These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1183 fasta sequence [CCAAATTTTTTTCCCTCTCTTCTCCCAACAACACACCATCGAGCAAAGCAAAGGCGAGAGGAGGAGAAGACGAGGAGTTTTCTCCCAATCCTGAGGGCTTGCAAGCAAAAATGGCCCCCCTCCCAACCCCACCACCACCATCCGCCCCTTCCTCCGCGCCCCCTTTCAAATCCAACGCCTCGAGCTCTCGCCCCAACCGCGCGCCGCCCGAGGGCGCGCCCACCTCGCCGGCGGCGGCCACCAGGCCGCCACCGTTCGCCATGGTCCCGGCGGTGTCCGAGGCCGTCCTCGCGGTGTTCGACGTCTCCACCACGCTCCGCTCGCAGGGGTACCTCGCCGGGCAGGAGCTGCCCAGCATCACCCTCCCCGAGGACCGCGCCCCGGAGGTGTTCGAGCGGCTGCTCGGGTCCTTCCTCGCGCAGTCGCATGGGCCCGGCGTGCTCCCGCCGCGCCCCATGCCTCCCCTGCTCGGGGACGGCACCCCCGTGGGGCTGCTCCGCCTGTACCTCGCCGTCAGGGCGTGCGGCGGGTTCGAGGCCGTGCGTTCGTGGGCGGCCGCCGCCGAGATGGCCGGCCTCAACCCCGCCATGGACGTCCCCATCATGCTGGTGTACCACAAGTACCTCTGCCCCCTGGAGGCGAGCTTCCTCAGGGCCCAGAAGCTGAGGGAGGAGGCCGGGAGCAGCGGCGGGAGCGCCAAGAAGGGCAAGTTCCTCGCGCCGGCGGCCAGGGACGCCGAGGGCGTCGAGGAGGTGCTGGACCTGAAGCGCAAGAGGGAGAACCTCGTGGGGATGCTCAACTGGGTGCGCCAGGTGGCGAAGAAGCCAGATCGGCGTCGCTCCGGCAGGAACGCCGCCGACAACCACCTCTCCATGGCGTTGATGTTCCGCCGCCAGATGTTCGTCGACGACGGCTTCAGCGACAAGCCCCATGGCTGCGCATCGCCTGAGCCCGAGGCAACAGAGCCTGAGGTGATGTGACAATCAAGCAGAAAGAGGTAAACAAGAAACTACATTACAAAACTTGGAATCGCAATTGTGATCTTGACATGAGAACAAGGATGCGATTTTATTTCTGATGCAAGAACTTTAGTCAATGTCTATTTTATGAGACTCGGTCTATTGCACTTGATTCCATGGATGTTTTACCGAATCTTGTTGTTTGAAATTTTGGAATGAACTGT] [+] EMBL AK108348 [CCAAATTTTTTTCCCTCTCTTCTCCCAACAACACACCATCGAGCAAAGCAAAGGCGAGAGGAGGAGAAGACGAGGAGTTTTCTCCCAATCCTGAGGGCTTGCAAGCAAAAATGGCCCCCCTCCCAACCCCACCACCACCATCCGCCCCTTCCTCCGCGCCCCCTTTCAAATCCAACGCCTCGAGCTCTCGCCCCAACCGCGCGCCGCCCGAGGGCGCGCCCACCTCGCCGGCGGCGGCCACCAGGCCGCCACCGTTCGCCATGGTCCCGGCGGTGTCCGAGGCCGTCCTCGCGGTGTTCGACGTCTCCACCACGCTCCGCTCGCAGGGGTACCTCGCCGGGCAGGAGCTGCCCAGCATCACCCTCCCCGAGGACCGCGCCCCGGAGGTGTTCGAGCGGCTGCTCGGGTCCTTCCTCGCGCAGTCGCATGGGCCCGGCGTGCTCCCGCCGCGCCCCATGCCTCCCCTGCTCGGGGACGGCACCCCCGTGGGGCTGCTCCGCCTGTACCTCGCCGTCAGGGCGTGCGGCGGGTTCGAGGCCGTGCGTTCGTGGGCGGCCGCCGCCGAGATGGCCGGCCTCAACCCCGCCATGGACGTCCCCATCATGCTGGTGTACCACAAGTACCTCTGCCCCCTGGAGGCGAGCTTCCTCAGGGCCCAGAAGCTGAGGGAGGAGGCCGGGAGCAGCGGCGGGAGCGCCAAGAAGGGCAAGTTCCTCGCGCCGGCGGCCAGGGACGCCGAGGGCGTCGAGGAGGTGCTGGACCTGAAGCGCAAGAGGGAGAACCTCGTGGGGATGCTCAACTGGGTGCGCCAGGTGGCGAAGAAGCCAGATCGGCGTCGCTCCGGCAGGAACGCCGCCGACAACCACCTCTCCATGGCGTTGATGTTCCGCCGCCAGATGTTCGTCGACGACGGCTTCAGCGACAAGCCCCATGGCTGCGCATCGCCTGAGCCCGAGGCAACAGAGCCTGAGGTGATGTGACAATCAAGCAGAAAGAGGTAAACAAGAAACTACATTACAAAACTTGGAATCGCAATTGTGATCTTGACATGAGAACAAGGATGCGATTTTATTTCTGATGCAAGAACTTTAGTCAATGTCTATTTTATGAGACTCGGTCTATTGCACTTGATTCCATGGATGTTTTACCGAATCTTGTTGTTTGAAATTTTGGAATGAACTGT] consensusID : consensus_5238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1008 fasta sequence [GTTGATGTTCCGCCGCCAGATGTTCGTCGACGACGGCTTCAGCGACAAGCCCCATGGCTGCGCATCGCCTGAGCCCGAGGCAACAGAGCCTGAGAGTGGTCTTACAACTGAGGATGGACAGTATGATGGATGGGATGATCAACAATCTGCAGGTGGGAGCAGTAACTGGAATTCTCGTGCAAATCGCTCTTTTGGTCTGGCAGATATTCCAGAATGGACTGGGAAGCCTTCATTACCTTATGAAGATCCAGATATGCTGAGATTTCTTGGAGAGCCTATTTTAACTCCAAAAAACAATGAGGTCTTTGATGATACTATTGGTAAGGGCAGGCCAGACAAGTGCAACTGTGAAGTCCCAGGTTCCACTTCTTGTGTCAGATTTCATGTGGCAGAGAAAAAGACCGAGCTGAAGCGTGAAATGGGCTCATCATACTATGCAATGAAGTTTGATGAAATTGGACAGGATGCAGCATTAACATGGCAAAAGGATGAAGAAAAGAAGTTTGAGACCATTGTCCAGCAGAATCTGCCTTCATCTAAGTACAATTTCTGGGACAAGCTGCGTGCCGCCTTCCGTTACAAAGGTGAACGTGCCCTTGTGAGTTACTACAACAATGTTTTCCAGCCGCGCAGAAGAGCCTTCCAGAATCGAGTAGCTCAACATGCTAATGGTGTAGATAGTGATGATGACTCAATTGAACCTGCCTTCCTACGCCTTCGTCAAGACGGTGGTAAGAGTAGATCCAGGTCTTCTGCTTCCTCTAGGAACCAAAATCAGTCTTAGGGTGATAGTCTTCTATAAGTAACTGGTGGCTCCAGTTCAGCTTCACCTGGAGCTCAAGACTCAAAAGGTTCATTTATTTTTATCTTCACCAATTGGTTACTGGACTGGAGACGGTAAGTGAGCTTCAATTGGGAATCTCACTGAGACTTGG-TGGTGGTTTTTGTGAATA-CCTCTGTGTGGCGCGTTGCCCGTTTACCTTAAAATCTCAATGCAACTGGGGTTGA] [+] EMBL AK059905 [GTTGATGTTCCGCCGCCAGATGTTCGTCGACGACGGCTTCAGCGACAAGCCCCATGGCTGCGCATCGCCTGAGCCCGAGGCAACAGAGCCTGAGAGTGGTCTTACAACTGAGGATGGACAGTATGATGGATGGGATGATCAACAATCTGCAGGTGGGAGCAGTAACTGGAATTCTCGTGCAAATCGCTCTTTTGGTCTGGCAGATATTCCAGAATGGACTGGGAAGCCTTCATTACCTTATGAAGATCCAGATATGCTGAGATTTCTTGGAGAGCCTATTTTAACTCCAAAAAACAATGAGGTCTTTGATGATACTATTGGTAAGGGCAGGCCAGACAAGTGCAACTGTGAAGTCCCAGGTTCCACTTCTTGTGTCAGATTTCATGTGGCAGAGAAAAAGACCGAGCTGAAGCGTGAAATGGGCTCATCATACTATGCAATGAAGTTTGATGAAATTGGACAGGATGCAGCATTAACATGGCAAAAGGATGAAGAAAAGAAGTTTGAGACCATTGTCCAGCAGAATCTGCCTTCATCTAAGTACAATTTCTGGGACAAGCTGCGTGCCGCCTTCCGTTACAAAGGTGAACGTGCCCTTGTGAGTTACTACAACAATGTTTTCCAGCCGCGCAGAAGAGCCTTCCAGAATCGAGTAGCTCAACATGCTAATGGTGTAGATAGTGATGATGACTCAATTGAACCTGCCTTCCTACGCCTTCGTCAAGACGGTGGTAAGAGTAGATCCAGGTCTTCTGCTTCCTCTAGGAACCAAAATCAGTCTTAGGGTGATAGTCTTCTATAAGTAACTGGTGGCTCCAGTTCAGCTTCACCTGGAGCTCAAGACTCAAAAGGTTCATTTATTTTTATCTTCACCAATTGGTTACTGGACTGGAGACGGTAAGTGAGCTTCAATTGGGAATCTCACTGAGACTTGG TGGTGGTTTTTGTGAATA CCTCTGTGTGGCGCGTTGCCCGTTTACCTTAAAATCTCAATGCAACTG ] [+] EMBL CA767168 [ GGATGATCAACAATCTGCAGGTGGGAGCAGTAACTGGAATTCTCGTGCAAATCGCTCTTTTGGTCTGGCAGATATTCCAGAATGGACTGGGAAGCCTTCATTACCTTATGAAGATCCAGATATGCTGAGATTTCTTGGAGAGCCTATTTTAACTCCAAAAAACAATGAGGTCTTTGATGATACTATTGGTAAGGGCAGGCCAGACAAGTGCAACTGTGAAGTCCCAGGTTCCACTTCTTGTGTCAGATTTCATGTGGCAGAGAAAAAGACCGAGCTGAAGCGTGAAATGGGCTCATCATACTATGCAATGAAGTTTGATGAAATTGGACAGGATGCAGCATTAACATGGCAAAAGGATGAAGAAAAGAAGTTTGAGACCATTGTCCAGCAGAATCTGCCTTCATCTAAGTACAATTTCTGGGTCAAGCTGCGCGCCGCCTTCCGTTACAAAGGTGAACGTGCCCTTGTGAGTTACTACAACAATGTTTTCCAGCCGCGCAGAAGAGCCTTCCAGAATCGAGTAGCTCAACATGCTAATGGTGTAGATAGTGATGATGACTCAATTGAACCTGCCTTCCTACGCCTTCGTCAAGACGGTGGTAAGAGTAGATCCAGGTCTTCTGCTTCCTCTAGGAACCAAAATCAGTCTTANGGTGATAGTCTTCTATAAGTAACTGGTGGCTNCAGNTCAGCTTCACCTGGAGCTCAAGACTCAAAAGGGTCATTTATTTTTATCTTCACCAANTGGNTACTGGACTGGAGACGGTAAGTGAGCTTCAATTGGGAATCTCACTGAGACTTGGNGGGGGGTTTTTGGGAATACCCTCTGNGNGGCGCGTTGNCCGGTTACCNTNAAATCTCAANGCAACTGGGGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5238#0 CCAAATTTTTTTCCCTCTCTTCTCCCAACAACACACCATCGAGCAAAGCAAAGGCGAGAG 60 consensus_5238#1 ------------------------------------------------------------ consensus_5238#0 GAGGAGAAGACGAGGAGTTTTCTCCCAATCCTGAGGGCTTGCAAGCAAAAATGGCCCCCC 120 consensus_5238#1 -----------------------------------------------------GTTGATG 7 * consensus_5238#0 TCCCAACCCCACCACCACCATCCGCCCCTTCCTCCGCGCCCCCTTTCAAATCCAACGCCT 180 consensus_5238#1 TTCCGCCGCCAG-ATGTTCGTCGACGACGGCTTCAGCGACAAGCCCCATGGCTG-CGCAT 65 * ** * *** * * ** * * * ** *** * ** * *** * consensus_5238#0 CGAGCTCTCGCCCCAACCGCGCGCCGCCCGAGGGCGCGCCCACCTCGCCGGCGGCGGCCA 240 consensus_5238#1 CG---CCTGAGCCCGAGGCAACAGAGCCTGAGAGTGGTCTTAC--AACTGAGGATGGACA 120 ** ** *** * * *** *** * * * ** * * * ** ** consensus_5238#0 CCAGGCCGCCACCGTTCGCCATGGTCCCGGCGGTGTCCGAGGCCGTCCTCGCGGTGTTCG 300 consensus_5238#1 GTATGATGGATGGGATGATCAACAATCTGCAGGTG---GGAGCAGTAACTGGAATTCTCG 177 * * * * * ** * * **** * ** ** * * *** consensus_5238#0 ACGTCTCCACCACGCTCCGCTCGCAGGGGTACCTCGCCGGGCAGGAGCTGCCCAGCATCA 360 consensus_5238#1 TGCAAATCGCTCTTTTGGTCTGGCAGATATTCCAGAATGGACTGGGA--AGCCTTCATTA 235 * * * ** **** * ** ** * ** ** *** * consensus_5238#0 CCCTCCCCGAGGACCGCGCCCCGGAGGTGTTCGAGCGGCTGCTCGGGTCCTTCCTCGCGC 420 consensus_5238#1 CCTTAT--GAAGATC------CAGATATGCTGAGATTTCTTGGAGAGCCTATTTTAAC-- 285 ** * ** ** * * ** ** * ** * * * * * * consensus_5238#0 AGTCGCATGGGCCCGGCGTGCTCCCGCCGCGCCCCATGCCTCCCCTGCTCGGGGACGGCA 480 consensus_5238#1 --TCCAAAAAACAATGAGGTCTTTGATGATACTATTGGTAAGGGCAGGCCAGACA-AGTG 342 ** * * * * ** * * * * * * * * consensus_5238#0 CCCCCGTGGGGCTGCTCCGCCTGTACCTCGCCGTCAGGG--CGTGCGGCGGGTTCGAGGC 538 consensus_5238#1 CAACTGTGAAGTCCCAGGTTCCACTTCTTGT-GTCAGATTTCATGTGGCAGA---GAAAA 398 * * *** * * * ** * ***** * ** *** * ** consensus_5238#0 CGTGCGTTCGTGGGCGGCCGCCGCCGAGATGGCCGGCCTCAACCCCGCCATGGACGTCCC 598 consensus_5238#1 AGACCGAGCTGAAGCG--------TGAAATGGGCTCATCATACTATGCAATGAAGTT--- 447 * ** * *** ** **** * ** ** *** * * consensus_5238#0 CATCATGCTGGTGTACCACAAGTACCTCTGCCCCCTGGAGGCGAGCTTCCTCAGGGCCCA 658 consensus_5238#1 --TGATGAAATTGGACAGGATGCAGCATTAACATGGCAAAAGGA------TGAAGAAAAG 499 * *** ** ** * * * * * * * ** * * * consensus_5238#0 GAAGCTGAGGGAGGAGGCCGGGAGCAGCGGCGGGAGCGCCAAGAAGGGCAAGTTCCTCGC 718 consensus_5238#1 AAGTTTGAGACCATTGTCCAGCAGAATCTGC-----CTTCATCTAAGTACAATTTCTGGG 554 * **** * ** * ** * * ** * ** * * * ** ** * consensus_5238#0 GCCGGCGGCCAGGGACGCCGAGGGCGTCGAGGAGGTGCTGGACCTGAAGCGCAAGAGGGA 778 consensus_5238#1 ACAAGCTGC--GTGCCGCCTTCCGTTACAAAGGTGAACGTGCCCTTGTGAGTTACTACAA 612 * ** ** * * **** * * * * * * * *** * * * * consensus_5238#0 GAACCTCGTGGGGATGCTCAACTGGGTGCGCCAGGTGGCGAAGAAGCCAGATCGGCGTCG 838 consensus_5238#1 CAATGTTTTCCAGCCGCGCAGAAGAGCCTTCCAG------AATCGAGTAGCTCAACATGC 666 ** * * * ** ** * * **** ** ** ** * * consensus_5238#0 CTCCGGCAGGAACGCCGCCGACAACCACCTCTCCATGGCGTTGATGTTCCGCCGCCAGAT 898 consensus_5238#1 TAATGGTGTAGATAGTGATGATGA------CTCAATTGAACCTGCCTTCCTACGCC---- 716 ** * * ** * *** ** * **** **** consensus_5238#0 GTTCGTCGACGACGGCTTCAGCGACAAGCCCCATGGCTGCGCATCGCCTGAGCCCGAGGC 958 consensus_5238#1 -TTCGTCAA-GACGGTGGTAAGAGTAGATCCAGGTCTTCTGCTTCCTCTAGGAACCAA-- 772 ****** * ***** * * ** * ** ** ** * * * consensus_5238#0 AACAGAGCCTGAGGTGAT-GTGACAATCAAGCAGAAAGAGGT---AAACAAGA---AACT 1011 consensus_5238#1 AATCAGTCTTAGGGTGATAGTCTTCTATAAGTAACTGGTGGCTCCAGTTCAGCTTCACCT 832 ** * * ****** ** *** * * ** * ** * ** consensus_5238#0 ACATTACAAAACTTGGAATCGCAATTGTGATCTTGACATGAGAACAAGGATGCGATTTTA 1071 consensus_5238#1 GGAGCTCAAGACTCAAAAGGTTCATT-TATTTTTATCTTCACCAATTGGTTACTGGACTG 891 * *** *** ** *** * * ** * * * * ** * * * consensus_5238#0 TTTCTGATGCAAGAACTTTAGTCAATGTCTATTTTA-TGAGACTCGGTC-TATTGCACTT 1129 consensus_5238#1 GAGACGGTAAGTGAGCTTCAAT---TGGGAATCTCACTGAGACTTGGTGGTGGTTTTTGT 948 * * ** *** * * ** ** * * ******* *** * * * consensus_5238#0 GATTCCATGGATGTTTTACCGAATCTTGTTGTTTGAAATTTTGGAATGAACTGT------ 1183 consensus_5238#1 GAATACCTCTGTGTGGCGCGTTGCCCGTTTACCTTAAAATCTCAATGCAACTGGGGTTGA 1008 ** * * * *** * * ** * *** * * * ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||