTGCCTCGCTCGCAGCCGCAGCATGTGGGGGTACCTCCTCCGCCGCTCGCTCGTACGCCGGCCTCGACCTGCTCCTGCAGGAGAACTTCTCGGCCCCGCGCCGCGTCCTCCAGCTCCACGCCCTCCTCCTCACCTCCGGCGCGCTCTCCCTCCCGCACCCCGACCCGGCCGCCACCGCCGCCTTCCCCTACAACTGCCTCATCCACGCCCACCTCCGCCTCCGCGGCTCCGCTTCTCCTCCATGGGGCCCCCTCCGGATCTTCTCCGCCATGCTCGCCCGCGGCGTCCGCCCCAACCGCCACACCTTCCCCTCCCTCCTCAAGTCTAGCGCCAGCTTCGACGCGGCCACCCCGACCCTCCACGCGCAGTGCCTCCGCCGCGGCCTAGACGAGGACCGCTTCGTCGCCTGCTCGCTCCTCAGCGCCTACGGCCGCGACGGCCATCTTGTGCGCGACGCGCGTAAGGTGTTCGACGATATGGCTAGTCCGGATTTGGCTACCTGTAATGCCATGCTTGACGTGCTGTGTCTCTCCGGAGACATGTATGGTGCCCGCTGCTTATTTGATCGTATGGTGGTGAGGGATGTTGTATCGTGGACGACGATTATCTCTGGGTTAACGAGGATTGGGTGTCACTGGGATGCTGTTGAAATGTTCCGGGCATTTCTGCTGCAGAATAAGGGACGGCTTTCTGAGGCCACACTGGTAAGCGTTCTTTCAGCTTGTGCTAATCTGGATGCTGTGGAGGGGCTTGCGGTTGGAATGGCTGTTCATGGGCATGTTGTTCGCCATGAGGTTCAGTTCACTGCGTTCTTGGGCACAGCACTCATCGACATGTATGGTAAGTATGGGAAGCTTAGCTGTTGTGGCCATATCTTTCATTTGGTAAGAGACAAGGAGGTTTGTACGTGGAATGCACTGTTGTCTGCATTGGCTAATCATGGGAAGGAGGCTGAAGCACTGGTTAAGTTTGAGATGATGAGGAGTGAAGGGTTCTTGCCAAATCATATTACATTCGTTGCTGTAATGACAGCCTGTGCTCGCGCAGGATTGGTGGAGACTGGCTTAGACTTCTTCGAAGAGTTGTTTACTGAATATAAGGTCATTCCAATGATGGTGCATTATGGGTGTGTGGTAGATCTTTTAGGCCGTGCTGGTCGTTTTCTGGAGGCAATTCAGATTATAGAGAGGATGCCATTTATGGCTGATGATTCTGTGTGGGGTGCACTTCTTGGGGCTTGCAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAATAGTTCTTGGTGGTCAGCAACCTGGACGGTATGTGACTGTTAGGAACATGTATTTAGAAGAAGGGAACTGGTATGCTGCCACTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGGTATGAGCAGTGTTGTGCTTAATTGAGTTAATTCTATCACATGAAGTAGTAGTTATATTATTCATCGGATTAGATGTTTGTAAGAACAGAATAGGTATGATGTTACTTCTAGATGTTGGAATTAATTT]
[+] EMBL AK102630 [GCAGCGCCGCCTCGCCGCGCGCCACCGCCGCCCGCCTGCCCCCAGGTAGCGTTACATGATCGCCCGCTCGAGACACGCTGCCTCGCTCGCAGCCGCAGCATGTGGGGGTACCTCCTCCGCCGCTCGCTCGTACGCCGGCCTCGACCTGCTCCTGCAGGAGAACTTCTCGGCCCCGCGCCGCGTCCTCCAGCTCCACGCCCTCCTCCTCACCTCCGGCGCGCTCTCCCTCCCGCACCCCGACCCGGCCGCCACCGCCGCCTTCCCCTACAACTGCCTCATCCACGCCCACCTCCGCCTCCGCGGCTCCGCTTCTCCTCCATGGGGCCCCCTCCGGATCTTCTCCGCCATGCTCGCCCGCGGCGTCCGCCCCAACCGCCACACCTTCCCCTCCCTCCTCAAGTCTAGCGCCAGCTTCGACGCGGCCACCCCGACCCTCCACGCGCAGTGCCTCCGCCGCGGCCTAGACGAGGACCGCTTCGTCGCCTGCTCGCTCCTCAGCGCCTACGGCCGCGACGGCCATCTTGTGCGCGACGCGCGTAAGGTGTTCGACGATATGGCTAGTCCGGATTTGGCTACCTGTAATGCCATGCTTGACGTGCTGTGTCTCTCCGGAGACATGTATGGTGCCCGCTGCTTATTTGATCGTATGGTGGTGAGGGATGTTGTATCGTGGACGACGATTATCTCTGGGTTAACGAGGATTGGGTGTCACTGGGATGCTGTTGAAATGTTCCGGGCATTTCTGCTGCAGAATAAGGGACGGCTTTCTGAGGCCACACTGGTAAGCGTTCTTTCAGCTTGTGCTAATCTGGATGCTGTGGAGGGGCTTGCGGTTGGAATGGCTGTTCATGGGCATGTTGTTCGCCATGAGGTTCAGTTCACTGCGTTCTTGGGCACAGCACTCATCGACATGTATGGTAAGTATGGGAAGCTTAGCTGTTGTAGCCATATCTTTCATTTGGTAAGAGACAAGGAGGTTTGTACGTGGAATGCACTGTTGTCTGCATTGGCTAATCATGGGAAGGAGGCTGAAGCACTGGTTAAGTTTGAGATGATGAGGAGTGAAGGGTTCTTGCCAAATCATATTACATTCGTTGCTGTAATGACAGCCTGTGCTCGCGCAGGATTGGTGGAGACTGGCTTAGACTTCTTCGAAGAGTTGTTTACTGAATATAAGGTCATTCCAATGATGGTGCATTATGGGTGTGTGGTAGATCTTTTAGGCCGTGCTGGTCGTTTTCTGGAGGCAATTCAGATTATAGAGAGGATGCCATTTATGGCTGATGATTCTGTGTGGGGTGCACTTCTTGGGGCTTGCAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAATAGTTCTTGGTGGTCAGCAACCTGGACGGTATGTGACTGTTAGGAACATGTATTTAGAAGAAGGGAACTGGTATGCTGCCACTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGGTATGAGCAGTGTTGTGCTTAATTGAGTTAATTCTATCACATGAAGTAGTAGTTATATTATTCATCGGATTAGATGTTTGTAAGAACAGAATAGGTATGATGTTACTTCTAGATGTTGGAATTAATTT]
consensusID : consensus_5177#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[AATCGTGAAACCTGAGACCGCGGTAATGGCACCGTGGCGTTGCGCAGGATTTGTGGAGAATGGATTACTCTTCTTCGAAGAGTTTGGGTACGGATATAGGGTCGGTCCAAGTTATGGTCCATTATAGGGTGTGTGGTAGATCCTTTAGACCGTGCTGGTCGTTTTCGGGAGGCAATTCAGATCATAGAGAGGATGCCATTTATGGCTGATGATTCTGTGTGGGATGCACTTCTTGGGGCTTGCAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAATAGTTCTTGGTGGTCAGCAACCTGGACGGTATGTGCCTGTTAGGAACATGTATTTAGAAGAAGGGAACTGGTATGCTGCCCCTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGGTATGAGCAGTGTTGTGCTTGATTGAGTTAATTCTATCACATGAAGTAGTAGTTATATTATTCATCGGATTAGATGTTTGCAAGAACAGAATAGGTATGATGTTACTTCTAGATGTTGGAATTAATTTGTCATTTGGGACAAAACCTGTAACGCTCTGATTTTCATTTGGGATTAAAAATCATTAAATAATGTATTTTCCAGAAATTAAATAAAAGTTAAATCAATTTAAAAAAAAAAAAAA]
[-] EMBL CA759981 [AATCGTGAAACCTGAGACCGCGGTAATGGCACCGTGGCGTTGCGCAGGATTTGTGGAGAATGGATTACTCTTCTTCGAAGAGTTTGGGTACGGATATAGGGTCGGTCCAAGTTATGGTCCATTATAGGGTGTGTGGTAGATCCTTTAGACCGTGCTGGTCGTTTTCGGGAGGCAATTCAGATCATAGAGAGGATGCCATTTATGGCTGATGATTCTGTGTGGGATGCACTTCTTGGGGCTTGCAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAATAGTTCTTGGTGGTCAGCAACCTGGACGGTATGTGCCTGTTAGGAACATGTATTTAGAAGAAGGGAACTGGTATGCTGCCCCTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGGTATGAGCAGTGTTGTGCTTGATTGAGTTAATTCTATCACATGAAGTAGTAGTTATATTATTCATCGGATTAGATGTTTGCAAGAACAGAATAGGTATGATGTTACTTCTAGATGTTGGAATTAATTTGTCATTTGGGACAAAACCTGTAACGCTCTGATTTTCATTTGGGATTAAAAATCATTAAATAATGTATTTTCCAGAAATTAAATAAAAGTTAAATCAATTTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5177#0 GCAGCGCCGCCTCGCCGCGCGCCACCGCCGCCCGCCTGCCCCCAGGTAGCGTTACATGAT 60
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 CGCCCGCTCGAGACACGCTGCCTCGCTCGCAGCCGCAGCATGTGGGGGTACCTCCTCCGC 120
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 CGCTCGCTCGTACGCCGGCCTCGACCTGCTCCTGCAGGAGAACTTCTCGGCCCCGCGCCG 180
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 CGTCCTCCAGCTCCACGCCCTCCTCCTCACCTCCGGCGCGCTCTCCCTCCCGCACCCCGA 240
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 CCCGGCCGCCACCGCCGCCTTCCCCTACAACTGCCTCATCCACGCCCACCTCCGCCTCCG 300
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 CGGCTCCGCTTCTCCTCCATGGGGCCCCCTCCGGATCTTCTCCGCCATGCTCGCCCGCGG 360
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 CGTCCGCCCCAACCGCCACACCTTCCCCTCCCTCCTCAAGTCTAGCGCCAGCTTCGACGC 420
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 GGCCACCCCGACCCTCCACGCGCAGTGCCTCCGCCGCGGCCTAGACGAGGACCGCTTCGT 480
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 CGCCTGCTCGCTCCTCAGCGCCTACGGCCGCGACGGCCATCTTGTGCGCGACGCGCGTAA 540
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 GGTGTTCGACGATATGGCTAGTCCGGATTTGGCTACCTGTAATGCCATGCTTGACGTGCT 600
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 GTGTCTCTCCGGAGACATGTATGGTGCCCGCTGCTTATTTGATCGTATGGTGGTGAGGGA 660
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 TGTTGTATCGTGGACGACGATTATCTCTGGGTTAACGAGGATTGGGTGTCACTGGGATGC 720
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 TGTTGAAATGTTCCGGGCATTTCTGCTGCAGAATAAGGGACGGCTTTCTGAGGCCACACT 780
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 GGTAAGCGTTCTTTCAGCTTGTGCTAATCTGGATGCTGTGGAGGGGCTTGCGGTTGGAAT 840
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 GGCTGTTCATGGGCATGTTGTTCGCCATGAGGTTCAGTTCACTGCGTTCTTGGGCACAGC 900
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 ACTCATCGACATGTATGGTAAGTATGGGAAGCTTAGCTGTTGTGGCCATATCTTTCATTT 960
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 GGTAAGAGACAAGGAGGTTTGTACGTGGAATGCACTGTTGTCTGCATTGGCTAATCATGG 1020
consensus_5177#1 ------------------------------------------------------------
consensus_5177#0 GAAGGAGGCTGAAGCACTGGTTAAGTTTGAGATGATGAGGAGTGAAGGGTTCTTGCCAAA 1080
consensus_5177#1 ----------------------------------------------------------AA 2
**
consensus_5177#0 TCATATTACATTCG-TTGCTGTAATGACAGCCTGTGCTCGCGCAGGATTGGTGGAGACTG 1139
consensus_5177#1 TCGTGAAACCTGAGACCGCGGTAATGGCACCGTGGCGTTGCGCAGGATTTGTGGAGAATG 62
** * ** * * ** ****** ** * ** * ********** ******* **
consensus_5177#0 GCTTAGACTTCTTCGAAGAGTTGTTTACTGAATATAAGGTCATTCCAA-TGATGGTGCAT 1198
consensus_5177#1 GATTACTCTTCTTCGAAGAGTTTGGGTACGGATATAGGGTCGGTCCAAGTTATGGTCCAT 122
* *** *************** * ***** **** ***** * ***** ***
consensus_5177#0 TAT-GGGTGTGTGGTAGATCTTTTAGGCCGTGCTGGTCGTTTTCTGGAGGCAATTCAGAT 1257
consensus_5177#1 TATAGGGTGTGTGGTAGATCCTTTAGACCGTGCTGGTCGTTTTCGGGAGGCAATTCAGAT 182
*** **************** ***** ***************** ***************
consensus_5177#0 TATAGAGAGGATGCCATTTATGGCTGATGATTCTGTGTGGGGTGCACTTCTTGGGGCTTG 1317
consensus_5177#1 CATAGAGAGGATGCCATTTATGGCTGATGATTCTGTGTGGGATGCACTTCTTGGGGCTTG 242
**************************************** ******************
consensus_5177#0 CAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAATAGTTCTTGG 1377
consensus_5177#1 CAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAATAGTTCTTGG 302
************************************************************
consensus_5177#0 TGGTCAGCAACCTGGACGGTATGTGACTGTTAGGAACATGTATTTAGAAGAAGGGAACTG 1437
consensus_5177#1 TGGTCAGCAACCTGGACGGTATGTGCCTGTTAGGAACATGTATTTAGAAGAAGGGAACTG 362
************************* **********************************
consensus_5177#0 GTATGCTGCCACTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGG 1497
consensus_5177#1 GTATGCTGCCCCTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGG 422
********** *************************************************
consensus_5177#0 TATGAGCAGTGTTGTGCTTAATTGAGTTAATTCTATCACATGAAGTAGTAGTTATATTAT 1557
consensus_5177#1 TATGAGCAGTGTTGTGCTTGATTGAGTTAATTCTATCACATGAAGTAGTAGTTATATTAT 482
******************* ****************************************
consensus_5177#0 TCATCGGATTAGATGTTTGTAAGAACAGAATAGGTATGATGTTACTTCTAGATGTTGGAA 1617
consensus_5177#1 TCATCGGATTAGATGTTTGCAAGAACAGAATAGGTATGATGTTACTTCTAGATGTTGGAA 542
******************* ****************************************
consensus_5177#0 TTAATTT----------------------------------------------------- 1624
consensus_5177#1 TTAATTTGTCATTTGGGACAAAACCTGTAACGCTCTGATTTTCATTTGGGATTAAAAATC 602
*******
consensus_5177#0 ------------------------------------------------------------
consensus_5177#1 ATTAAATAATGTATTTTCCAGAAATTAAATAAAAGTTAAATCAATTTAAAAAAAAAAAAA 662
consensus_5177#0 -
consensus_5177#1 A 663
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||