These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 539 fasta sequence [CAACTGCGACATCCGCGCGTACGTGGCGGCGCTGGAGATCATGCAGAACTACTACCCGGAGAGGCTGGGGAGGGTGTTCTTGATCCATGTCCCCTACGTGTTCATGGCGGCCTGGAAGATCATCTACCCCTTC-ATCGACGACAACACCAAGAAGAAGTTCGTCTTCGTCGCCGACAAGGACCTCCACGC-CACGCTCCGCGACGCCATCGACGACTCCAACCTCGCCGAGGACTACGGCGGCAAGCTCAAGCTCGTCTCGCCCCTTATTAATGGCGCCACCGAATCCAATCGCCGCCGGTAGATAGCTCTCGCGTCGCGTGCATGAAGATCGATATGATGTATGTACACCCATCTCGAGATCCAATTTAATGGTATGTATGTAGCACGTGTACGGTGTACGTGAATGTATGTTACTAGTATGTATACGGGACAGGAGGACACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGAATTACGGCTCTGAACAGTACTGATCATGAATGGTCACTGTTGATGAGAAATGCAAGTTC] [+] EMBL AK099525 [CAACTGCGACATCCGCGCGTACGTGGCGGCGCTGGAGATCATGCAGAACTACTACCCGGAGAGGCTGGGGAGGGTGTTCTTGATCCATGTCCCCTACGTGTTCATGGCGGCCTGGAAGATCATCTACCCCTTC ATCGACGACAACACCAAGAAGAAGTTCGTCTTCGTCGCCGACAAGGACCTCCACGC CACGCTCCGCGACGCCATCGACGACTCCAACCTCGCCGAGGACTACGGCGGCAAGCTCAAGCTCGTCTCGCCCCTTATTAATGGCGCCACCGAATCCAATCGCCGCCGGTAGATAGCTCTCGCGTCGCGTGCATGAAGATCGATATGATGTATGTACACCCATCTCGAGATCCAATTTAATGGTATGTATGTAGCACGTGTACGGTGTACGTGAATGTATGTTACTAGTATGTATACGGGACAGGAGGACACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGAATTACGGCTCTGAACAGTACTGATCATGAATGGTCACTGTTGATGAGAAATGCAAGTTC] [-] EMBL AU065884 [ ttGGGAAGTTG TCTTGATCCATGTCCCCTACGTGTTCATGGCGGCCTGGAAGATCATCTACCCCTTCAATCGACGACAACACCAAGAAGAAGTTCGTCTTCGTCGCCGACAAGGACCTCCACGCNCAACCTCCGCGACGCCATCGACGACTCCAACCTCGCCGAGGACTACGGCGGCAAGCTCAAGCTCGTCTCGCCCCTTATTAATGGCGCCACCGAATCCAATCGCCGCCGGTAGATAGCTCTC CGTCGCGTGCATGAAGATCGATATGATGTATGTACACCCATCTCGAGATCCAATTTAATGGTATGTATGTAGCACGTGTACGGTGTACGTGAATGTATGTTACTAGTATGTATACGGGACAGGAGGACACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGAATTACGGCTCTGAACAGTAaaanana ] consensusID : consensus_5210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 119 fasta sequence [ACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGAATTACGGCTCTGAACAGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF301689 [ACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGAATTACGGCTCTGAACAGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5210#0 CAACTGCGACATCCGCGCGTACGTGGCGGCGCTGGAGATCATGCAGAACTACTACCCGGA 60 consensus_5210#1 ------------------------------------------------------------ consensus_5210#0 GAGGCTGGGGAGGGTGTTCTTGATCCATGTCCCCTACGTGTTCATGGCGGCCTGGAAGAT 120 consensus_5210#1 ------------------------------------------------------------ consensus_5210#0 CATCTACCCCTTCATCGACGACAACACCAAGAAGAAGTTCGTCTTCGTCGCCGACAAGGA 180 consensus_5210#1 ------------------------------------------------------------ consensus_5210#0 CCTCCACGCCACGCTCCGCGACGCCATCGACGACTCCAACCTCGCCGAGGACTACGGCGG 240 consensus_5210#1 ------------------------------------------------------------ consensus_5210#0 CAAGCTCAAGCTCGTCTCGCCCCTTATTAATGGCGCCACCGAATCCAATCGCCGCCGGTA 300 consensus_5210#1 ------------------------------------------------------------ consensus_5210#0 GATAGCTCTCGCGTCGCGTGCATGAAGATCGATATGATGTATGTACACCCATCTCGAGAT 360 consensus_5210#1 ------------------------------------------------------------ consensus_5210#0 CCAATTTAATGGTATGTATGTAGCACGTGTACGGTGTACGTGAATGTATGTTACTAGTAT 420 consensus_5210#1 ------------------------------------------------------------ consensus_5210#0 GTATACGGGACAGGAGGACACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGA 480 consensus_5210#1 -------------------ACTACGAATTCGAGGACGTACGTGCGTGCTATATACATTGA 41 ***************************************** consensus_5210#0 ATTACGGCTCTGAACAGTACTGATCATGAATGGTCACTGTTGATGAGAAATGCAAGTTC- 539 consensus_5210#1 ATTACGGCTCTGAACAGTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 101 ****************** * * ** * * * *** ** consensus_5210#0 ------------------ consensus_5210#1 AAAAAAAAAAAAAAAAAA 119 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||