cluster # 5213

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Oryza sativa
cluster # 5213 cluster # 5213 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5213#0 length = 555 sequences # 1

consensus_5213#1 length = 466 sequences # 1
consensus_5213#2 length = 327 sequences # 1

consensusID : consensus_5213#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [CCCTCTTACTCATACCCCTTGAAACGGTGAATCCAGTAGTACAGGCATATGTACAACAAAGGTGCATGATTGCATCCCAGGGCCTCACTTCATAAGTACAAGAAACAAACAAACAAAAAAAAAACAGAGAAAAAACAAAAAATTACACTCACCTAGCTAACTAAGCAATTATATGCCACACTTGCTGCTGATGGTGATTAAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATCACTAATTAGGAGACAGTAATTAATTAAAAAAACATTCTGTCCGTGACGTCACTTCTTCTTGGCGATAGCGCCGCCGCCGCCGTCGTAGCGGCGGCTGCTGCTGCCGCCGCCGCCGCCGCTCCTCACCTCCTCCGGCGCGATGAACGACTCCGGGCAGAGGCCGGCGACGTTGAAGGCGACGTCGTCGATGGTCCACGCCTCCTCCATCCGCGTGACGGCGCGGGCGGCGCCGACGTCGGCGCCGAAGCGGGCGAGGTGGGCGACGGAGGTGCCCGCGTGCGCCACCACGGCGCCGT]

[+] EMBL CB678786             [CCCTCTTACTCATACCCCTTGAAACGGTGAATCCAGTAGTACAGGCATATGTACAACAAAGGTGCATGATTGCATCCCAGGGCCTCACTTCATAAGTACAAGAAACAAACAAACAAAAAAAAAACAGAGAAAAAACAAAAAATTACACTCACCTAGCTAACTAAGCAATTATATGCCACACTTGCTGCTGATGGTGATTAAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATCACTAATTAGGAGACAGTAATTAATTAAAAAAACATTCTGTCCGTGACGTCACTTCTTCTTGGCGATAGCGCCGCCGCCGCCGTCGTAGCGGCGGCTGCTGCTGCCGCCGCCGCCGCCGCTCCTCACCTCCTCCGGCGCGATGAACGACTCCGGGCAGAGGCCGGCGACGTTGAAGGCGACGTCGTCGATGGTCCACGCCTCCTCCATCCGCGTGACGGCGCGGGCGGCGCCGACGTCGGCGCCGAAGCGGGCGAGGTGGGCGACGGAGGTGCCCGCGTGCGCCACCACGGCGCCGT]




>consensus_5213#0
CCCTCTTACTCATACCCCTTGAAACGGTGAATCCAGTAGTACAGGCATATGTACAACAAA
GGTGCATGATTGCATCCCAGGGCCTCACTTCATAAGTACAAGAAACAAACAAACAAAAAA
AAAACAGAGAAAAAACAAAAAATTACACTCACCTAGCTAACTAAGCAATTATATGCCACA
CTTGCTGCTGATGGTGATTAAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAAT
TAAACCACCCAAGCTAATCACTAATTAGGAGACAGTAATTAATTAAAAAAACATTCTGTC
CGTGACGTCACTTCTTCTTGGCGATAGCGCCGCCGCCGCCGTCGTAGCGGCGGCTGCTGC
TGCCGCCGCCGCCGCCGCTCCTCACCTCCTCCGGCGCGATGAACGACTCCGGGCAGAGGC
CGGCGACGTTGAAGGCGACGTCGTCGATGGTCCACGCCTCCTCCATCCGCGTGACGGCGC
GGGCGGCGCCGACGTCGGCGCCGAAGCGGGCGAGGTGGGCGACGGAGGTGCCCGCGTGCG
CCACCACGGCGCCGT

consensusID : consensus_5213#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [GCTGAGGCAACGAAGGTGTTCGTCCATGGCGCCGCAGCTGGCCACGCTGGCGGAGGAGCCGGGGGGCGGGGAGGAGGCGGCGCGGGCGCGGCGGAAGACCGGACCTGCACGCGAGCGCTCCACCGCTGGGCGCGGGCGCGCATCCCGCTCCGGTTTCTTTCCGGTGGGGGAGGTGGCGGAGGTGGGGATTAAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATCACTAATTAGGAGACAGTAATTAATTAAAAAAACATTCTGTCCGTGACGTCACTTCTTCTTGGCGATAGCGCCGCCGCCGCCGTCGTAGCGGCGGCTGCTGCTGCCGCCGCCGCCGCCGCTCCTCACCTCCTCCGGCGCGATGAACGACTCCGGGCAGAGGCCGGCGACCTTGAAGGCGACGTCGTCAATGGGCCACGCCTCCTCCATCCGCGTGAC]

[+] EMBL CB678785             [GCTGAGGCAACGAAGGTGTTCGTCCATGGCGCCGCAGCTGGCCACGCTGGCGGAGGAGCCGGGGGGCGGGGAGGAGGCGGCGCGGGCGCGGCGGAAGACCGGACCTGCACGCGAGCGCTCCACCGCTGGGCGCGGGCGCGCATCCCGCTCCGGTTTCTTTCCGGTGGGGGAGGTGGCGGAGGTGGGGATTAAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATCACTAATTAGGAGACAGTAATTAATTAAAAAAACATTCTGTCCGTGACGTCACTTCTTCTTGGCGATAGCGCCGCCGCCGCCGTCGTAGCGGCGGCTGCTGCTGCCGCCGCCGCCGCCGCTCCTCACCTCCTCCGGCGCGATGAACGACTCCGGGCAGAGGCCGGCGACCTTGAAGGCGACGTCGTCAATGGGCCACGCCTCCTCCATCCGCGTGAC]




>consensus_5213#1
GCTGAGGCAACGAAGGTGTTCGTCCATGGCGCCGCAGCTGGCCACGCTGGCGGAGGAGCC
GGGGGGCGGGGAGGAGGCGGCGCGGGCGCGGCGGAAGACCGGACCTGCACGCGAGCGCTC
CACCGCTGGGCGCGGGCGCGCATCCCGCTCCGGTTTCTTTCCGGTGGGGGAGGTGGCGGA
GGTGGGGATTAAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACC
CAAGCTAATCACTAATTAGGAGACAGTAATTAATTAAAAAAACATTCTGTCCGTGACGTC
ACTTCTTCTTGGCGATAGCGCCGCCGCCGCCGTCGTAGCGGCGGCTGCTGCTGCCGCCGC
CGCCGCCGCTCCTCACCTCCTCCGGCGCGATGAACGACTCCGGGCAGAGGCCGGCGACCT
TGAAGGCGACGTCGTCAATGGGCCACGCCTCCTCCATCCGCGTGAC

consensusID : consensus_5213#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAACCCTNTTACTCANACTGGTTGNTNTTGGGAATCCAGTAGTACAGGCATNTGTACAACAAAGGNGCATGATTGCATCCCAGGGCCTCACTTAATAAGTCCAAGAAACAAACAAACAAAAAAAAAACAGNGAAAAAACAAAAAATTACNCTCACCTAGCTAACTAAGCAATTATNTGCCACACTTGCTGNTGATGGGGATTAAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATCACTAATTAGGAGACAGNAATTAATTAA]

[-] EMBL AU173007             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAACCCTNTTACTCANACTGGTTGNTNTTGGGAATCCAGTAGTACAGGCATNTGTACAACAAAGGNGCATGATTGCATCCCAGGGCCTCACTTAATAAGTCCAAGAAACAAACAAACAAAAAAAAAACAGNGAAAAAACAAAAAATTACNCTCACCTAGCTAACTAAGCAATTATNTGCCACACTTGCTGNTGATGGGGATTAAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATCACTAATTAGGAGACAGNAATTAATTAA]




>consensus_5213#2
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAACCCTNTTACTCANACTGGT
TGNTNTTGGGAATCCAGTAGTACAGGCATNTGTACAACAAAGGNGCATGATTGCATCCCA
GGGCCTCACTTAATAAGTCCAAGAAACAAACAAACAAAAAAAAAACAGNGAAAAAACAAA
AAATTACNCTCACCTAGCTAACTAAGCAATTATNTGCCACACTTGCTGNTGATGGGGATT
AAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATC
ACTAATTAGGAGACAGNAATTAATTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5213#0      -----------------------------------------CCCTCTTACTCATACCCCT 19
consensus_5213#2      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAACCCTNTTACTCANACTGGT 60
consensus_5213#1      ----------------------------------------GCTGAGGCAACGAAGGTGTT 20
                                                               *      *   *      *

consensus_5213#0      TGAAACGGTGAATCCAGTAGTACAGGCATATGTACAACAAAGGTGCATGATTGCATCCCA 79
consensus_5213#2      TGNTNTTGGGAATCCAGTAGTACAGGCATNTGTACAACAAAGGNGCATGATTGCATCCCA 120
consensus_5213#1      CGTCCATGGCGCCGCAGCTGGCCACGC-------TGGCGGAGGAGCCGGGGGGCGGGGAG 73
                       *     *      ***  *  ** **          *  *** **  *   **      

consensus_5213#0      GGGCCTCACTTCATAAGTACAAGAAACAAACAAACAAAAAAAAAACAGAGAAAAAACAAA 139
consensus_5213#2      GGGCCTCACTTAATAAGTCCAAGAAACAAACAAACAAAAAAAAAACAGNGAAAAAACAAA 180
consensus_5213#1      GAGGCGGCGCGGGCGCGGCGGAAGACCGGACCTGCACGCGAG---CGCTCCACCGCTGGG 130
                      * * *           *    *  * *  **   **    *    *     *        

consensus_5213#0      AAATTACACTCACCTAGCTAACTAAGCAATTATATGCCACACTTGCTGCTGATGGTGATT 199
consensus_5213#2      AAATTACNCTCACCTAGCTAACTAAGCAATTATNTGCCACACTTGCTGNTGATGGGGATT 240
consensus_5213#1      CGCGGGCGCGCATCCCGCTCCGGTTTCTTTCCGGTGGGGGAGGTGGCGGAGGTGGGGATT 190
                            * * ** *  ***       *  *    **    *  **  *  * *** ****

consensus_5213#0      AAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATC 259
consensus_5213#2      AAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATC 300
consensus_5213#1      AAAAGCTCCAGGTTGATCCACCGGGTTAACTAATAATTAATTAAACCACCCAAGCTAATC 250
                      ************************************************************

consensus_5213#0      ACTAATTAGGAGACAGTAATTAATTAAAAAAACATTCTGTCCGTGACGTCACTTCTTCTT 319
consensus_5213#2      ACTAATTAGGAGACAGNAATTAATTAA--------------------------------- 327
consensus_5213#1      ACTAATTAGGAGACAGTAATTAATTAAAAAAACATTCTGTCCGTGACGTCACTTCTTCTT 310
                      **************** **********                                 

consensus_5213#0      GGCGATAGCGCCGCCGCCGCCGTCGTAGCGGCGGCTGCTGCTGCCGCCGCCGCCGCCGCT 379
consensus_5213#2      ------------------------------------------------------------
consensus_5213#1      GGCGATAGCGCCGCCGCCGCCGTCGTAGCGGCGGCTGCTGCTGCCGCCGCCGCCGCCGCT 370
                                                                                  

consensus_5213#0      CCTCACCTCCTCCGGCGCGATGAACGACTCCGGGCAGAGGCCGGCGACGTTGAAGGCGAC 439
consensus_5213#2      ------------------------------------------------------------
consensus_5213#1      CCTCACCTCCTCCGGCGCGATGAACGACTCCGGGCAGAGGCCGGCGACCTTGAAGGCGAC 430
                                                                                  

consensus_5213#0      GTCGTCGATGGTCCACGCCTCCTCCATCCGCGTGACGGCGCGGGCGGCGCCGACGTCGGC 499
consensus_5213#2      ------------------------------------------------------------
consensus_5213#1      GTCGTCAATGGGCCACGCCTCCTCCATCCGCGTGAC------------------------ 466
                                                                                  

consensus_5213#0      GCCGAAGCGGGCGAGGTGGGCGACGGAGGTGCCCGCGTGCGCCACCACGGCGCCGT 555
consensus_5213#2      --------------------------------------------------------
consensus_5213#1      --------------------------------------------------------