|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 869 fasta sequence
[TCAAAATTCGGAGGGAGGAATCCAAATCGAATCGAATCGAATCGAAGAAGCTTGGGGGGATATTCTTGATTTGATTTGTTGTTGGAAGAGAAGCAAATCCAATGGCGATTGCATCGGGGG-CGGCTTTCTCGGTGAGGCCTTCGCCGGCGGCGGCGAGGCCGTGCGTCGCGGCGTCCGCGTCGGCCGCCGGCGCGGCGAGGTTCCGCGGCGACGGGAGCGGTGGCGGAGGCGGAGGCGGAGGCGGCGGGAAGTGGTGGGCGCCGCTGCTGGGGTGGTCGGGGCAGCCCGACTACATCGACGCGCAGCCGGCGGCGCGGGAGGAGGCGCGGCCGAATCCGATGGCGGCGGCGGAGCAGCGTGGCGGCGGCGGGAAGAGGTTCGGCGTGCTGACGGAGGAGAAGGCGCGGCAGCTGCGCGCACGGATGATGGAGACGGAGAGCTTCCACGACTGCATGTACCACTCCGCCATCGCCTCCCGCCTCGCCTCCGCCGCCCCCGCCGACGACGGCAAGCACTGAGCCGCCGCCGCCATCCATGGCTCCCCGCCTCTGCCCATACCGCGCCGCCATCCAACGCCGATGATGATGATGATGTTGTTGTGTCGTTTTGGTATCAATAACGTCGCCGCCGCCGACGCCGTCAATGGCCGGAGAAGTATTAGTATGAGGCCTCGACGGCGGCGTGCTTGTCGGATTGATTCCATGGAGATGGGATGATTTCATCCTAATATCTCCATTTCTGTAACTCATAGTATAGCAGCTAATGCATCTAAACGTTGTTGTAACAAGAAATTTAATCTGGTTTCTTCAACCATGGCTTCTTCTGTACTATACATCACAATCACTCTGGAATTTTCAGAAATTTCAGTG]
[+] EMBL AK071289 [TCAAAATTCGGAGGGAGGAATCCAAATCGAATCGAATCGAATCGAAGAAGCTTGGGGGGATATTCTTGATTTGATTTGTTGTTGGAAGAGAAGCAAATCCAATGGCGATTGCATCGGGGG CGGCTTTCTCGGTGAGGCCTTCGCCGGCGGCGGCGAGGCCGTGCGTCGCGGCGTCCGCGTCGGCCGCCGGCGCGGCGAGGTTCCGCGGCGACGGGAGCGGTGGCGGAGGCGGAGGCGGAGGCGGCGGGAAGTGGTGGGCGCCGCTGCTGGGGTGGTCGGGGCAGCCCGACTACATCGACGCGCAGCCGGCGGCGCGGGAGGAGGCGCGGCCGAATCCGATGGCGGCGGCGGAGCAGCGTGGCGGCGGCGGGAAGAGGTTCGGCGTGCTGACGGAGGAGAAGGCGCGGCAGCTGCGCGCACGGATGATGGAGACGGAGAGCTTCCACGACTGCATGTACCACTCCGCCATCGCCTCCCGCCTCGCCTCCGCCGCCCCCGCCGACGACGGCAAGCACTGAGCCGCCGCCGCCATCCATGGCTCCCCGCCTCTGCCCATACCGCGCCGCCATCCAACGCCGATGATGATGATGATGTTGTTGTGTCGTTTTGGTATCAATAACGTCGCCGCCGCCGACGCCGTCAATGGCCGGAGAAGTATTAGTATGAGGCCTCGACGGCGGCGTGCTTGTCGGATTGATTCCATGGAGATGGGATGATTTCATCCTAATATCTCCATTTCTGTAACTCATAGTATAGCAGCTAATGCATCTAAACGTTGTTGTAACAAGAAATTTAATCTGGTTTCTTCAACCATGGCTTCTTCTGTACTATACATCACAATCACTCTGGAATTTTCAGAAATTTCAGTG]
[+] EMBL AU173097 [ GAGGGAGGAATCCAAATCGAATCGAATCGAATCGAAGAAGCTTGGGGGGATATTCTTGATTTGATTTGTTGTTGGAAGAGAAGCAAATCCAATGGCGATTGCATCGGGGGCCGGCTTTCTCGGTGAGGCCTTCGCCGGCGGCGGCGAGGCCGTGCGTCGCGGCGTCCGCGTCGGCCGCCGGCGCGGCGAGGTTCCGCGGCGACGGGAGCGGTGGCGGAGGCGGAGGCGGAGGCGGCGGNAAGTGGTGGGCCCCGCTGCTGGGGTGGTCGGGGCAGCCCGACTACATCGACGCGCAGCC ]
consensusID : consensus_5239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[GAATCCCAAATCGAATCGAATCGAATCGAAGAAGCTTGGGGGGATATTCTTGATTTGATTTGTTGTTGGAAGAGAAGCAAATCCAATGGCGATTGCATCGGGGCGGCTTTCTCGGTGAGGCCTTCGCCGGCGNCGGCGAGGCCGTGCGTCGCGGCGTCCGCGTCGGGCCGCCGGCGCGGCGAGGTTCCGCGGCGACGGGAGCGGTGGCGNAGGCGGAGGCGGAGGCGGCGGGAAGTGGTGGGCGCCGCTGCTGGGGTGGTCGGGGCAGCCCGACTACATCGACGCGCAGCCGGCGGCGCGGGAGGAGGCGCCGCCATCCATGGCTCCCCGCCTCTGCCCATACCGCGCCGCCATCCAACGCCGATGATGATGATGATGTTGTTGTGTCGTTTTGGTATCAATAACGTCGCCGCCGCCGACGCCGTCAATGGCCGGAGAAGTATTAGTATGAGGCCTCGACGGCGGCGTGCTTGTCGGATTGATTCCATGGAGATGGGATGATTTCATCCTAATATCTCCATTTCTGTAACTCATAGTATAGCAGCTAATGCATCTAAACGTTGTTGTAACAAGAAATTTAATCTGGTTTCTTCAACCATGGCTTCTTCTGTACTATACATCACAATCACTCTGAAATTTTCAGAAATTTCAGTGTTCATTTTTTATCTCTGAAAGTTTCGAGAATTCAAAAAA]
[+] EMBL AU101612 [GAATCCCAAATCGAATCGAATCGAATCGAAGAAGCTTGGGGGGATATTCTTGATTTGATTTGTTGTTGGAAGAGAAGCAAATCCAATGGCGATTGCATCGGGGCGGCTTTCTCGGTGAGGCCTTCGCCGGCGNCGGCGAGGCCGTGCGTCGCGGCGTCCGCGTCGGGCCGCCGGCGCGGCGAGGTTCCGCGGCGACGGGAGCGGTGGCGNAGGCGGAGGCGGAGGCGGCGGGAAGTGGTGGGCGCCGCTGCTGGGGTGGTCGGGGCAGCCCGACTACATCGACGCGCAGCCGGCGGCGCGGGAGGAGGCGCCGCCATCCATGGCTCCCCGCCTCTGCCCATACCGCGCCGCCATCCAACGCCGATGATGATGATGATGTTGTTGTGTCGTTTTGGTATCAATAACGTCGCCGCCGCCGACGCCGTCAATGGCCGGAGAAGTATTAGTATGAGGCCTCGACGGCGGCGTGCTTGTCGGATTGATTCCATGGAGATGGGATGATTTCATCCTAATATCTCCATTTCTGTAACTCATAGTATAGCAGCTAATGCATCTAAACGTTGTTGTAACAAGAAATTTAATCTGGTTTCTTCAACCATGGCTTCTTCTGTACTATACATCACAATCACTCTGAAATTTTCAGAAATTTCAGTGTTCATTTTTTATCTCTGAAAGTTTCGAGAATTCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5239#0 TCAAAATTCGGAGGGAGGAATCCAAATCGAATCGAATCGAATCGAAGAAGCTTGGGGGGA 60
consensus_5239#1 ----------------GAATCCCAAATCGAATCGAATCGAATCGAAGAAGCTTGGGGGGA 44
* * ***************************************
consensus_5239#0 TATTCTTGATTTGATTTGTTGTTGGAAGAGAAGCAAATCCAATGGCGATTGCATCGGGGG 120
consensus_5239#1 TATTCTTGATTTGATTTGTTGTTGGAAGAGAAGCAAATCCAATGGCGATTGCATCGGGG- 103
***********************************************************
consensus_5239#0 CGGCTTTCTCGGTGAGGCCTTCGCCGGCGGCGGCGAGGCCGTGCGTCGCGGCGTCCGCGT 180
consensus_5239#1 CGGCTTTCTCGGTGAGGCCTTCGCCGGCGNCGGCGAGGCCGTGCGTCGCGGCGTCCGCGT 163
***************************** ******************************
consensus_5239#0 CGG-CCGCCGGCGCGGCGAGGTTCCGCGGCGACGGGAGCGGTGGCGGAGGCGGAGGCGGA 239
consensus_5239#1 CGGGCCGCCGGCGCGGCGAGGTTCCGCGGCGACGGGAGCGGTGGCGNAGGCGGAGGCGGA 223
*** ****************************************** *************
consensus_5239#0 GGCGGCGGGAAGTGGTGGGCGCCGCTGCTGGGGTGGTCGGGGCAGCCCGACTACATCGAC 299
consensus_5239#1 GGCGGCGGGAAGTGGTGGGCGCCGCTGCTGGGGTGGTCGGGGCAGCCCGACTACATCGAC 283
************************************************************
consensus_5239#0 GCGCAGCCGGCGGCGCGGGAGGAGGCGCGGCCGAATCCGATGGCGGCGGCGGAGCAGCGT 359
consensus_5239#1 GCGCAGCCGGCGGCGCGGGAGGAGGCGC-------------------------------- 311
****************************
consensus_5239#0 GGCGGCGGCGGGAAGAGGTTCGGCGTGCTGACGGAGGAGAAGGCGCGGCAGCTGCGCGCA 419
consensus_5239#1 ------------------------------------------------------------
consensus_5239#0 CGGATGATGGAGACGGAGAGCTTCCACGACTGCATGTACCACTCCGCCATCGCCTCCCGC 479
consensus_5239#1 ------------------------------------------------------------
consensus_5239#0 CTCGCCTCCGCCGCCCCCGCCGACGACGGCAAGCACTGAGCCGCCGCCGCCATCCATGGC 539
consensus_5239#1 -----------------------------------------------CGCCATCCATGGC 324
*************
consensus_5239#0 TCCCCGCCTCTGCCCATACCGCGCCGCCATCCAACGCCGATGATGATGATGATGTTGTTG 599
consensus_5239#1 TCCCCGCCTCTGCCCATACCGCGCCGCCATCCAACGCCGATGATGATGATGATGTTGTTG 384
************************************************************
consensus_5239#0 TGTCGTTTTGGTATCAATAACGTCGCCGCCGCCGACGCCGTCAATGGCCGGAGAAGTATT 659
consensus_5239#1 TGTCGTTTTGGTATCAATAACGTCGCCGCCGCCGACGCCGTCAATGGCCGGAGAAGTATT 444
************************************************************
consensus_5239#0 AGTATGAGGCCTCGACGGCGGCGTGCTTGTCGGATTGATTCCATGGAGATGGGATGATTT 719
consensus_5239#1 AGTATGAGGCCTCGACGGCGGCGTGCTTGTCGGATTGATTCCATGGAGATGGGATGATTT 504
************************************************************
consensus_5239#0 CATCCTAATATCTCCATTTCTGTAACTCATAGTATAGCAGCTAATGCATCTAAACGTTGT 779
consensus_5239#1 CATCCTAATATCTCCATTTCTGTAACTCATAGTATAGCAGCTAATGCATCTAAACGTTGT 564
************************************************************
consensus_5239#0 TGTAACAAGAAATTTAATCTGGTTTCTTCAACCATGGCTTCTTCTGTACTATACATCACA 839
consensus_5239#1 TGTAACAAGAAATTTAATCTGGTTTCTTCAACCATGGCTTCTTCTGTACTATACATCACA 624
************************************************************
consensus_5239#0 ATCACTCTGGAATTTTCAGAAATTTCAGTG------------------------------ 869
consensus_5239#1 ATCACTCTGAAATTTTCAGAAATTTCAGTGTTCATTTTTTATCTCTGAAAGTTTCGAGAA 684
********* ********************
consensus_5239#0 ---------
consensus_5239#1 TTCAAAAAA 693
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||