cluster # 5210

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Oryza sativa
cluster # 5210 cluster # 5210 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5210#0 length = 539 sequences # 2

consensus_5210#1 length = 119 sequences # 1

consensusID : consensus_5210#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 539
fasta sequence

                              [CAACTGCGACATCCGCGCGTACGTGGCGGCGCTGGAGATCATGCAGAACTACTACCCGGAGAGGCTGGGGAGGGTGTTCTTGATCCATGTCCCCTACGTGTTCATGGCGGCCTGGAAGATCATCTACCCCTTC-ATCGACGACAACACCAAGAAGAAGTTCGTCTTCGTCGCCGACAAGGACCTCCACGC-CACGCTCCGCGACGCCATCGACGACTCCAACCTCGCCGAGGACTACGGCGGCAAGCTCAAGCTCGTCTCGCCCCTTATTAATGGCGCCACCGAATCCAATCGCCGCCGGTAGATAGCTCTCGCGTCGCGTGCATGAAGATCGATATGATGTATGTACACCCATCTCGAGATCCAATTTAATGGTATGTATGTAGCACGTGTACGGTGTACGTGAATGTATGTTACTAGTATGTATACGGGACAGGAGGACACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGAATTACGGCTCTGAACAGTACTGATCATGAATGGTCACTGTTGATGAGAAATGCAAGTTC]

[+] EMBL AK099525             [CAACTGCGACATCCGCGCGTACGTGGCGGCGCTGGAGATCATGCAGAACTACTACCCGGAGAGGCTGGGGAGGGTGTTCTTGATCCATGTCCCCTACGTGTTCATGGCGGCCTGGAAGATCATCTACCCCTTC ATCGACGACAACACCAAGAAGAAGTTCGTCTTCGTCGCCGACAAGGACCTCCACGC CACGCTCCGCGACGCCATCGACGACTCCAACCTCGCCGAGGACTACGGCGGCAAGCTCAAGCTCGTCTCGCCCCTTATTAATGGCGCCACCGAATCCAATCGCCGCCGGTAGATAGCTCTCGCGTCGCGTGCATGAAGATCGATATGATGTATGTACACCCATCTCGAGATCCAATTTAATGGTATGTATGTAGCACGTGTACGGTGTACGTGAATGTATGTTACTAGTATGTATACGGGACAGGAGGACACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGAATTACGGCTCTGAACAGTACTGATCATGAATGGTCACTGTTGATGAGAAATGCAAGTTC]
[-] EMBL AU065884             [                                                                 ttGGGAAGTTG TCTTGATCCATGTCCCCTACGTGTTCATGGCGGCCTGGAAGATCATCTACCCCTTCAATCGACGACAACACCAAGAAGAAGTTCGTCTTCGTCGCCGACAAGGACCTCCACGCNCAACCTCCGCGACGCCATCGACGACTCCAACCTCGCCGAGGACTACGGCGGCAAGCTCAAGCTCGTCTCGCCCCTTATTAATGGCGCCACCGAATCCAATCGCCGCCGGTAGATAGCTCTC CGTCGCGTGCATGAAGATCGATATGATGTATGTACACCCATCTCGAGATCCAATTTAATGGTATGTATGTAGCACGTGTACGGTGTACGTGAATGTATGTTACTAGTATGTATACGGGACAGGAGGACACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGAATTACGGCTCTGAACAGTAaaanana                                 ]




>consensus_5210#0
CAACTGCGACATCCGCGCGTACGTGGCGGCGCTGGAGATCATGCAGAACTACTACCCGGA
GAGGCTGGGGAGGGTGTTCTTGATCCATGTCCCCTACGTGTTCATGGCGGCCTGGAAGAT
CATCTACCCCTTCATCGACGACAACACCAAGAAGAAGTTCGTCTTCGTCGCCGACAAGGA
CCTCCACGCCACGCTCCGCGACGCCATCGACGACTCCAACCTCGCCGAGGACTACGGCGG
CAAGCTCAAGCTCGTCTCGCCCCTTATTAATGGCGCCACCGAATCCAATCGCCGCCGGTA
GATAGCTCTCGCGTCGCGTGCATGAAGATCGATATGATGTATGTACACCCATCTCGAGAT
CCAATTTAATGGTATGTATGTAGCACGTGTACGGTGTACGTGAATGTATGTTACTAGTAT
GTATACGGGACAGGAGGACACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGA
ATTACGGCTCTGAACAGTACTGATCATGAATGGTCACTGTTGATGAGAAATGCAAGTTC

consensusID : consensus_5210#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 119
fasta sequence

                              [ACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGAATTACGGCTCTGAACAGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF301689             [ACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGAATTACGGCTCTGAACAGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5210#1
ACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGAATTACGGCTCTGAACAGTN
NAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5210#0      CAACTGCGACATCCGCGCGTACGTGGCGGCGCTGGAGATCATGCAGAACTACTACCCGGA 60
consensus_5210#1      ------------------------------------------------------------
                                                                                  

consensus_5210#0      GAGGCTGGGGAGGGTGTTCTTGATCCATGTCCCCTACGTGTTCATGGCGGCCTGGAAGAT 120
consensus_5210#1      ------------------------------------------------------------
                                                                                  

consensus_5210#0      CATCTACCCCTTCATCGACGACAACACCAAGAAGAAGTTCGTCTTCGTCGCCGACAAGGA 180
consensus_5210#1      ------------------------------------------------------------
                                                                                  

consensus_5210#0      CCTCCACGCCACGCTCCGCGACGCCATCGACGACTCCAACCTCGCCGAGGACTACGGCGG 240
consensus_5210#1      ------------------------------------------------------------
                                                                                  

consensus_5210#0      CAAGCTCAAGCTCGTCTCGCCCCTTATTAATGGCGCCACCGAATCCAATCGCCGCCGGTA 300
consensus_5210#1      ------------------------------------------------------------
                                                                                  

consensus_5210#0      GATAGCTCTCGCGTCGCGTGCATGAAGATCGATATGATGTATGTACACCCATCTCGAGAT 360
consensus_5210#1      ------------------------------------------------------------
                                                                                  

consensus_5210#0      CCAATTTAATGGTATGTATGTAGCACGTGTACGGTGTACGTGAATGTATGTTACTAGTAT 420
consensus_5210#1      ------------------------------------------------------------
                                                                                  

consensus_5210#0      GTATACGGGACAGGAGGACACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGA 480
consensus_5210#1      -------------------ACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGA 41
                                         *****************************************

consensus_5210#0      ATTACGGCTCTGAACAGTACTGATCATGAATGGTCACTGTTGATGAGAAATGCAAGTTC- 539
consensus_5210#1      ATTACGGCTCTGAACAGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 101
                      ******************    *  *  **     *      *  * ***   **     

consensus_5210#0      ------------------
consensus_5210#1      AAAAAAAAAAAAAAAAAA 119