These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5248#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence [ATGTTCGCGGCGGCGCGGCGGGGTGGTTCGTCTGCGAGATCAGTACAATCTCCTTCACTCCTGCGATCCGATCGCAAGACGCGATCGGATGTGGATATAATTTGACAGGGATTCAGAGAATTAAGATGAATGGTGCTTTATGGATTCCTATTCTGCCCCCTCCAGTTGTTGATGCTCGTTATCAGGGACTGTGCCTACAGTGTGGCCGCCGCATTAAGGGCCGATCTAACCTCTGTTCCATTTCCTGCAGACTATTGCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGGTGGAATTTTCAGAGTCTGTTGGACAGCCGATCCATCAGCTGGATCAGCTCTGTGGGCAATGCCTCCGGTCCTTTTGTGGTGTTTCCTGTCCGAACCATCTGGTCCACCCACACCCCCAGGGTAATCATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATGGCTGGTTGGTCATAGACCAAGAACAGCTCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAGAGGACGGGCGTCACATGCTTCCTATTAAGCGCCTCCCCGCTGAGCATGGAGATGGGCATGATGGATTAGTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAGGGTGTAATGAGATGTTCAATGGAAATGCTGTGTGTTGCTGCATGAGGTGCTTCCATTTACTGTGAGGATACCAAGTGGATGTGATTAAATAAGTTTAAGAAATACCCCTG] [+] EMBL AK074024 [ATGTTCGCGGCGGCGCGGCGGGGTGGTTCGTCTGCGAGATCAGTACAATCTCCTTCACTCCTGCGATCCGATCGCAAGACGCGATCGGATGTGGATATAATTTGACAGGGATTCAGAGAATTAAGATGAATGGTGCTTTATGGATTCCTATTCTGCCCCCTCCAGTTGTTGATGCTCGTTATCAGGGACTGTGCCTACAGTGTGGCCGCCGCATTAAGGGCCGATCTAACCTCTGTTCCATTTCCTGCAGACTATTGCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGGTGGAATTTTCAGAGTCTGTTGGACAGCCGATCCATCAGCTGGATCAGCTCTGTGGGCAATGCCTCCGGTCCTTTTGTGGTGTTTCCTGTCCGAACCATCTGGTCCACCCACACCCCCAGGGTAATCATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATGGCTGGTTGGTCATAGACCAAGAACAGCTCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAGAGGACGGGCGTCACATGCTTCCTATTAAGCGCCTCCCCGCTGAGCATGGAGATGGGCATGATGGATTAGTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAGGGTGTAATGAGATGTTCAATGGAAATGCTGTGTGTTGCTGCATGAGGTGCTTCCATTTACTGTGAGGATACCAAGTGGATGTGATTAAATAAGTTTAAGAAATACCCCTG] consensusID : consensus_5248#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [GCAGACTATTGCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGGTGGAATTTTCAGAGTCTGTTGGACAGCTGATCCATCAGCTGGATCAGCTCTGTGGGCAATGCCTCCGGTCCTTTTGTGGTGTTTCCTGTCCGAACCTTTTGGTCCACCCACCACCCCCAGGGTAATCATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATGGCTGGTTGGTCATAGACCAAGAACAGCTCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAGAGGACGGGCGTCACATGCTTCCTATTAAGCGCCTCCCCGCTGAGCATGGAGATGGGCATGATGGATTAGTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAGGGTGTAATGAGATGTTCAATGGAAATGCTGTGTGTTGCTGCAAAAAAAAAAAAAAAAAAA] [-] EMBL CF319875 [GCAGACTATTGCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGGTGGAATTTTCAGAGTCTGTTGGACAGCTGATCCATCAGCTGGATCAGCTCTGTGGGCAATGCCTCCGGTCCTTTTGTGGTGTTTCCTGTCCGAACCTTTTGGTCCACCCACCACCCCCAGGGTAATCATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATGGCTGGTTGGTCATAGACCAAGAACAGCTCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAGAGGACGGGCGTCACATGCTTCCTATTAAGCGCCTCCCCGCTGAGCATGGAGATGGGCATGATGGATTAGTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAGGGTGTAATGAGATGTTCAATGGAAATGCTGTGTGTTGCTGCAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5248#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [TTTTAAGAGTAATGCTGTGTTATGCGTTCTTAAGTCCTTGATCCCTAATCCTTGTTGTTTTTGCAGCAGTAGTCTTCCAGGCTACTAGGCAGTGCCCTCAATTTTGGTGATTTTATTTCCTGTTAGCTCTAACATTCCTGTTTATTCACTTCTTATTGACAGTTCTTGACCTTTTCTATGTACAGATCAGTACAATCTCCTTCACTCCTGCGATCCGATCGCAAGACGCGATCGGATGTGGATATAATTTGACAGGGATTCAGAGAATTAAGATGAATGGTGCTTTATGGATTCCTATTCTGCCCCCTCCAGTTGTTGATGCTCGTTATCAGGGACTGTGCCTACAGTGTGGCCGCCGCATTAAGGGCCGATCTAACCTCTGTTC] [+] EMBL CF319874 [TTTTAAGAGTAATGCTGTGTTATGCGTTCTTAAGTCCTTGATCCCTAATCCTTGTTGTTTTTGCAGCAGTAGTCTTCCAGGCTACTAGGCAGTGCCCTCAATTTTGGTGATTTTATTTCCTGTTAGCTCTAACATTCCTGTTTATTCACTTCTTATTGACAGTTCTTGACCTTTTCTATGTACAGATCAGTACAATCTCCTTCACTCCTGCGATCCGATCGCAAGACGCGATCGGATGTGGATATAATTTGACAGGGATTCAGAGAATTAAGATGAATGGTGCTTTATGGATTCCTATTCTGCCCCCTCCAGTTGTTGATGCTCGTTATCAGGGACTGTGCCTACAGTGTGGCCGCCGCATTAAGGGCCGATCTAACCTCTGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5248#0 ATGTTCGCGGCGGCGCGGCGGGGTGGTTCGTCTGCGAGATCAGTACAATCTCCTTCACTC 60 consensus_5248#1 ------------------------------------------------------------ consensus_5248#2 ------------------------------------------------------------ consensus_5248#0 CTGCGATCCGATCGCAAGACGCGATCGGATGTGGATATAATTTGACAGGGATTCAGAGAA 120 consensus_5248#1 ------------------------------------------------------------ consensus_5248#2 ------------------------------------------------------------ consensus_5248#0 TTAAGATGAATGGTGCTTTATGGATTCCTATTCTGCCCCCTCCAGTTGTTGATGCTCGTT 180 consensus_5248#1 ------------------------------------------------------------ consensus_5248#2 ------------------------------------------------------------ consensus_5248#0 ATCAGGGACTGTGCCTACAGTGTGGCCGCCGCATTAAGGGCCGATCTAACCTCTGTTCCA 240 consensus_5248#1 ------------------------------------------------------------ consensus_5248#2 ------------------------------------------------------------ consensus_5248#0 TTTCCTGCAGACTATTGCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGG 300 consensus_5248#1 ------GCAGACTATTGCGGGTGCATACCGGAGCTAGGCGAGGTATGGCTCAAAACCTGG 54 consensus_5248#2 --------------TTTTAAGAGTAATGCTGTGTTATGCGTTCTTAAGTCCTTGATCC-- 44 ** * * * * * * ** *** * * * * * consensus_5248#0 TGGAATTTTCAGAGTCTGTTGGACAGCCGATCCATCAGCTGGATCAGCTCTGTGGGCAAT 360 consensus_5248#1 TGGAATTTTCAGAGTCTGTTGGACAGCTGATCCATCAGCTGGATCAGCTCTGTGGGCAAT 114 consensus_5248#2 -CTAATCCTTGTTGTTTTTGCAGCAG-TAGTCTTCCAGGCTACTAGGCAGTGCCCTCAAT 102 *** * ** * * *** ** *** * ** ** **** consensus_5248#0 GCCTCCGGTCCTTTTGTGGTGTTTCCTGTCCGAACCATCTGGTCCACCCAC-ACCCCCAG 419 consensus_5248#1 GCCTCCGGTCCTTTTGTGGTGTTTCCTGTCCGAACCTTTTGGTCCACCCACCACCCCCAG 174 consensus_5248#2 ---TTTGGTGATTTTATT-TCCTGTTAGCTCTAACATTCCTGTTTATTCACTTCTTATTG 158 * *** **** * * * * * *** * ** * *** * * consensus_5248#0 GGTAATCATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATG--GCTGGTTGG 477 consensus_5248#1 GGTAATCATGCTGCAGGACCTGATATAATTACTATTGAGCGTTTGAATG--GCTGGTTGG 232 consensus_5248#2 ACAGTTCTTGACCTTTTCTATGTACAGATCAGTACAATCTCCTTCACTCCTGCGATCCGA 218 ** ** ** ** * ** ** * * ** * consensus_5248#0 TCATAGACCAAGAACAGCTCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAG 537 consensus_5248#1 TCATAGACCAAGAACAGCTCCCAGTGGAATTTGGCCAAGATATTCATGTAATGGTTGGAG 292 consensus_5248#2 TCGCAAGACGCGATCGGATGTGGATATAATTTGAC--AGGGATTCAGAGAATTA----AG 272 ** * * ** * * * * ****** * ** ***** *** ** consensus_5248#0 AGGACGGGCGTCACATGC-TTCCTATTAAGCGCCTCCCCGCTGAGCATGGAGATGGGCAT 596 consensus_5248#1 AGGACGGGCGTCACATGC-TTCCTATTAAGCGCCTCCCCGCTGAGCATGGAGATGGGCAT 351 consensus_5248#2 ATGAATGGTGCTTTATGGATTCCTATTCTGCCCCCTCCAGTTGT---TGATGCTCGTTAT 329 * ** ** * *** ******** ** ** ** * ** ** * * * ** consensus_5248#0 GATGGATTAGTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAGGGTGTAATGAGATGTTC 656 consensus_5248#1 GATGGATTAGTAGAGCCAGATTGGAATCTTTGTGCTCGTGCAGGGTGTAATGAGATGTTC 411 consensus_5248#2 CAGGGACTG---TGCCTACAGTGTGGCCGCCGCATTAAGGGCCGATCTAACCTC-TGTTC 385 * *** * * * * ** * * * * * * *** ***** consensus_5248#0 AATGGAAATGCTGTGTGTTGCTGCATGAGGTGCTTCCATTTACTGTGAGGATACCAAGTG 716 consensus_5248#1 AATGGAAATGCTGTGTGTTGCTGCAAAAAAAAAAAAAAAAAAA----------------- 454 consensus_5248#2 ------------------------------------------------------------ consensus_5248#0 GATGTGATTAAATAAGTTTAAGAAATACCCCTG 749 consensus_5248#1 --------------------------------- consensus_5248#2 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||