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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1851 fasta sequence
[CCTCTTCCCAGACTCCCATGGCAGCCACGCCCACCACGTCCGCCTCCGCGGCGGCCACCACTCGCCTCTTCCTACCTACTCGCCGCCACCTCCATGAAACCGCTTCCGTGCCTGCCCCTTCGCGCACCATCGCCCGCCGCTACTCCGGCGGCGTCCGCTCTCTCGGGCCACCGCGCGCCGCCGCGGGCGAGCTTGGCGGCGGGGCCGGCGGAACCATCACCGGGAAGGGCGCCGTCCGCATAGTCTCCATAGTAGGCGACGGGAGCATCAGCCCGCTGAAGGACACGCCATGGGAGGAGGTTATGCGCCACACGGCTAATAGGATGAAGTGGGTTGACGAAGGATTTGAAATGCTTGTCTTCACAGACAAGTCAATTGGCCATGATGAACTTAGGAAAGAGCTGGCACAGTGTGATATGCTAGTCAATGTTGCAATAACGAGTCAGGAGACTGTTCAGTGGCTTATAAATAACAGTGAGGACATTCCCAATATAATCTGCTTTCAATCATCTCCAACCTTAGAAAACAAGTTAGGTGGCAGGTATGTTCAATACACTGGACGTCAGGACATGTTTTGCAAGCTAACAAATATTGGAGAAACAGGTGGCATGAAGGAATCTGCTGAAGTCCTTAAGGCTGTATCTAATGCCTGGGAAAGGCATAATTCAGATGACATTAGATTTTGCTTACTTGTTGTGGTTAATGCGTACATAAGACCTGTTGATATGCTGCAAAACCTTAGGGCAAAAGGTCTGTCTACCCTAAGCTGTATGATAAGAAATTGTGGTCCTCAGATACTGAATTGTCTGTTCGATCCCAACTGTAGGAAAGCCCTTCAGTGTTTAAATTCATGTTCTCCAACTGATCAAGTTTGCAACTATCGCTGCATTGCGTCGTATGAGAGTCCGCATCTGGAGGCCTTTTCTTTATGTGTTTTGCAGAAGAACAATTGTCTTGATCTCAATGCCGAGATCCCCAGTAAGCCCTCTGTACCCCCACTAACCATGTTCAGAGAACAAATGCTAAGCCATGAACTTGCAGAAGACATGTTTGTTGGATGGTTGGACAACTTGGAATGGAGTTGGAGAGTTGTAGCTGGACAAAATCCAGCATATGATCAATTCCCATGTCAGTATCAATTATTTTACAGGGGAAAAGCTAAAGGTTCATTTTGGTATGAGCCAATTTTTCAAGTCAGAACCCTGGAAGGGGAACTGGTTTGGAGGCGCAGAAAGTACCGAGTAAGAAGAGCTCTCATCCCTGGTACATTTTACTTCAGTGTGCTGGATAATGGTGTGGTTTCAAAGGAGTTTTGGACAATCGTTGATGTTTCAGATGATTTCAGCTGGGGTCTGTTCCATTATCACGGAGCCGCTCAGGCCGCTGGACTAGCATACACTGGAGCAGTGCTCGTTAGCCCAGATGGCTCTTGTCCAGATTTGGATGACCCAAGACTGGCATCTGCTTTAGATAAGTGTGGGATCAAGAAGTGGGAGCTTTATATGGTTGATAACTGTTCCTGCACTGGTGCACCTTTGGGAACTCCTGGAGATGCAAAGCTGCATTATCAGATTGCTCCTGGAAAAGAATCAGGTATTTTGCAGACAGGGTGATGTGTTCTAACGGCACAGAAGGTTCCCAGATGACTTGCACGGTTGCACCTCTAAGTCAGGCAGTGTGGACTGTGGTCTGTGGATACTGCGGACTTGATCCAGTGCAGGAATTGCTTGCACTGTTGCACCCACTAGACTACAAATATGTAAGAATAACATTCAGGTATCGCTGAAAAGAGTAATTATGTAAAATGAGCGGTTCTTTATCTTATATAGTTATCATCTAATGTCATGCCTT]
[+] EMBL AK066768 [CCTCTTCCCAGACTCCCATGGCAGCCACGCCCACCACGTCCGCCTCCGCGGCGGCCACCACTCGCCTCTTCCTACCTACTCGCCGCCACCTCCATGAAACCGCTTCCGTGCCTGCCCCTTCGCGCACCATCGCCCGCCGCTACTCCGGCGGCGTCCGCTCTCTCGGGCCACCGCGCGCCGCCGCGGGCGAGCTTGGCGGCGGGGCCGGCGGAACCATCACCGGGAAGGGCGCCGTCCGCATAGTCTCCATAGTAGGCGACGGGAGCATCAGCCCGCTGAAGGACACGCCATGGGAGGAGGTTATGCGCCACACGGCTAATAGGATGAAGTGGGTTGACGAAGGATTTGAAATGCTTGTCTTCACAGACAAGTCAATTGGCCATGATGAACTTAGGAAAGAGCTGGCACAGTGTGATATGCTAGTCAATGTTGCAATAACGAGTCAGGAGACTGTTCAGTGGCTTATAAATAACAGTGAGGACATTCCCAATATAATCTGCTTTCAATCATCTCCAACCTTAGAAAACAAGTTAGGTGGCAGGTATGTTCAATACACTGGACGTCAGGACATGTTTTGCAAGCTAACAAATATTGGAGAAACAGGTGGCATGAAGGAATCTGCTGAAGTCCTTAAGGCTGTATCTAATGCCTGGGAAAGGCATAATTCAGATGACATTAGATTTTGCTTACTTGTTGTGGTTAATGCGTACATAAGACCTGTTGATATGCTGCAAAACCTTAGGGCAAAAGGTCTGTCTACCCTAAGCTGTATGATAAGAAATTGTGGTCCTCAGATACTGAATTGTCTGTTCGATCCCAACTGTAGGAAAGCCCTTCAGTGTTTAAATTCATGTTCTCCAACTGATCAAGTTTGCAACTATCGCTGCATTGCGTCGTATGAGAGTCCGCATCTGGAGGCCTTTTCTTTATGTGTTTTGCAGAAGAACAATTGTCTTGATCTCAATGCCGAGATCCCCAGTAAGCCCTCTGTACCCCCACTAACCATGTTCAGAGAACAAATGCTAAGCCATGAACTTGCAGAAGACATGTTTGTTGGATGGTTGGACAACTTGGAATGGAGTTGGAGAGTTGTAGCTGGACAAAATCCAGCATATGATCAATTCCCATGTCAGTATCAATTATTTTACAGGGGAAAAGCTAAAGGTTCATTTTGGTATGAGCCAATTTTTCAAGTCAGAACCCTGGAAGGGGAACTGGTTTGGAGGCGCAGAAAGTACCGAGTAAGAAGAGCTCTCATCCCTGGTACATTTTACTTCAGTGTGCTGGATAATGGTGTGGTTTCAAAGGAGTTTTGGACAATCGTTGATGTTTCAGATGATTTCAGCTGGGGTCTGTTCCATTATCACGGAGCCGCTCAGGCCGCTGGACTAGCATACACTGGAGCAGTGCTCGTTAGCCCAGATGGCTCTTGTCCAGATTTGGATGACCCAAGACTGGCATCTGCTTTAGATAAGTGTGGGATCAAGAAGTGGGAGCTTTATATGGTTGATAACTGTTCCTGCACTGGTGCACCTTTGGGAACTCCTGGAGATGCAAAGCTGCATTATCAGATTGCTCCTGGAAAAGAATCAGGTATTTTGCAGACAGGGTGATGTGTTCTAACGGCACAGAAGGTTCCCAGATGACTTGCACGGTTGCACCTCTAAGTCAGGCAGTGTGGACTGTGGTCTGTGGATACTGCGGACTTGATCCAGTGCAGGAATTGCTTGCACTGTTGCACCCACTAGACTACAAATATGTAAGAATAACATTCAGGTATCGCTGAAAAGAGTAATTATGTAAAATGAGCGGTTCTTTATCTTATATAGTTATCATCTAATGTCATGCCTT]
consensusID : consensus_5244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[CCACCACTCGCCTCTTCCTACCTACTCGCCGCCACCTCCATGAAACCGCTTCCGTGCCTGCCCCTTCGCGCACCATCGCCCGCCGCTACTCCGGCGGCGTCCGCTCTCTCGGGCCACCGCGCGCCGCCGCGGGCGAGCTTGGCGGCGGGGCCGGCGGAACCATCACCGGGAAGGGCGCCGTCCGCATAGTCTCCATAGTAGGCGACGGGAGCATCAGCCCGCTGAAGGACACGCCATGGGAGGAGGTTATGCGCCACACGGTATGCTTCCGCTCTGAGCTCTGAACCTAGCACCGATTCACCGCTATCAAATGCTAGTGCGGAGTCGCAGTGCAAAGGAGAACTCGACAGTATTGCAATAAGCCGATTCGGAATATGCTGATAACTGAAGAACTTCTATAGATAGAATGTTGTAACGGCAAAGCACATGCAAATACGCGATTGGTCAATTGCACACTCACACAGAACCATTTCGCACGCTCACTTGGAGAACTAGTTGTAGAAGTATTCAAGTATATGTGATTATATGGGCACGAACATTCTANATTTCTGGTACCCCNAAATGTGTTAGTACTTAGTACTTGATTATNATTTTGTATCGCTT]
[+] EMBL CA754388 [CCACCACTCGCCTCTTCCTACCTACTCGCCGCCACCTCCATGAAACCGCTTCCGTGCCTGCCCCTTCGCGCACCATCGCCCGCCGCTACTCCGGCGGCGTCCGCTCTCTCGGGCCACCGCGCGCCGCCGCGGGCGAGCTTGGCGGCGGGGCCGGCGGAACCATCACCGGGAAGGGCGCCGTCCGCATAGTCTCCATAGTAGGCGACGGGAGCATCAGCCCGCTGAAGGACACGCCATGGGAGGAGGTTATGCGCCACACGGTATGCTTCCGCTCTGAGCTCTGAACCTAGCACCGATTCACCGCTATCAAATGCTAGTGCGGAGTCGCAGTGCAAAGGAGAACTCGACAGTATTGCAATAAGCCGATTCGGAATATGCTGATAACTGAAGAACTTCTATAGATAGAATGTTGTAACGGCAAAGCACATGCAAATACGCGATTGGTCAATTGCACACTCACACAGAACCATTTCGCACGCTCACTTGGAGAACTAGTTGTAGAAGTATTCAAGTATATGTGATTATATGGGCACGAACATTCTANATTTCTGGTACCCCNAAATGTGTTAGTACTTAGTACTTGATTATNATTTTGTATCGCTT]
consensusID : consensus_5244#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[CACATCTTGATGTTTCAGATGATTTCAGCTGGGGTCTGTTCCATTATCACGGAGCCGCTCAGCCGCTGGACTAGCATACACTGGAGCAGTGCTCGTTAGCCCAGATGGCTCTTGTCCAGATTTGGATGACCCAAGACTGGCATCTGCTTTAGATAAGTGTGGGATCAAGAAGTGGGAGCTTTATATGGTTGATAACTGTTCCTGCACTGGTGCACCTTTGGGAACTCCTGGAGATGCAAGCTGCATTATCAGATTGCTCCTGGAAAAGAATCAGGTATTTTGCAGACAGGGTGATGTGTTCTAACGGCACAGAAGGTTCCCAGATGACTTGCACGGTTGCACCTCTAAGTCAGGCACGTGTGGACTGTGGTCTGTGGATACTGCGGACTTGATCCAGTGCAGGAATTGCTTGCACTGTTGCACCCACTAGACTACAATATGTAAGAATAACATTCAGGTATCGCTGAAAAGAGTAATTATGTAAAATGAGCGGTTCTAATGTCATGCCTTTTTTACTGTCAAAAAA]
[+] EMBL BI801016 [CACATCTTGATGTTTCAGATGATTTCAGCTGGGGTCTGTTCCATTATCACGGAGCCGCTCAGCCGCTGGACTAGCATACACTGGAGCAGTGCTCGTTAGCCCAGATGGCTCTTGTCCAGATTTGGATGACCCAAGACTGGCATCTGCTTTAGATAAGTGTGGGATCAAGAAGTGGGAGCTTTATATGGTTGATAACTGTTCCTGCACTGGTGCACCTTTGGGAACTCCTGGAGATGCAAGCTGCATTATCAGATTGCTCCTGGAAAAGAATCAGGTATTTTGCAGACAGGGTGATGTGTTCTAACGGCACAGAAGGTTCCCAGATGACTTGCACGGTTGCACCTCTAAGTCAGGCACGTGTGGACTGTGGTCTGTGGATACTGCGGACTTGATCCAGTGCAGGAATTGCTTGCACTGTTGCACCCACTAGACTACAATATGTAAGAATAACATTCAGGTATCGCTGAAAAGAGTAATTATGTAAAATGAGCGGTTCTAATGTCATGCCTTTTTTACTGTCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5244#0 CCTCTTCCCAGACTCCCATGGCAGCCACGCCCACCACGTCCGCCTCCGCGGCGGCCACCA 60
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 CTCGCCTCTTCCTACCTACTCGCCGCCACCTCCATGAAACCGCTTCCGTGCCTGCCCCTT 120
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 CGCGCACCATCGCCCGCCGCTACTCCGGCGGCGTCCGCTCTCTCGGGCCACCGCGCGCCG 180
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 CCGCGGGCGAGCTTGGCGGCGGGGCCGGCGGAACCATCACCGGGAAGGGCGCCGTCCGCA 240
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 TAGTCTCCATAGTAGGCGACGGGAGCATCAGCCCGCTGAAGGACACGCCATGGGAGGAGG 300
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 TTATGCGCCACACGGCTAATAGGATGAAGTGGGTTGACGAAGGATTTGAAATGCTTGTCT 360
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 TCACAGACAAGTCAATTGGCCATGATGAACTTAGGAAAGAGCTGGCACAGTGTGATATGC 420
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 TAGTCAATGTTGCAATAACGAGTCAGGAGACTGTTCAGTGGCTTATAAATAACAGTGAGG 480
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 ACATTCCCAATATAATCTGCTTTCAATCATCTCCAACCTTAGAAAACAAGTTAGGTGGCA 540
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 GGTATGTTCAATACACTGGACGTCAGGACATGTTTTGCAAGCTAACAAATATTGGAGAAA 600
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 CAGGTGGCATGAAGGAATCTGCTGAAGTCCTTAAGGCTGTATCTAATGCCTGGGAAAGGC 660
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 ATAATTCAGATGACATTAGATTTTGCTTACTTGTTGTGGTTAATGCGTACATAAGACCTG 720
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 TTGATATGCTGCAAAACCTTAGGGCAAAAGGTCTGTCTACCCTAAGCTGTATGATAAGAA 780
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 ATTGTGGTCCTCAGATACTGAATTGTCTGTTCGATCCCAACTGTAGGAAAGCCCTTCAGT 840
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 GTTTAAATTCATGTTCTCCAACTGATCAAGTTTGCAACTATCGCTGCATTGCGTCGTATG 900
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 AGAGTCCGCATCTGGAGGCCTTTTCTTTATGTGTTTTGCAGAAGAACAATTGTCTTGATC 960
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 TCAATGCCGAGATCCCCAGTAAGCCCTCTGTACCCCCACTAACCATGTTCAGAGAACAAA 1020
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 TGCTAAGCCATGAACTTGCAGAAGACATGTTTGTTGGATGGTTGGACAACTTGGAATGGA 1080
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 GTTGGAGAGTTGTAGCTGGACAAAATCCAGCATATGATCAATTCCCATGTCAGTATCAAT 1140
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 TATTTTACAGGGGAAAAGCTAAAGGTTCATTTTGGTATGAGCCAATTTTTCAAGTCAGAA 1200
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 CCCTGGAAGGGGAACTGGTTTGGAGGCGCAGAAAGTACCGAGTAAGAAGAGCTCTCATCC 1260
consensus_5244#2 ------------------------------------------------------------
consensus_5244#1 ------------------------------------------------------------
consensus_5244#0 CTGGTACATTTTACTTCAGTGTGCTGGATAATGGTGTGGTTTCAAAGGAGTTTTGGACAA 1320
consensus_5244#2 ---------------------------------------------------------CAC 3
consensus_5244#1 -------------------------------CCACCACTCGCCTCTTCCTACCTACTCGC 29
*
consensus_5244#0 TCGTTGATGTTTCAGATGATTTCAGCTGGGGTCTGTTCCATTATCACGGA--GCCGCTCA 1378
consensus_5244#2 ATCTTGATGTTTCAGATGATTTCAGCTGGGGTCTGTTCCATTATCACGGA--GCCGCTCA 61
consensus_5244#1 CGCCACCTCCATGAAACCGCTTCCGTGCCTGCCCCTTCGCGCACCATCGCCCGCCGCT-A 88
* * * * *** * * * *** * ** * ****** *
consensus_5244#0 GGCCGCTGGACTAGCATACACTGGAGCAGTGCTCGTTAGCCCAGATGGCTCTTGTC-CAG 1437
consensus_5244#2 G-CCGCTGGACTAGCATACACTGGAGCAGTGCTCGTTAGCCCAGATGGCTCTTGTC-CAG 119
consensus_5244#1 CTCCGGCGGCGTCCGCTCTCTCGGGCCACCGCGCGCCGCCGCGGGCGAGCTTGGCGGCGG 148
*** ** * * ** ** ** ** * * * * * * * *
consensus_5244#0 ATTTGGATGACCCAAGACTGGCATCTGC----TTTAGATAAGTGTGGGATCAAGAAGTGG 1493
consensus_5244#2 ATTTGGATGACCCAAGACTGGCATCTGC----TTTAGATAAGTGTGGGATCAAGAAGTGG 175
consensus_5244#1 GGCCGGCGGAACCATCACCGGGAAGGGCGCCGTCCGCATAGTCTCCATAGTAGGCGACGG 208
** ** *** ** ** * ** * *** * * * **
consensus_5244#0 GAGCTTTATATGGTTGATAACTGTTCCT------GCACTGGTGCACCTTTGGGAA--CTC 1545
consensus_5244#2 GAGCTTTATATGGTTGATAACTGTTCCT------GCACTGGTGCACCTTTGGGAA--CTC 227
consensus_5244#1 GAGCATCAGCCCGCTGAAGGACACGCCATGGGAGGAGGTTATGCGCCACACGGTATGCTT 268
**** * * * *** ** * * *** ** ** * **
consensus_5244#0 CTG----GAGATGCAAAGCT-GCATTATCAGATTGCTCCTGGAAAAGAATCAGGTATTTT 1600
consensus_5244#2 CTG----GAGATGCAA-GCT-GCATTATCAGATTGCTCCTGGAAAAGAATCAGGTATTTT 281
consensus_5244#1 CCGCTCTGAGCTCTGAACCTAGCACCGATTCACCGCTATCAAATGCTAGTGCGGAGTCGC 328
* * *** * * ** *** * *** * * * ** *
consensus_5244#0 GCAGACAGGGTGATGTGTTC--TAACGGCACAGAAGGTTCCCAGATGACTTGC--ACGGT 1656
consensus_5244#2 GCAGACAGGGTGATGTGTTC--TAACGGCACAGAAGGTTCCCAGATGACTTGC--ACGGT 337
consensus_5244#1 AGTGCAAAGGAGAACTCGACAGTATTGCAATAAGCCGATTCGGAATATGCTGATAACTGA 388
* * ** ** * * ** * * * * * * ** ** ** *
consensus_5244#0 TGCACCTCTAAGTCAGGCA-GTGTGGACTGTGGTCTGTGGATAC-TGCGGACTTGATCCA 1714
consensus_5244#2 TGCACCTCTAAGTCAGGCACGTGTGGACTGTGGTCTGTGGATAC-TGCGGACTTGATCCA 396
consensus_5244#1 AGAACTTCTATAGATAGAATGTTGTAACGGCAAAGCACATGCAAATACGCGATTGGTCAA 448
* ** **** * * ** ** * * * ** *** ** *
consensus_5244#0 GTGCAGGAATTGCTTGCACTGTTGCACCCACTAGACTACAAATAT-GTAAGAATAACATT 1773
consensus_5244#2 GTGCAGGAATTGCTTGCACTGTTGCACCCACTAGACTACAA-TAT-GTAAGAATAACATT 454
consensus_5244#1 TTGCACACTCACACAGAACCATTTCGCACGCTCACTTGGAGAACTAGTTGTAGAAGTATT 508
**** * ** ** * * * ** * * * ** * * ***
consensus_5244#0 CAGGTAT---CGCTGAAAAGAGTA--ATTATGTAAAATGAGCGGTTCT-----TTATCTT 1823
consensus_5244#2 CAGGTAT---CGCTGAAAAGAGTA--ATTATGTAAAATGAGCGGTTCT-----A-ATGTC 503
consensus_5244#1 CAAGTATATGTGATTATATGGGCACGAACATTCTANATTTCTGGTACCCCNAAATGTGTT 568
** **** * * * * * * * * ** * ** *** * * *
consensus_5244#0 ATATAGTTATCATCTAATGTCATGCCTT------- 1851
consensus_5244#2 ATGCCTTT----TTTACTGTCAAAAAA-------- 526
consensus_5244#1 AGTACTTAGTACTTGATTATNATTTTGTATCGCTT 603
* * * * * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||