These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_520#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence [TACAACTATTGTTATGTTACAGTATATAGTTTGGTATTTTAGTGTGTCACGGTTTGTCAGTAGGAATATCAAGAACAAGGAAGAAATTCCATGAGTTAACTAAATTAAGGAGGAGTATCCATTCCATGAGTTAACTAATACTAATACTATTGGCTCAAGCATCAGCTGATGAGGCCTGAGGTCATGAGGAGAGGAGCTGAGGCCTCACCCTCCTCCTGATGCCTTGCTCTCTTGCCTCCTGCTCTCGCTTCTTCTCTCCTCTATTTTCTTGGCCTCGCCTCGCCGGCTGCTCAGTGCTCAATCAAGAAGAAGAAGAAGAAGCTCTCTTTCGATGATCTCCCTGAAGTAGTTAACGCTTACTCTGCTCTCTATATATCTGGTTGATCCAGCCAGCCAACTTCATCTTTGCTTGGGTTGGTGAGAATTTAGAATGTGAGGTCATGNTTGAGATTGAATGAGGACAGTTCCTGACCGGCCNGGAAGCGTTAGGAGTAATAAATTTCCGCCGTGTGTCGTGCAACAGTTCCATCCCACTGCTGATTAACTCGACTCATAACATAATATTTGCTCTCCTTCTCCTGTCATCATCTTTTGAGAACGTTGCCCCATGGAAAATTTAAGGGACTCTAACTCTCCCAATAGGGGGGGAACATTCCGGTCTGTTCCTTGGTGGGCTCGGCCGTTTGACACCCAAATAATGGCCTTTCTTCTTTTGAGGCGAGGGGTAATGTCTCTTCCCTCAATAAATGTTCTATGGTTTGGGGTCATCCTCATTTTATAAATTGGAGTAATAGATTATGGTTTACACATACCATTCAATC] [+] EMBL AW155251 [TACAACTATTGTTATGTTACAGTATATAGTTTGGTATTTTAGTGTGTCACGGTTTGTCAGTAGGAATATCAAGAACAAGGAAGAAATTCCATGAGTTAACTAAATTAAGGAGGAGTATCCATTCCATGAGTTAACTAATACTAATACTATTGGCTCAAGCATCAGCTGATGAGGCCTGAGGTCATGAGGAGAGGAGCTGAGGCCTCACCCTCCTCCTGATGCCTTGCTCTCTTGCCTCCTGCTCTCGCTTCTTCTCTCCTCTATTTTCTTGGCCTCGCCTCGCCGGCTGCTCAGTGCTCAATCAAGAAGAAGAAGAAGAAGCTCTCTTTCGATGATCTCCCTGAAGTAGTTAACGCTTACTCTGCTCTCTATATATCTGGTTGATCCAGCCAGCCAACTTCATCTTTGCTTGGGTTGGTGAGAATTTAGAATGTGAGGTCATGNTTGAGATTGAATGAGGACAGTTCCTGACCGGCCNGGAAGCGTTAGGAGTAATAAATTTCCGCCGTGTGTCGTGCAACAGTTCCATCCCACTGCTGATTAACTCGACTCATAACATAATATTTGCTCTCCTTCTCCTGTCATCATCTTTTGAGAACGTTGCCCCATGGAAAATTTAAGGGACTCTAACTCTCCCAATAGGGGGGGAACATTCCGGTCTGTTCCTTGGTGGGCTCGGCCGTTTGACACCCAAATAATGGCCTTTCTTCTTTTGAGGCGAGGGGTAATGTCTCTTCCCTCAATAAATGTTCTATGGTTTGGGGTCATCCTCATTTTATAAATTGGAGTAATAGATTATGGTTTACACATACCATTCAATC] consensusID : consensus_520#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [GGCCTGAGGTCATGAGGAGAGGAGCTGAGGCCTCACCCTCCTCCTGATGCCTTGCTCTCTTGCCTCCTGCTCTCGCTTCTTCTCTCCTCTATTTTCTTGGCCTCGCCTCGCCGGCTGCTCAGTGCTCAATCAAGAAGAAGAAGAAGAAGCTCTCTTTCGATGATCTCCCTGAGTTAGTTAACGCTTACTCTGCTCTCTATATATCTGTTTGATCCAGCCAGCCACCTCCATCTTTGCTTGGTTGGTTGAGATTTGAGATGTTGAGGTCCATGTTTGAGATTGAATTGAGGACAGGTTCCTGAACCGGCAGGGAGGCTGAGGAGTTAATTAATTTCCGTCTGTCTGTCGGTGCAGCCAGTTCCCATACCACCTGCTGCATCAACTCCGTACTCCATAAACATATATATTTTGCTTCTTCTCTTCTCCCTGCTCCATCGATTCTTCTTGTAAGAGCTGCTTGCTACCTAGTTGGATCAGTAGTAGAGGAGGCAGCTAGCTTAGCTAGCTACCAATTAATGGCGGGTGATCAGCTGCTCCGGCGGCTCCTGTTCCTCCTGTGNGTGGTGGCGCTGGCGGTGCCGGGGCTGGCGGCCAGGNCGGCGAACGTCAGC] [+] EMBL CA755948 [GGCCTGAGGTCATGAGGAGAGGAGCTGAGGCCTCACCCTCCTCCTGATGCCTTGCTCTCTTGCCTCCTGCTCTCGCTTCTTCTCTCCTCTATTTTCTTGGCCTCGCCTCGCCGGCTGCTCAGTGCTCAATCAAGAAGAAGAAGAAGAAGCTCTCTTTCGATGATCTCCCTGAGTTAGTTAACGCTTACTCTGCTCTCTATATATCTGTTTGATCCAGCCAGCCACCTCCATCTTTGCTTGGTTGGTTGAGATTTGAGATGTTGAGGTCCATGTTTGAGATTGAATTGAGGACAGGTTCCTGAACCGGCAGGGAGGCTGAGGAGTTAATTAATTTCCGTCTGTCTGTCGGTGCAGCCAGTTCCCATACCACCTGCTGCATCAACTCCGTACTCCATAAACATATATATTTTGCTTCTTCTCTTCTCCCTGCTCCATCGATTCTTCTTGTAAGAGCTGCTTGCTACCTAGTTGGATCAGTAGTAGAGGAGGCAGCTAGCTTAGCTAGCTACCAATTAATGGCGGGTGATCAGCTGCTCCGGCGGCTCCTGTTCCTCCTGTGNGTGGTGGCGCTGGCGGTGCCGGGGCTGGCGGCCAGGNCGGCGAACGTCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_520#0 TACAACTATTGTTATGTTACAGTATATAGTTTGGTATTTTAGTGTGTCACGGTTTGTCAG 60 consensus_520#1 ------------------------------------------------------------ consensus_520#0 TAGGAATATCAAGAACAAGGAAGAAATTCCATGAGTTAACTAAATTAAGGAGGAGTATCC 120 consensus_520#1 ------------------------------------------------------------ consensus_520#0 ATTCCATGAGTTAACTAATACTAATACTATTGGCTCAAGCATCAGCTGATGAGGCCTGAG 180 consensus_520#1 ----------------------------------------------------GGCCTGAG 8 ******** consensus_520#0 GTCATGAGGAGAGGAGCTGAGGCCTCACCCTCCTCCTGATGCCTTGCTCTCTTGCCTCCT 240 consensus_520#1 GTCATGAGGAGAGGAGCTGAGGCCTCACCCTCCTCCTGATGCCTTGCTCTCTTGCCTCCT 68 ************************************************************ consensus_520#0 GCTCTCGCTTCTTCTCTCCTCTATTTTCTTGGCCTCGCCTCGCCGGCTGCTCAGTGCTCA 300 consensus_520#1 GCTCTCGCTTCTTCTCTCCTCTATTTTCTTGGCCTCGCCTCGCCGGCTGCTCAGTGCTCA 128 ************************************************************ consensus_520#0 ATCAAGAAGAAGAAGAAGAAGCTCTCTTTCGATGATCTCCCTGAAGTAGTTAACGCTTAC 360 consensus_520#1 ATCAAGAAGAAGAAGAAGAAGCTCTCTTTCGATGATCTCCCTGAGTTAGTTAACGCTTAC 188 ******************************************** ************** consensus_520#0 TCTGCTCTCTATATATCTGGTTGATCCAGCCAGCCAACTTCATCTTTGCTTGGGTTGGTG 420 consensus_520#1 TCTGCTCTCTATATATCTGTTTGATCCAGCCAGCCACCTCCATCTTTGCTTGGTTGGTTG 248 ******************* **************** ** ************* * * ** consensus_520#0 AGAATTTAGAATGTGAGGTC-ATGNTTGAGATTGAAT-GAGGACAG-TTCCTGACCGGCC 477 consensus_520#1 AGATTTGAGATGTTGAGGTCCATGTTTGAGATTGAATTGAGGACAGGTTCCTGAACCGGC 308 *** ** *** ******* *** ************ ******** ******* * * * consensus_520#0 NGGAAGCGTTAGGAGT-AATAAATTTCCGCC-GTGTGTCG-TGCAAC-AGTTCC-ATCCC 532 consensus_520#1 AGGGAGGCTGAGGAGTTAATTAATTTCCGTCTGTCTGTCGGTGCAGCCAGTTCCCATACC 368 ** ** * ****** *** ******** * ** ***** **** * ****** ** ** consensus_520#0 AC-TGCTG-ATTAACTCGACTCATAACATA-ATATTTGCTCTCCTTCTCCTGTCATCATC 589 consensus_520#1 ACCTGCTGCATCAACTCCGTACTCCATAAACATATATATTTTGCTTCTTCTCTTCTCCCT 428 ** ***** ** ***** * * * * **** * * * ***** ** * ** consensus_520#0 TTTTGAGAACGTTGCCCCATGGAAAATTTAAGGGACTCTAACTCTCCCAATAGGGGGGGA 649 consensus_520#1 GCTCCATCGATTCTTCTTGTAAGAGCTGCTTGCTAC-CTAGTTGGATCAGTAGTAGAGGA 487 * * * * * * * * ** *** * ** *** * *** consensus_520#0 ACATTCCGGTCTGTTCCTTGGTGGGCT--CGGCCGTTTGACACCCAAAT-AATGGCCTTT 706 consensus_520#1 GGCAGCTAGCTTAGCTAGCTACCAATTAATGGCGGGTGATCAGCTGCTCCGGCGGCTCCT 547 * * * * *** * * ** * *** * consensus_520#0 CTTCTTTTGAGGCGAGG-GGTAATGTCTCTTCCCTCAATAAATGTTCTATGGTTTGGGGT 765 consensus_520#1 GTTCCTCCTGTGNGTGGTGGCGCTGGCGGTGCCGGGGCTGGCGGCCAGGNCGGCGAACGT 607 *** * * * ** ** ** * * ** * * * ** consensus_520#0 CATCCTCATTTTATAAATTGGAGTAATAGATTATGGTTTACACATACCATTCAATC 821 consensus_520#1 CAGC---------------------------------------------------- 611 ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||