|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 985 fasta sequence
[CCAAAACCCCCTTCCCCAAGCATCGCCGGCTCGCCGCCATCGCCGCCATGGCACGGCGGCTGCTCCGCCTCCGCGCCCACGCCGCCGGCTTGTCCCAGCGCCTCGCCCCCCGCCTCCTCCCCTCGCGCCCGTACATCTCCGACATGCGCCGCTCCGCCTTCTCCGACCGCCTCCTCCGCTCCCTCCGCTCCGAAATCTCCTCCCGCCGCGCGCCCTCGCCCCCGCCCTCCGCGGCGCCCTTCGCCGTCGACGACCGCCCGGGCGAGCAGTGGATCCGGCTGCGCCGCGCGTTCGGTGGTGATGATGATGATGAGAAGGAGGAGGTCAGGGTGGACGCCACCATGGTGGACGGCGCCACGGCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAGCTCAGGATGCACATCAGCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCGCTCACCTTCGAGTGCTCGGCGTGGCCCGATGAAATGGAGGTGGAGAGGGTCTACCCCGTCCGCCGCGGCGGGCCGGCGGCGGCGCAGCAGTACATGGGCCGCCATTTCAGTGAGTTGGATGACGAGATGCAAAGCACGGTACATGATTACTTGGAGCATCGAGGGGTGAACGATGAGCTTGCCGCATTCCTGCACTCATACATGGAAAACAAGGAGCAGACAGAACTGGTCCGGTGGTTTAAGAATGTGGAGTGCTTCATAAAAAAGTAGGCGATATCTTCTAGACACTTATGAGACAACATTAGTTGATCTTGCTTTGCAACAATTACAACCAGTGATCATTTTGGCACCAAATGTTCCCAATGCCACAAGTATTTGTTGTTATTATTGTTGTGCTAGATACACGAAGGTTGTAGTTGTACACTCCCAGTTCAGGACGAATTGGTTCACTAGTTTATCAAATGGTTTATACTCTACTGTGCTTCTCATCTTGAATATGGTATACT]
[+] EMBL AK110628 [CCAAAACCCCCTTCCCCAAGCATCGCCGGCTCGCCGCCATCGCCGCCATGGCACGGCGGCTGCTCCGCCTCCGCGCCCACGCCGCCGGCTTGTCCCAGCGCCTCGCCCCCCGCCTCCTCCCCTCGCGCCCGTACATCTCCGACATGCGCCGCTCCGCCTTCTCCGACCGCCTCCTCCGCTCCCTCCGCTCCGAAATCTCCTCCCGCCGCGCGCCCTCGCCCCCGCCCTCCGCGGCGCCCTTCGCCGTCGACGACCGCCCGGGCGAGCAGTGGATCCGGCTGCGCCGCGCGTTCGGTGGTGATGATGATGATGAGAAGGAGGAGGTCAGGGTGGACGCCACCATGGTGGACGGCGCCACGGCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAGCTCAGGATGCACATCAGCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCGCTCACCTTCGAGTGCTCGGCGTGGCCCGATGAAATGGAGGTGGAGAGGGTCTACCCCGTCCGCCGCGGCGGGCCGGCGGCGGCGCAGCAGTACATGGGCCGCCATTTCAGTGAGTTGGATGACGAGATGCAAAGCACGGTACATGATTACTTGGAGCATCGAGGGGTGAACGATGAGCTTGCCGCATTCCTGCACTCATACATGGAAAACAAGGAGCAGACAGAACTGGTCCGGTGGTTTAAGAATGTGGAGTGCTTCATAAAAAAGTAGGCGATATCTTCTAGACACTTATGAGACAACATTAGTTGATCTTGCTTTGCAACAATTACAACCAGTGATCATTTTGGCACCAAATGTTCCCAATGCCACAAGTATTTGTTGTTATTATTGTTGTGCTAGATACACGAAGGTTGTAGTTGTACACTCCCAGTTCAGGACGAATTGGTTCACTAGTTTATCAAATGGTTTATACTCTACTGTGCTTCTCATCTTGAATATGGTATACT]
consensusID : consensus_5202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 856 fasta sequence
[GAGGTCAGGGTGGACGCCACCATGGTGGACGGCGCCACGGCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAGCTCAGGATGCACATCAGCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCGCTCACCTTCGAGTGCTCGGCGTGGCCCGATGAGATGGAGGTGGAGAGGGCCTACCCCGTCCTGTCTGGCGGGCCTGCGGCGTGGCTCACTGACATGGGCCTTCAACTTCTCAGGACTGGATGTACCGGTGCTGATCACAGTTGATTATGATTTGTCACTTCGCAGGGTTAGCCAGGAGCTTGGCGCATTTACTATCTCCTACCTGAACGACATTGTGCATGACTAATCTGCCCGATGTACTGTAGTAAGCGATGCTTACTACCACTTTAAGTGACTCGTTTACACACTTATGACACAACACTCCGCCATCTTCCTTCGCTAATCTACGCCGACTGCATATTCTGCGCCGCACTATTCGCAATGCAAGCCGACTTCGTCTCTCTACTTGCCCAAGCCAACTCCGACGCCGTCGACCTACACACTGACGCCATCGCCGTCGTACCACAAGCCGACGCCGTCCTACACCCCCGGCCCGGCGCCGCCCTACTATTTTGGGGGCGACGATTTTAGGAGCCGTTTCAGCCGAAGGTGGTTACCACGCCGTCCAGGTTCCGTATTTAGTTGTCCGCATGGTTGCTATGGGGTAGTTGTCCCCCGTATCCGGCCGCCGTCTGTTCTTGCCGTGCCGCTCGGCGCTTCGCNCGTCCGCCACCTTCGTTGTAGGCTCGTATCCTCGCCTTCCCCGCTCATTTTTTAT]
[+] EMBL CA758216 [GAGGTCAGGGTGGACGCCACCATGGTGGACGGCGCCACGGCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAGCTCAGGATGCACATCAGCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCGCTCACCTTCGAGTGCTCGGCGTGGCCCGATGAGATGGAGGTGGAGAGGGCCTACCCCGTCCTGTCTGGCGGGCCTGCGGCGTGGCTCACTGACATGGGCCTTCAACTTCTCAGGACTGGATGTACCGGTGCTGATCACAGTTGATTATGATTTGTCACTTCGCAGGGTTAGCCAGGAGCTTGGCGCATTTACTATCTCCTACCTGAACGACATTGTGCATGACTAATCTGCCCGATGTACTGTAGTAAGCGATGCTTACTACCACTTTAAGTGACTCGTTTACACACTTATGACACAACACTCCGCCATCTTCCTTCGCTAATCTACGCCGACTGCATATTCTGCGCCGCACTATTCGCAATGCAAGCCGACTTCGTCTCTCTACTTGCCCAAGCCAACTCCGACGCCGTCGACCTACACACTGACGCCATCGCCGTCGTACCACAAGCCGACGCCGTCCTACACCCCCGGCCCGGCGCCGCCCTACTATTTTGGGGGCGACGATTTTAGGAGCCGTTTCAGCCGAAGGTGGTTACCACGCCGTCCAGGTTCCGTATTTAGTTGTCCGCATGGTTGCTATGGGGTAGTTGTCCCCCGTATCCGGCCGCCGTCTGTTCTTGCCGTGCCGCTCGGCGCTTCGCNCGTCCGCCACCTTCGTTGTAGGCTCGTATCCTCGCCTTCCCCGCTCATTTTTTAT]
consensusID : consensus_5202#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence
[GAGGTCATGGTGGACGCCACCATGGAGGACGGCGCCACGAGCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAGCTCAGGATGCACATCACCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCGCTCACCTTCCAGTGCTCGGCGTGGCCCGATGAGATGGAGGTGGAGAGGGTCTACCCCGTCCGCCGCGGCGGGCCGGCGGCGGCGCACCAGTACATGGGCCGCCAGTTCAGTGAGTTGGATGACGAGATGCAAAGCACGGTACATGATTACTTGGAGCATCTAGGGGTGAACGATGAGCTTGCCGCATTCCTGCACTCATACATGGAAAACAAGGAGCAGACAGATCTGGTCCGGTGGTTTAAGAATGTGGAGTGCTTCCTAAAAAAGTACGCGATATCTTGTATACACTTATGAGACATCATTAGTTGATCTTGCTTTGCAACTATTACAACCAGTGATCATTCTGGTACCAAATTTTCCCAATGCCACAAGTATTTGTTGCTATTATTGCTGCGCTAGATCACGAAGGTTGTAGTTGTACACTCCCAGTTCTGGATTAAAAAAATG]
[+] EMBL CA758211 [GAGGTCATGGTGGACGCCACCATGGAGGACGGCGCCACGAGCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAGCTCAGGATGCACATCACCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCGCTCACCTTCCAGTGCTCGGCGTGGCCCGATGAGATGGAGGTGGAGAGGGTCTACCCCGTCCGCCGCGGCGGGCCGGCGGCGGCGCACCAGTACATGGGCCGCCAGTTCAGTGAGTTGGATGACGAGATGCAAAGCACGGTACATGATTACTTGGAGCATCTAGGGGTGAACGATGAGCTTGCCGCATTCCTGCACTCATACATGGAAAACAAGGAGCAGACAGATCTGGTCCGGTGGTTTAAGAATGTGGAGTGCTTCCTAAAAAAGTACGCGATATCTTGTATACACTTATGAGACATCATTAGTTGATCTTGCTTTGCAACTATTACAACCAGTGATCATTCTGGTACCAAATTTTCCCAATGCCACAAGTATTTGTTGCTATTATTGCTGCGCTAGATCACGAAGGTTGTAGTTGTACACTCCCAGTTCTGGATTAAAAAAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5202#0 CCAAAACCCCCTTCCCCAAGCATCGCCGGCTCGCCGCCATCGCCGCCATGGCACGGCGGC 60
consensus_5202#2 ------------------------------------------------------------
consensus_5202#1 ------------------------------------------------------------
consensus_5202#0 TGCTCCGCCTCCGCGCCCACGCCGCCGGCTTGTCCCAGCGCCTCGCCCCCCGCCTCCTCC 120
consensus_5202#2 ------------------------------------------------------------
consensus_5202#1 ------------------------------------------------------------
consensus_5202#0 CCTCGCGCCCGTACATCTCCGACATGCGCCGCTCCGCCTTCTCCGACCGCCTCCTCCGCT 180
consensus_5202#2 ------------------------------------------------------------
consensus_5202#1 ------------------------------------------------------------
consensus_5202#0 CCCTCCGCTCCGAAATCTCCTCCCGCCGCGCGCCCTCGCCCCCGCCCTCCGCGGCGCCCT 240
consensus_5202#2 ------------------------------------------------------------
consensus_5202#1 ------------------------------------------------------------
consensus_5202#0 TCGCCGTCGACGACCGCCCGGGCGAGCAGTGGATCCGGCTGCGCCGCGCGTTCGGTGGTG 300
consensus_5202#2 ------------------------------------------------------------
consensus_5202#1 ------------------------------------------------------------
consensus_5202#0 ATGATGATGATGAGAAGGAGGAGGTCAGGGTGGACGCCACCATGGTGGACGGCGCCACG- 359
consensus_5202#2 --------------------GAGGTCATGGTGGACGCCACCATGGAGGACGGCGCCACGA 40
consensus_5202#1 --------------------GAGGTCAGGGTGGACGCCACCATGGTGGACGGCGCCACG- 39
******* ***************** *************
consensus_5202#0 GCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAG 419
consensus_5202#2 GCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAG 100
consensus_5202#1 GCGCCCACACGCTCCGGGGAGGTCGCGGGTGCGGGGCCCGACGACGCCGCCGGCCCGCAG 99
************************************************************
consensus_5202#0 CTCAGGATGCACATCAGCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCG 479
consensus_5202#2 CTCAGGATGCACATCACCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCG 160
consensus_5202#1 CTCAGGATGCACATCAGCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCG 159
**************** *******************************************
consensus_5202#0 CTCACCTTCGAGTGCTCGGCGTGGCCCGATGAAATGGAGGTGGAGAGGGTCTACCCCGTC 539
consensus_5202#2 CTCACCTTCCAGTGCTCGGCGTGGCCCGATGAGATGGAGGTGGAGAGGGTCTACCCCGTC 220
consensus_5202#1 CTCACCTTCGAGTGCTCGGCGTGGCCCGATGAGATGGAGGTGGAGAGGGCCTACCCCGTC 219
********* ********************** **************** **********
consensus_5202#0 CGCCGCGGCGGGCCGGCGGCGGCGCAGCAGTACATGGGCCGCCA-TTTCAGTGAGTTGGA 598
consensus_5202#2 CGCCGCGGCGGGCCGGCGGCGGCGCACCAGTACATGGGCCGCCA-GTTCAGTGAGTTGGA 279
consensus_5202#1 CTGTCTGGCGGGCCTGCGGCGTGGCTCACTGACATGGGCCTTCAACTTCTCAGGACTGGA 279
* ******** ****** ** ********* ** *** * ****
consensus_5202#0 TGACGAGATGCAAAGCACGGTACATGATTACTTGGAGCATCGAGGGGTGAACGATGAGCT 658
consensus_5202#2 TGACGAGATGCAAAGCACGGTACATGATTACTTGGAGCATCTAGGGGTGAACGATGAGCT 339
consensus_5202#1 TGTACCGGTGCTGATCACAGTTGATTATGATTTGTCACTTCGCAGGGTTAGCCAGGAGCT 339
** * *** * *** ** ** ** * *** * ** **** * * * *****
consensus_5202#0 TGCCGCATTCCTGCACTCATACATGGAAAACAAGGAGCAGACAGAACTGGTCCGGTGGTT 718
consensus_5202#2 TGCCGCATTCCTGCACTCATACATGGAAAACAAGGAGCAGACAGATCTGGTCCGGTGGTT 399
consensus_5202#1 TGGCGCATTTACTATCTCCTACCTGAACGACATTGTGCATGACTAATCTGCCCGATG-TA 398
** ****** *** *** ** * *** * *** * * *** ** *
consensus_5202#0 TAAGAATGTGGAGTGCTTCATAAAAAAGTAGGCGATATCTTCTAGACACTTATGAGACAA 778
consensus_5202#2 TAAGAATGTGGAGTGCTTCCTAAAAAAGTACGCGATATCTTGTATACACTTATGAGACAT 459
consensus_5202#1 CTGTAGTAAGCGATGCTTACTACCACTTTAAGTGAC-TCGTTTACACACTTATGACACAA 457
* * * ***** ** * ** * ** ** * ** ********** ***
consensus_5202#0 CATTAGTTGATCTTGCTTTGCAACAATTACAACCAGTGATCATTTTGGCACCAAATGTTC 838
consensus_5202#2 CATTAGTTGATCTTGCTTTGCAACTATTACAACCAGTGATCATTCTGGTACCAAATTTTC 519
consensus_5202#1 CACTCCGCCATCTTCCTTCGCTA-ATCTACGCCGACTGCATATTCTGCGCCGCACTATTC 516
** * ***** *** ** * *** * * ** *** ** * * * ***
consensus_5202#0 CCAATGCCACAAGTATTTGTTGTTATTATTGTT-GTGCTAGATACACGAAGGTTGTAGTT 897
consensus_5202#2 CCAATGCCACAAGTATTTGTTGCTATTATTGCT-GCGCTAGAT-CACGAAGGTTGTAGTT 577
consensus_5202#1 GCAATGCAAGCCGACTTCGTCTCTCTACTTGCCCAAGCCAACT---CCGACGCCGTCGAC 573
****** * * ** ** * * *** ** * * * * * ** *
consensus_5202#0 GTACACTCCCAGTTCAGGACGAATTGGTTCACTAGTTTATCAAATGGTTTATACTCTACT 957
consensus_5202#2 GTACACTCCCAGTTCTGGATTAAAAAAATG------------------------------ 607
consensus_5202#1 CTACACACTGACGCCATCGCCG-TCGTACCACAAGCCGACGCCGTCCTACACCCCCGGCC 632
***** * * *
consensus_5202#0 --GTGCTTCTC----ATCTTGAATATGGTATACT-------------------------- 985
consensus_5202#2 ------------------------------------------------------------
consensus_5202#1 CGGCGCCGCCCTACTATTTTGGGGGCGACGATTTTAGGAGCCGTTTCAGCCGAAGGTGGT 692
consensus_5202#0 ------------------------------------------------------------
consensus_5202#2 ------------------------------------------------------------
consensus_5202#1 TACCACGCCGTCCAGGTTCCGTATTTAGTTGTCCGCATGGTTGCTATGGGGTAGTTGTCC 752
consensus_5202#0 ------------------------------------------------------------
consensus_5202#2 ------------------------------------------------------------
consensus_5202#1 CCCGTATCCGGCCGCCGTCTGTTCTTGCCGTGCCGCTCGGCGCTTCGCNCGTCCGCCACC 812
consensus_5202#0 --------------------------------------------
consensus_5202#2 --------------------------------------------
consensus_5202#1 TTCGTTGTAGGCTCGTATCCTCGCCTTCCCCGCTCATTTTTTAT 856
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||