cluster # 5200

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Oryza sativa
cluster # 5200 cluster # 5200 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5200#0 length = 669 sequences # 1

consensus_5200#1 length = 468 sequences # 1
consensus_5200#2 length = 250 sequences # 1

consensusID : consensus_5200#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [GCAGAGCCCCATGCGACTACTCCCTCCACCGAGCTCGGCACCTCCGCCCGGCGCCGAGCTCGCCTCCTACCTCCACCGAGCGCCGGCGCCGCCTGCTGCCTACACCCTGCCAGAGCGGACTCCGCCTACGCCCTTCACCGAGGTCGGGAACTCCACGCTGCGACTCCAAGCGTAGGATCTCCACCGTGCCAACTGCGCTTCCTGCCCTATCCGTTCCCCCGGGCCAGGACCTGTTGATCGACTGTGCTGGGCGCCGCCTGTGGGAGATACATATAAGCCTGACGGATGCATCGTAGTAGATGAACGAGCAAACGCCGGGTGACCAAGAAAGGAGTAAAAGATGACCCAACCCTGTGTAGAACGGGTGTGAAAAGTTAATCCCCTTGACAGCATCCGAGGGGGCGGTGCTTGCGCAGAGATAAAGTGTAATGGACGTGGATCCGCATGGTCGAAATCATGATCGGAAGATTTGCGAGGGGGGGAGGAGATAAAGACGTTGTGAGGTATGCCCTCACAGCTCGAGCGGGATCACCCTTCTTAAGCGAAGGAAGCGGAGACCACACAGTGCACAGGCGAAGAGATTTCATGTTTGAGAATGAAGGTATTAAGTAAGTCGAACGCGCACGTATCCCCCCCGCCAGGATGGAGGTATAATTTCACTAGTAAAGA]

[+] EMBL CA758498             [GCAGAGCCCCATGCGACTACTCCCTCCACCGAGCTCGGCACCTCCGCCCGGCGCCGAGCTCGCCTCCTACCTCCACCGAGCGCCGGCGCCGCCTGCTGCCTACACCCTGCCAGAGCGGACTCCGCCTACGCCCTTCACCGAGGTCGGGAACTCCACGCTGCGACTCCAAGCGTAGGATCTCCACCGTGCCAACTGCGCTTCCTGCCCTATCCGTTCCCCCGGGCCAGGACCTGTTGATCGACTGTGCTGGGCGCCGCCTGTGGGAGATACATATAAGCCTGACGGATGCATCGTAGTAGATGAACGAGCAAACGCCGGGTGACCAAGAAAGGAGTAAAAGATGACCCAACCCTGTGTAGAACGGGTGTGAAAAGTTAATCCCCTTGACAGCATCCGAGGGGGCGGTGCTTGCGCAGAGATAAAGTGTAATGGACGTGGATCCGCATGGTCGAAATCATGATCGGAAGATTTGCGAGGGGGGGAGGAGATAAAGACGTTGTGAGGTATGCCCTCACAGCTCGAGCGGGATCACCCTTCTTAAGCGAAGGAAGCGGAGACCACACAGTGCACAGGCGAAGAGATTTCATGTTTGAGAATGAAGGTATTAAGTAAGTCGAACGCGCACGTATCCCCCCCGCCAGGATGGAGGTATAATTTCACTAGTAAAGA]




>consensus_5200#0
GCAGAGCCCCATGCGACTACTCCCTCCACCGAGCTCGGCACCTCCGCCCGGCGCCGAGCT
CGCCTCCTACCTCCACCGAGCGCCGGCGCCGCCTGCTGCCTACACCCTGCCAGAGCGGAC
TCCGCCTACGCCCTTCACCGAGGTCGGGAACTCCACGCTGCGACTCCAAGCGTAGGATCT
CCACCGTGCCAACTGCGCTTCCTGCCCTATCCGTTCCCCCGGGCCAGGACCTGTTGATCG
ACTGTGCTGGGCGCCGCCTGTGGGAGATACATATAAGCCTGACGGATGCATCGTAGTAGA
TGAACGAGCAAACGCCGGGTGACCAAGAAAGGAGTAAAAGATGACCCAACCCTGTGTAGA
ACGGGTGTGAAAAGTTAATCCCCTTGACAGCATCCGAGGGGGCGGTGCTTGCGCAGAGAT
AAAGTGTAATGGACGTGGATCCGCATGGTCGAAATCATGATCGGAAGATTTGCGAGGGGG
GGAGGAGATAAAGACGTTGTGAGGTATGCCCTCACAGCTCGAGCGGGATCACCCTTCTTA
AGCGAAGGAAGCGGAGACCACACAGTGCACAGGCGAAGAGATTTCATGTTTGAGAATGAA
GGTATTAAGTAAGTCGAACGCGCACGTATCCCCCCCGCCAGGATGGAGGTATAATTTCAC
TAGTAAAGA

consensusID : consensus_5200#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence

                              [GCAGCGCCCCATCCGCCTCCTCCCTCCACCGAGCTCGCCACCTCCGCCCGGCGCCGAGCTCGCCTCCTCCCTCCACCGAGCGCCGGCGCCGCCTGCTGCCTCCACCGTGCCGGCGCCCCCTCCGCCTCCTCCCTTCACCGAGCTCGCCGCCTCCACCCTCCGCCTCGGCGCCTCCAGCCTCCACCGCGCCAGCGCCGCTTCCTGCCCTCACGGCTCCACCGCGCCGGCGCCGCCTCCTGCACCGCGCCGGGCGCCGCCTCCTCCCTCCACATCTAGCCGGTCGGCTACATCCCGGAGGCTGAAGTTGAAGTGGCTGTGTGCGCCAGTTGTGTTCGATTTGCCGATTTCCTTTCTAGATCGTGTTTGATTTGCTTCTTTTTTTTTTTGTCTAAGTAGTGCTCGATTTGCTGGTGAGTGGTGACATCAATTTGCAGTGTGTTGTGTATGGCCTAATTGCTTAATTCATTT]

[+] EMBL AK062945             [GCAGCGCCCCATCCGCCTCCTCCCTCCACCGAGCTCGCCACCTCCGCCCGGCGCCGAGCTCGCCTCCTCCCTCCACCGAGCGCCGGCGCCGCCTGCTGCCTCCACCGTGCCGGCGCCCCCTCCGCCTCCTCCCTTCACCGAGCTCGCCGCCTCCACCCTCCGCCTCGGCGCCTCCAGCCTCCACCGCGCCAGCGCCGCTTCCTGCCCTCACGGCTCCACCGCGCCGGCGCCGCCTCCTGCACCGCGCCGGGCGCCGCCTCCTCCCTCCACATCTAGCCGGTCGGCTACATCCCGGAGGCTGAAGTTGAAGTGGCTGTGTGCGCCAGTTGTGTTCGATTTGCCGATTTCCTTTCTAGATCGTGTTTGATTTGCTTCTTTTTTTTTTTGTCTAAGTAGTGCTCGATTTGCTGGTGAGTGGTGACATCAATTTGCAGTGTGTTGTGTATGGCCTAATTGCTTAATTCATTT]




>consensus_5200#1
GCAGCGCCCCATCCGCCTCCTCCCTCCACCGAGCTCGCCACCTCCGCCCGGCGCCGAGCT
CGCCTCCTCCCTCCACCGAGCGCCGGCGCCGCCTGCTGCCTCCACCGTGCCGGCGCCCCC
TCCGCCTCCTCCCTTCACCGAGCTCGCCGCCTCCACCCTCCGCCTCGGCGCCTCCAGCCT
CCACCGCGCCAGCGCCGCTTCCTGCCCTCACGGCTCCACCGCGCCGGCGCCGCCTCCTGC
ACCGCGCCGGGCGCCGCCTCCTCCCTCCACATCTAGCCGGTCGGCTACATCCCGGAGGCT
GAAGTTGAAGTGGCTGTGTGCGCCAGTTGTGTTCGATTTGCCGATTTCCTTTCTAGATCG
TGTTTGATTTGCTTCTTTTTTTTTTTGTCTAAGTAGTGCTCGATTTGCTGGTGAGTGGTG
ACATCAATTTGCAGTGTGTTGTGTATGGCCTAATTGCTTAATTCATTT

consensusID : consensus_5200#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 250
fasta sequence

                              [CGGCGCCGCCTCCTGCACCGCGCCGGGCGCCGCCTCCTCCCTCCACAGTCTAGCCGGTCGGCTACAGTCCCGGAGGTCTGAAGGTTGAAGGTGGCTGTGGTGCGCCCAGGTTGGTGGTTTCGACTTTGGCCGACTTTTCCTTTTCTAAGACTCGTGGTTTGAGTTTGCCTTCTTTTTTTTTTTGTCTAAGGTAGTGTCTCGACTTTGCTGGGTGAGTGGTGACAGTCAAGTTTGCAAGTGTGTTGAGCGG]

[+] EMBL AU225311             [CGGCGCCGCCTCCTGCACCGCGCCGGGCGCCGCCTCCTCCCTCCACAGTCTAGCCGGTCGGCTACAGTCCCGGAGGTCTGAAGGTTGAAGGTGGCTGTGGTGCGCCCAGGTTGGTGGTTTCGACTTTGGCCGACTTTTCCTTTTCTAAGACTCGTGGTTTGAGTTTGCCTTCTTTTTTTTTTTGTCTAAGGTAGTGTCTCGACTTTGCTGGGTGAGTGGTGACAGTCAAGTTTGCAAGTGTGTTGAGCGG]




>consensus_5200#2
CGGCGCCGCCTCCTGCACCGCGCCGGGCGCCGCCTCCTCCCTCCACAGTCTAGCCGGTCG
GCTACAGTCCCGGAGGTCTGAAGGTTGAAGGTGGCTGTGGTGCGCCCAGGTTGGTGGTTT
CGACTTTGGCCGACTTTTCCTTTTCTAAGACTCGTGGTTTGAGTTTGCCTTCTTTTTTTT
TTTGTCTAAGGTAGTGTCTCGACTTTGCTGGGTGAGTGGTGACAGTCAAGTTTGCAAGTG
TGTTGAGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5200#1      GCAGCGCCCCATCCGCCTCCTCCCTCCACCGAGCTCGCCACCTCCGCCCGGCGCCGAGCT 60
consensus_5200#2      ------------------------------------------------------------
consensus_5200#0      ------------------------------------------------------------
                                                                                  

consensus_5200#1      CGCCTCCTCCCTCCACCGAGCGCCGGCGCCGCCTGCTGCCTCCACCGTGCCGGCGCCCCC 120
consensus_5200#2      ------------------------------------------------------------
consensus_5200#0      ------------------------------------------------------------
                                                                                  

consensus_5200#1      TCCGCCTCCTCCCTTCACCGAGCTCGCCGCCTCCACCCTCCGCCTCGGCGCCTCCAGCCT 180
consensus_5200#2      ------------------------------------------------------------
consensus_5200#0      ------------------------------------------------------------
                                                                                  

consensus_5200#1      CCACCGCGCCAGCGCCGCTTCCTGCCCTCACGGCTCCACCGCGCCGGCGCCGCCTCCTGC 240
consensus_5200#2      --------------------------------------------CGGCGCCGCCTCCTGC 16
consensus_5200#0      ---------------GCAGAGCCCCATGCGACTACTCCCTCCACCGAGCTCGGCACCTCC 45
                                                                  **    ** * *** *

consensus_5200#1      ACC--GCGCCGGGCGCCGCCTCCTCCCTCCACA-TCTAGCCG-GTCGGCTACA-TCCCGG 295
consensus_5200#2      ACC--GCGCCGGGCGCCGCCTCCTCCCTCCACAGTCTAGCCG-GTCGGCTACAGTCCCGG 73
consensus_5200#0      GCCCGGCGCCGAGC-TCGCCTCCTACCTCCACCGAGCGCCGGCGCCGCCTGCTGCCTACA 104
                       **  ****** **  ******** *******       * * * ** ** *   *    

consensus_5200#1      AGG-CTGAAG-TTGAAG-TGGCTGTG---TGCGCC--AGTTG-TG--TTCGATTT--G-- 340
consensus_5200#2      AGGTCTGAAGGTTGAAGGTGGCTGTGG--TGCGCCCAGGTTGGTGGTTTCGACTTTGG-- 129
consensus_5200#0      CCCTGCCAGAGCGGACTCCGCCTACGCCCTTCACCGAGGTCGGGAACTCCACGCTGCGAC 164
                             *     **    * **  *   * * **   ** *     * *    *  *  

consensus_5200#1      -CCGATTT---CCTTTCTAGA--TCGTG-TTTGA-TT-TGC-TTCTTTTTTTTTTTGTCT 390
consensus_5200#2      -CCGACTTTTCCTTTTCTAAGACTCGTGGTTTGAGTT-TGCCTTCTTTTTTTTTTTGTCT 187
consensus_5200#0      TCCAAGCGTAGGATCTCCACCGTGCCAACTGCGCTTCCTGCCCTATCCGTTCCCCCGGGC 224
                       ** *        * ** *     *    *  *  *  ***  * *   **     *   

consensus_5200#1      AAG-TAGTG-C--TCGA-TTTGCTGG-TGAGTGGTGACA-TCAA-TTTGCA-GTGTGTTG 441
consensus_5200#2      AAGGTAGTGTC--TCGACTTTGCTGGGTGAGTGGTGACAGTCAAGTTTGCAAGTGTGTTG 245
consensus_5200#0      CAGGACCTGTTGATCGACTGTGCTGGGCGCCGCCTGTGGGAGATACATATAAGCCTGACG 284
                       **    **    **** * ******  *     **      *    *  * *  **  *

consensus_5200#1      TGTATGGCCTAATTGCTTAATTCATTT--------------------------------- 468
consensus_5200#2      AGCGG------------------------------------------------------- 250
consensus_5200#0      GATGCATCGTAGTAGATGAACGAGCAAACGCCGGGTGACCAAGAAAGGAGTAAAAGATGA 344
                                                                                  

consensus_5200#1      ------------------------------------------------------------
consensus_5200#2      ------------------------------------------------------------
consensus_5200#0      CCCAACCCTGTGTAGAACGGGTGTGAAAAGTTAATCCCCTTGACAGCATCCGAGGGGGCG 404
                                                                                  

consensus_5200#1      ------------------------------------------------------------
consensus_5200#2      ------------------------------------------------------------
consensus_5200#0      GTGCTTGCGCAGAGATAAAGTGTAATGGACGTGGATCCGCATGGTCGAAATCATGATCGG 464
                                                                                  

consensus_5200#1      ------------------------------------------------------------
consensus_5200#2      ------------------------------------------------------------
consensus_5200#0      AAGATTTGCGAGGGGGGGAGGAGATAAAGACGTTGTGAGGTATGCCCTCACAGCTCGAGC 524
                                                                                  

consensus_5200#1      ------------------------------------------------------------
consensus_5200#2      ------------------------------------------------------------
consensus_5200#0      GGGATCACCCTTCTTAAGCGAAGGAAGCGGAGACCACACAGTGCACAGGCGAAGAGATTT 584
                                                                                  

consensus_5200#1      ------------------------------------------------------------
consensus_5200#2      ------------------------------------------------------------
consensus_5200#0      CATGTTTGAGAATGAAGGTATTAAGTAAGTCGAACGCGCACGTATCCCCCCCGCCAGGAT 644
                                                                                  

consensus_5200#1      -------------------------
consensus_5200#2      -------------------------
consensus_5200#0      GGAGGTATAATTTCACTAGTAAAGA 669