cluster # 5203

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Oryza sativa
cluster # 5203 cluster # 5203 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5203#0 length = 749 sequences # 2

consensus_5203#1 length = 173 sequences # 1

consensusID : consensus_5203#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 749
fasta sequence

                              [AAGGGGGATGAGGATCTCATACCCAAAGTTGCAGATGCCGGCATCCGTGCCCTGCTAGATCGATTAGGCGGTGTAGGCCCTTCATCGAGAACATCTTACGATCCTTTCCTTGATCCCAGAATGAGGGAATCCATAAATTTTTCCATTCAAAGTGATGTATACAGTTTTGGTGTTTTCCTTGTGGAGTTGCTCAGTGGCAAGAGGGCTCTGTCTGATCAAAACATCATTCGATGGGTGCAGAACTTCCAACAATCAAGTGATATCTCTGCAATTGCAGATAACAGAATGGCCAGTGCCTATACCTCAGAAGGCATGAGAGAATTTCTGCGGTTGACATCGTGGTGCGTGAACCCGACGAGCGAGCATCGCCCATCGATGAACTTGGTGGAGGCGGAGATAAACCGAATTCGCGAGCAAGAGATGAGGATGACCACAATCATGCCAGAAAGCACACCAACTGTGACTCTAGGTAGTCAGCTCTTCACAACATCAGGTTGAAGAAGAACTAGCTAGTTTCCTCTCATCATCAGAGTTATAGACTAGCAATTCCCTTTCCATTTATTATTTCTCTCTCTTTTCTTTGGTCTTCATAGTGATTCAGCTGTAACTCAAGTGTACAAAAAAGGAACAGCTGTGAGGTTCCCTTTATTNCTTTTCCTGTACAAGAAAAGAATGATATTTCCNTTTCTTTTACATATTGGATAATATTGGAGGCTGATGCCAAAGTTATTCCATTATACTACTAAAAA]

[+] EMBL CB096832             [AAGGGGGATGAGGATCTCATACCCAAAGTTGCAGATGCCGGCATCCGTGCCCTGCTAGATCGATTAGGCGGTGTAGGCCCTTCATCGAGAACATCTTACGATCCTTTCCTTGATCCCAGAATGAGGGAATCCATAAATTTTTCCATTCAAAGTGATGTATACAGTTTTGGTGTTTTCCTTGTGGAGTTGCTCAGTGGCAAGAGGGCTCTGTCTGATCAAAACATCATTCGATGGGTGCAGAACTTCCAACAATCAAGTGATATCTCTGCAATTGCAGATAACAGAATGGCCAGTGCCTATACCTCAGAAGGCATGAGAGAATTTCTGCGGTTGACATCGTGGTGCGTGAACCCGACGAGCGAGCATCGCCCATCGATGAACTTGGTGGAGGCGGAGATAAACCGAATTCGCGAGCAAGAGATGAGGATGACCACAATCATGCCAGAAAGCACACCAACTGTGACTCTAGGTAGTCAGCTCTTCACAACATCAGGTTGAAGAAGAACTAGCTAGTTTCCTCTCATCATCAGAGTTATAGACTAGCAATTCCCTTTCCATTTATTATTTCTCTCTCTTTTCTTTGGTCTTCATAGTGATTCAGCTGTAACTCAAGTGTACAAAAAAGGAACAGCTGTGAGGTTCCCTTTATTNCTTTTCCTGTACAAGAAAAGAATGATATTTCCNTTTCTTTTACATATTGGATAATATTGGAGGCTGATGCCAAAG                       ]
[+] EMBL BI801277             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGGTAGTCAGCTCTTCACAACATCAGGTTGAAGAAGAACTAGCTAGTTTCCTCTCATCATCAGAGTTATAGACTAGCAATTCCCTTTCCATTTATTATTTCTCTCTCTTTTCTTTGGTCTTCATAGTGATTCAGCTGTAACTCAAGTGTAC AAAAAGGAACAGCTGTGAGGTTCCCTTTATTCCTTTTCCTGTACAAGAAAAGAATGATATTTCCTTTTCTTTTACATATT GATAATATTGGAGGCTGATGCCAAAGTTATTCCATTATACTACTAAAAA]




>consensus_5203#0
AAGGGGGATGAGGATCTCATACCCAAAGTTGCAGATGCCGGCATCCGTGCCCTGCTAGAT
CGATTAGGCGGTGTAGGCCCTTCATCGAGAACATCTTACGATCCTTTCCTTGATCCCAGA
ATGAGGGAATCCATAAATTTTTCCATTCAAAGTGATGTATACAGTTTTGGTGTTTTCCTT
GTGGAGTTGCTCAGTGGCAAGAGGGCTCTGTCTGATCAAAACATCATTCGATGGGTGCAG
AACTTCCAACAATCAAGTGATATCTCTGCAATTGCAGATAACAGAATGGCCAGTGCCTAT
ACCTCAGAAGGCATGAGAGAATTTCTGCGGTTGACATCGTGGTGCGTGAACCCGACGAGC
GAGCATCGCCCATCGATGAACTTGGTGGAGGCGGAGATAAACCGAATTCGCGAGCAAGAG
ATGAGGATGACCACAATCATGCCAGAAAGCACACCAACTGTGACTCTAGGTAGTCAGCTC
TTCACAACATCAGGTTGAAGAAGAACTAGCTAGTTTCCTCTCATCATCAGAGTTATAGAC
TAGCAATTCCCTTTCCATTTATTATTTCTCTCTCTTTTCTTTGGTCTTCATAGTGATTCA
GCTGTAACTCAAGTGTACAAAAAAGGAACAGCTGTGAGGTTCCCTTTATTNCTTTTCCTG
TACAAGAAAAGAATGATATTTCCNTTTCTTTTACATATTGGATAATATTGGAGGCTGATG
CCAAAGTTATTCCATTATACTACTAAAAA

consensusID : consensus_5203#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 173
fasta sequence

                              [GTGGTGCGTGAACCCGACGAGCGAGCATCGCCATCGATGAACTTGGTGGAGGCGGAGATAAACCGAATTCGCGAGCAAGAGATGAGGATGACACCAATCATGCAGAAAGCAACCACACTGTGACTCATGGATGTACGCTCTTACACAACTACGGTTAGAAGAAGAACTGCATG]

[+] EMBL AA751012             [GTGGTGCGTGAACCCGACGAGCGAGCATCGCCATCGATGAACTTGGTGGAGGCGGAGATAAACCGAATTCGCGAGCAAGAGATGAGGATGACACCAATCATGCAGAAAGCAACCACACTGTGACTCATGGATGTACGCTCTTACACAACTACGGTTAGAAGAAGAACTGCATG]




>consensus_5203#1
GTGGTGCGTGAACCCGACGAGCGAGCATCGCCATCGATGAACTTGGTGGAGGCGGAGATA
AACCGAATTCGCGAGCAAGAGATGAGGATGACACCAATCATGCAGAAAGCAACCACACTG
TGACTCATGGATGTACGCTCTTACACAACTACGGTTAGAAGAAGAACTGCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5203#0      AAGGGGGATGAGGATCTCATACCCAAAGTTGCAGATGCCGGCATCCGTGCCCTGCTAGAT 60
consensus_5203#1      ------------------------------------------------------------
                                                                                  

consensus_5203#0      CGATTAGGCGGTGTAGGCCCTTCATCGAGAACATCTTACGATCCTTTCCTTGATCCCAGA 120
consensus_5203#1      ------------------------------------------------------------
                                                                                  

consensus_5203#0      ATGAGGGAATCCATAAATTTTTCCATTCAAAGTGATGTATACAGTTTTGGTGTTTTCCTT 180
consensus_5203#1      ------------------------------------------------------------
                                                                                  

consensus_5203#0      GTGGAGTTGCTCAGTGGCAAGAGGGCTCTGTCTGATCAAAACATCATTCGATGGGTGCAG 240
consensus_5203#1      ------------------------------------------------------------
                                                                                  

consensus_5203#0      AACTTCCAACAATCAAGTGATATCTCTGCAATTGCAGATAACAGAATGGCCAGTGCCTAT 300
consensus_5203#1      ------------------------------------------------------------
                                                                                  

consensus_5203#0      ACCTCAGAAGGCATGAGAGAATTTCTGCGGTTGACATCGTGGTGCGTGAACCCGACGAGC 360
consensus_5203#1      --------------------------------------GTGGTGCGTGAACCCGACGAGC 22
                                                            **********************

consensus_5203#0      GAGCATCGCCCATCGATGAACTTGGTGGAGGCGGAGATAAACCGAATTCGCGAGCAAGAG 420
consensus_5203#1      GAGCATCGCC-ATCGATGAACTTGGTGGAGGCGGAGATAAACCGAATTCGCGAGCAAGAG 81
                      ********** *************************************************

consensus_5203#0      ATGAGGATGACCACAATCATGCCAGAAAGCACACCAACTGTGACTCTAGGTAGTCAGCTC 480
consensus_5203#1      ATGAGGATGACACCAATCATGC-AGAAAGCAACCACACTGTGACTCATGGATGTACGCTC 140
                      ***********  ********* ********  *  **********  **  **  ****

consensus_5203#0      TT-CACAACATCAGGTTGAAGAAGAACTAGCTAGTTTCCTCTCATCATCAGAGTTATAGA 539
consensus_5203#1      TTACACAACTACGGTTAGAAGAAGAACTGCATG--------------------------- 173
                      ** ******  * * * ***********   *                            

consensus_5203#0      CTAGCAATTCCCTTTCCATTTATTATTTCTCTCTCTTTTCTTTGGTCTTCATAGTGATTC 599
consensus_5203#1      ------------------------------------------------------------
                                                                                  

consensus_5203#0      AGCTGTAACTCAAGTGTACAAAAAAGGAACAGCTGTGAGGTTCCCTTTATTNCTTTTCCT 659
consensus_5203#1      ------------------------------------------------------------
                                                                                  

consensus_5203#0      GTACAAGAAAAGAATGATATTTCCNTTTCTTTTACATATTGGATAATATTGGAGGCTGAT 719
consensus_5203#1      ------------------------------------------------------------
                                                                                  

consensus_5203#0      GCCAAAGTTATTCCATTATACTACTAAAAA 749
consensus_5203#1      ------------------------------