|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2090 fasta sequence
[CGCCGTGCCGAGCTCTCCTCCTCCGCCAGATCCGCACTAGCGGCTCGGTTATTCTCTCCGGCACGAGAGACGAGGGTTCCCCGGCGAGCGAGCGAGGGCCGGCGATGGCGGAGCCGGAGCAGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCTCTCCTTCGTGAGCTCGACAGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGGTATGCATTTTAGTTTTGGTCTCCATGCTAATTATTCTTGTAATTATCCTCCAAAAATATCTATGCATTTACATCTGCTACCTGTGTTTAGTTTTAACTGTACCACCAAAAGAGTTTCAGCCAACTCACATTCTGTCTTAAGATTTCATAATACCCCATAGTTGGCCCACCTCCTTGATTATTTTTTGTATGTGTTGATTGCTACCTTTCCATTTGCATATGTTTTCTCTGCATGAATTTAGTCATGCCATGTCGTTCGACAAACTTGATATTGGTAAATACCTCCTTTCTGGTATATCTCTGTATTGTTGGTCAGTCTTCAAGCTTGTTCAATCAGAATGTTAATTAATGTGCTGTGATCCTAACTGCATGCATGTGATAGAGGTGTTTGTGCATGTGCAATGCAATCTTGCTTGCCTGTGAGCATTTCATTGATTTCACTAAGATGGCTTCCATGGTTCCATTCTGCAAACAACTAAACTCCACGCACCGCTTAAATGCATTATCTTATTGGCCAACTTGAGAAGCATTTTTTTTTTAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGGTGGGTTGCACTGTCATTTATATTTAGTATGCTTTCAATTTTATCTTTGTTTGAAATAACTTGACACACTTGTGTTGTCTTCTCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGTTGATTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTACGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTATTGCCAATCACCTTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATCTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAGCTTGGAATTGATTGTTCATCTTCTGTATTCAGTCAAGTTATGGTGTTCTTTAAAGTCCATTCTTGTAATCTAATACAACATACAGCTGAAAAGAATGCAAGTAATCTATAGAGTTCGTTTGTTTGTTTGGGTAGGCAGGTCATGCAACATTGTCTTGGATAATATGATTGTGAAGTACAGAGGAGCATTCTGTAAAGGCTATTTCATTTTCAGTTAGTCGAACTAACTGATATTCTGATAGACAGTTGAGTTGGCTGAGCAGTTCTATCACTTGGAAAGCTATTGAAAACAACTCATGTAACAGCTGAACAAAAA]
[+] EMBL AK071085 [CGCCGTGCCGAGCTCTCCTCCTCCGCCAGATCCGCACTAGCGGCTCGGTTATTCTCTCCGGCACGAGAGACGAGGGTTCCCCGGCGAGCGAGCGAGGGCCGGCGATGGCGGAGCCGGAGCAGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCTCTCCTTCGTGAGCTCGACAGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGGTATGCATTTTAGTTTTGGTCTCCATGCTAATTATTCTTGTAATTATCCTCCAAAAATATCTATGCATTTACATCTGCTACCTGTGTTTAGTTTTAACTGTACCACCAAAAGAGTTTCAGCCAACTCACATTCTGTCTTAAGATTTCATAATACCCCATAGTTGGCCCACCTCCTTGATTATTTTTTGTATGTGTTGATTGCTACCTTTCCATTTGCATATGTTTTCTCTGCATGAATTTAGTCATGCCATGTCGTTCGACAAACTTGATATTGGTAAATACCTCCTTTCTGGTATATCTCTGTATTGTTGGTCAGTCTTCAAGCTTGTTCAATCAGAATGTTAATTAATGTGCTGTGATCCTAACTGCATGCATGTGATAGAGGTGTTTGTGCATGTGCAATGCAATCTTGCTTGCCTGTGAGCATTTCATTGATTTCACTAAGATGGCTTCCATGGTTCCATTCTGCAAACAACTAAACTCCACGCACCGCTTAAATGCATTATCTTATTGGCCAACTTGAGAAGCATTTTTTTTTTAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGGTGGGTTGCACTGTCATTTATATTTAGTATGCTTTCAATTTTATCTTTGTTTGAAATAACTTGACACACTTGTGTTGTCTTCTCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGTTGATTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTACGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTATTGCCAATCACCTTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATCTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAGCTTGGAATTGATTGTTCATCTTCTGTATTCAGTCAAGTTATGGTGTTCTTTAAAGTCCATTCTTGTAATCTAATACAACATACAGCTGAAAAGAATGCAAGTAATCTATAGAGTTCGTTTGTTTGTTTGGGTAGGCAGGTCATGCAACATTGTCTTGGATAATATGATTGTGAAGTACAGAGGAGCATTCTGTAAAGGCTATTTCATTTTCAGTTAGTCGAACTAAC ]
[+] EMBL AU173030 [ AATTCCCGGATATCTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAGCTTGGAATTGATTGTTCATCTTCTGTATTCAGTCAAGTTATGGTGTTCTTTAAAGTCCATTCTTGTAATCTAATACAACATACAGCTGAAAAGAATGCAAGTAATCTATAGAGTTCGTTTGTTTGTTTGGGTAGGCAGGTCATGCAACATTGTCTTGGATAATATGATTGTGAAGTACAGAGGAGCATTCTGTAAAGGCTATTTCATTTTCAGTTAGTCGAACTAACTGATATTCTGATAGACAGTTGAGTTGGCTGAGCAGTTCTATCACTTGGAAAGCTATTGAAAACAACTCATGTAACAGCTGAACAAAAA]
consensusID : consensus_5215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence
[AGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTG]
[+] EMBL AU173029 [AGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5215#0 CGCCGTGCCGAGCTCTCCTCCTCCGCCAGATCCGCACTAGCGGCTCGGTTATTCTCTCCG 60
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 GCACGAGAGACGAGGGTTCCCCGGCGAGCGAGCGAGGGCCGGCGATGGCGGAGCCGGAGC 120
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 AGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCC 180
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 CCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCG 240
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 GCCTATCTCTCCTTCGTGAGCTCGACAGTGTTAACAAGGATCAAATAGCCAAATGGATTT 300
consensus_5215#1 --------------------------AGTGTTAACAAGGATCAAATAGCCAAATGGATTT 34
**********************************
consensus_5215#0 TGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGAT 360
consensus_5215#1 TGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGAT 94
************************************************************
consensus_5215#0 TCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATG 420
consensus_5215#1 TCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATG 154
************************************************************
consensus_5215#0 GTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATT 480
consensus_5215#1 GTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATT 214
************************************************************
consensus_5215#0 TAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATG 540
consensus_5215#1 TAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATG 274
************************************************************
consensus_5215#0 GAAGGT--ATGCATTTTAGTTTTGGTCTCCATGCTAATTATTCTTGTAATTATCCTCCAA 598
consensus_5215#1 GAAGCTTCATGCCTACTCATATTGGTGCGGAAACAGAC-----------CTACGCTTTGT 323
**** * **** * * * ***** * * * ** **
consensus_5215#0 AAATATCTATGCATTTACA-TCTGCTACCTGTGTTTAGTTTTAACTGTACC--ACCAAAA 655
consensus_5215#1 ATA---CTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGA 380
* * ** **** * ** ****** ** ** ** ** * * ** * *
consensus_5215#0 GAGTTTCAGCCAACTCACATTCTGTCTTAAGATTTCATAATACCCCATAGTTGGCCCACC 715
consensus_5215#1 AAAGGCCAAGCAATACATTCTTAGTTGCCAG-TCATACGATGGTG--------------- 424
* ** *** ** * ** ** * * **
consensus_5215#0 TCCTTGATTATTTTTTGTATGTGTTGATTGCTACCTTTCCATTTGCATATGTTTTCTCTG 775
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 CATGAATTTAGTCATGCCATGTCGTTCGACAAACTTGATATTGGTAAATACCTCCTTTCT 835
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 GGTATATCTCTGTATTGTTGGTCAGTCTTCAAGCTTGTTCAATCAGAATGTTAATTAATG 895
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 TGCTGTGATCCTAACTGCATGCATGTGATAGAGGTGTTTGTGCATGTGCAATGCAATCTT 955
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 GCTTGCCTGTGAGCATTTCATTGATTTCACTAAGATGGCTTCCATGGTTCCATTCTGCAA 1015
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 ACAACTAAACTCCACGCACCGCTTAAATGCATTATCTTATTGGCCAACTTGAGAAGCATT 1075
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 TTTTTTTTAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACT 1135
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 GTGCAGGTGGGTTGCACTGTCATTTATATTTAGTATGCTTTCAATTTTATCTTTGTTTGA 1195
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 AATAACTTGACACACTTGTGTTGTCTTCTCAGCTGCAATCTGCTCGATGCTAAAAGATTG 1255
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 GACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGG 1315
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 TGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTGGAGGGACATTCTGTGCTGTTGC 1375
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 AGCTTTGTGCCTGATGGGTTTCATTCAAGTTGATTTGGCATCAAATTTACAAGAACCATC 1435
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 ATCAATTGATGTACGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGG 1495
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 TTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGT 1555
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 CCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCT 1615
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 CTATTGCCAATCACCTTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATAT 1675
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 CTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCC 1735
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 ACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAGCTTGGAATTGATTGTTCATC 1795
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 TTCTGTATTCAGTCAAGTTATGGTGTTCTTTAAAGTCCATTCTTGTAATCTAATACAACA 1855
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 TACAGCTGAAAAGAATGCAAGTAATCTATAGAGTTCGTTTGTTTGTTTGGGTAGGCAGGT 1915
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 CATGCAACATTGTCTTGGATAATATGATTGTGAAGTACAGAGGAGCATTCTGTAAAGGCT 1975
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 ATTTCATTTTCAGTTAGTCGAACTAACTGATATTCTGATAGACAGTTGAGTTGGCTGAGC 2035
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 AGTTCTATCACTTGGAAAGCTATTGAAAACAACTCATGTAACAGCTGAACAAAAA 2090
consensus_5215#1 -------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||