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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1972 fasta sequence
[CGCCATGCTTCCGGTGCTTCCTCTTCCCTCTTCCTTGTTCCAAGATAGGAATCCAATAAGCTGTCCTGTTAGTTTTCAGTTTTTCATCCAAAAGGTGTAGATTAGGAGGTGAAAATGAAGGTGCAAGTAGAGGACTAGAGGTTCCTTCAGGTTTTCTACTTGCCTTGCGCTTGCAGATTTTGCAGAGAAGGATATCCTATCACCTTGCAAACATGGCGCAGGCTCTGAGTTTGGGGTTGCTTCTTGCGTTTCTGGCAATTCAATCCTGCATCGCCATTGAGCTGACTGATCACATCGACTTGTGGCCTATGCCAACGTCGGTGAGCCATGGAACACAAAGACTTATGTCAGCAAAGATATCACAATGTCAATGGAGGGAAGCACGTATCCTGACGGGAAAGGGATCTTGAAGGATGCCTTCCAGAGGGTAGTTGATTTAATGAAACTGAACCATGTCGTTGATGGTGCAAACCCAAGTTCTTTTGTACTCACTGGTGTAAATGTAGTTGTCCATTCACCTGAAGATGAGCTCAAATTCGGAGTAGATGAATCATATAACTTATCTGTTCCTACAGCAGGATATCCATTGCGCGTACAGATTGAGGCTCAAACAGTATTTGGAGCACTTCATGCTTTACAGACATTTAGCCAACTGTGTTACTTCGATTTCACATCAAAACTTATAGAACTCATCTCGGCTCCTTGGAGAATTTCTGACACACCAAGATTTCCTTACCGAGGACTTCTTATTGATACCTCAAGGCACTACCTTCCTGTTACGGTAATTAAAAAAGTGATTGATACAATGGCCTACAGTAAATTGAACGTTCTCCATTGGCATATTGTGGATGCACAGTCATTTCCCATTGAAATACCTTCATACCCTAAACTGTGGAACGGTTCATATTCTTTTTCAGAGAGATATACGACGTCTGATGCTGTAGACATTGTACGATATGCTGAAAATCGAGGTGTAAATGTTATGGCTGAGATTGATGTTCCTGGTCATGCTCTGTCATGGGGCGTTGGCTACCCATCATTGTGGCCATCAGATAGCTGCAAAGAACCACTTGATGTCAGTAACAACTTCACGTTTGGAGTTATTGATGGAATTCTTTCAGATTTTAGCAAAGTTTTTAAATTCAAATTTGTGCATTTAGGAGGTGATGAAGTCAACACAAGCTGCTGGACTGCAACACCCCACATTAAGAAATGGTTGGATGATAACCAAATGAATGTGTCAGATGCATACAGATATTTTGTGTTGAGATCCCAAAAGCTAGCAATATCACACGGTTATGATGTCATCAACTGGGAGGAAACATTTAACAATTTTGGAGACAAATTGGACCGTAGAACCGTGGTTCATAACTGGCTTGGAGAGGATGTAGCACCAAAAGTGGTTGCGGCAGGGCTGAGATGCATCGTAAGCAACCAGGATAAGTGGTACCTAGATCACTTAGATGCCACATGGGAGGGGTTTTACACGAATGAACCTCTGAAAGGTATTGACGACCCAGAGCAGCAAAGTTTGGTCATTGGTGGTGAGGTTTGTATGTGGGGCGAACAAATTGACGCATCGGATATTGAACAAACCATTTGGCCACGTGCTGCAGCTGCTGCAGAGAGACTATGGACTCCTATTGAGAAGATTGCAGAAGACCCAAGATTGGTCACGTCAAGATTGGCACGCTTCAGGTGTTTGCTGAACCAAAGAGGGGTAGCTGCTGCACCGGTGGCTGGGTATGGCCGTACAGCACCATATGAACCTGGTCCCTGTGTAAGGCAATAGGATATTCATAGCAAGATGAAGGTAGTATGAACAGAGGATAAACTTTGTTCAGGATTCACTTTTACCAAGTGTAACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAAGTTAACCTATTATCCCTATTTTTCCCCTCTTCCAATTTTCAACAGAATAATT]
[+] EMBL AK070632 [CGCCATGCTTCCGGTGCTTCCTCTTCCCTCTTCCTTGTTCCAAGATAGGAATCCAATAAGCTGTCCTGTTAGTTTTCAGTTTTTCATCCAAAAGGTGTAGATTAGGAGGTGAAAATGAAGGTGCAAGTAGAGGACTAGAGGTTCCTTCAGGTTTTCTACTTGCCTTGCGCTTGCAGATTTTGCAGAGAAGGATATCCTATCACCTTGCAAACATGGCGCAGGCTCTGAGTTTGGGGTTGCTTCTTGCGTTTCTGGCAATTCAATCCTGCATCGCCATTGAGCTGACTGATCACATCGACTTGTGGCCTATGCCAACGTCGGTGAGCCATGGAACACAAAGACTTATGTCAGCAAAGATATCACAATGTCAATGGAGGGAAGCACGTATCCTGACGGGAAAGGGATCTTGAAGGATGCCTTCCAGAGGGTAGTTGATTTAATGAAACTGAACCATGTCGTTGATGGTGCAAACCCAAGTTCTTTTGTACTCACTGGTGTAAATGTAGTTGTCCATTCACCTGAAGATGAGCTCAAATTCGGAGTAGATGAATCATATAACTTATCTGTTCCTACAGCAGGATATCCATTGCGCGTACAGATTGAGGCTCAAACAGTATTTGGAGCACTTCATGCTTTACAGACATTTAGCCAACTGTGTTACTTCGATTTCACATCAAAACTTATAGAACTCATCTCGGCTCCTTGGAGAATTTCTGACACACCAAGATTTCCTTACCGAGGACTTCTTATTGATACCTCAAGGCACTACCTTCCTGTTACGGTAATTAAAAAAGTGATTGATACAATGGCCTACAGTAAATTGAACGTTCTCCATTGGCATATTGTGGATGCACAGTCATTTCCCATTGAAATACCTTCATACCCTAAACTGTGGAACGGTTCATATTCTTTTTCAGAGAGATATACGACGTCTGATGCTGTAGACATTGTACGATATGCTGAAAATCGAGGTGTAAATGTTATGGCTGAGATTGATGTTCCTGGTCATGCTCTGTCATGGGGCGTTGGCTACCCATCATTGTGGCCATCAGATAGCTGCAAAGAACCACTTGATGTCAGTAACAACTTCACGTTTGGAGTTATTGATGGAATTCTTTCAGATTTTAGCAAAGTTTTTAAATTCAAATTTGTGCATTTAGGAGGTGATGAAGTCAACACAAGCTGCTGGACTGCAACACCCCACATTAAGAAATGGTTGGATGATAACCAAATGAATGTGTCAGATGCATACAGATATTTTGTGTTGAGATCCCAAAAGCTAGCAATATCACACGGTTATGATGTCATCAACTGGGAGGAAACATTTAACAATTTTGGAGACAAATTGGACCGTAGAACCGTGGTTCATAACTGGCTTGGAGAGGATGTAGCACCAAAAGTGGTTGCGGCAGGGCTGAGATGCATCGTAAGCAACCAGGATAAGTGGTACCTAGATCACTTAGATGCCACATGGGAGGGGTTTTACACGAATGAACCTCTGAAAGGTATTGACGACCCAGAGCAGCAAAGTTTGGTCATTGGTGGTGAGGTTTGTATGTGGGGCGAACAAATTGACGCATCGGATATTGAACAAACCATTTGGCCACGTGCTGCAGCTGCTGCAGAGAGACTATGGACTCCTATTGAGAAGATTGCAGAAGACCCAAGATTGGTCACGTCAAGATTGGCACGCTTCAGGTGTTTGCTGAACCAAAGAGGGGTAGCTGCTGCACCGGTGGCTGGGTATGGCCGTACAGCACCATATGAACCTGGTCCCTGTGTAAGGCAATAGGATATTCATAGCAAGATGAAGGTAGTATGAACAGAGGATAAACTTTGTTCAGGATTCACTTTTACCAAGTGTAACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAAGTTAACCTATTATCCCTATTTTTCCCCTCTTCCAATTTTCAACAGAATAATT]
consensusID : consensus_5249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 421 fasta sequence
[AGAGGACGAGCCAAGGGGGTTTGTATGTGGGGCGGCCAAATTGACGCATCGGATATTGAACAAACCATTTGGCCACGTGCTGCAGCTGCTGCAGAGAGACTATGGACTCCTATTGAGAAGATTGCAGAAGACCCAAGATTGGTCACGTCAAGATTGGCACGCTTCAGGTGTTTGCTGAACCAAAGAGGGGTAGCTGCTGCACCGGTGGCTGGGTATGGCCGTACAGCACCATATGAACCTGGTCCCTGTGTAAGGCAATAGGATATTCATAGCAAGATGAAGGTAGTATGAACAGAGGATAACCTTTGTTCAGGATTCACTTTTACCAAGTGTAACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAAGTTAACCTATTATCCCTAAAAAAAAAAAAAAA]
[-] EMBL CA759691 [AGAGGACGAGCCAAGGGGGTTTGTATGTGGGGCGGCCAAATTGACGCATCGGATATTGAACAAACCATTTGGCCACGTGCTGCAGCTGCTGCAGAGAGACTATGGACTCCTATTGAGAAGATTGCAGAAGACCCAAGATTGGTCACGTCAAGATTGGCACGCTTCAGGTGTTTGCTGAACCAAAGAGGGGTAGCTGCTGCACCGGTGGCTGGGTATGGCCGTACAGCACCATATGAACCTGGTCCCTGTGTAAGGCAATAGGATATTCATAGCAAGATGAAGGTAGTATGAACAGAGGATAACCTTTGTTCAGGATTCACTTTTACCAAGTGTAACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAAGTTAACCTATTATCCCTAAAAAAAAAAAAAAA]
[-] EMBL CA759690 [AGAGGACGAGCCAAGGGGGTTTGTATGTGGGGCGGCCAAATTGACGCATCGGATATTGAACAAACCATTTGGCCACGTGCTGCAGCTGCTGCAGAGAGACTATGGACTCCTATTGAGAAGATTGCAGAAGACCCAAGATTGGTCACGTCAAGATTGGCACGCTTCAGGTGTTTGCTGAACCAAAGAGGGGTAGCTGCTGCACCGGTGGCTGGGTATGGCCGTACAGCACCATATGAACCTGGTCCCTGTGTAAGGCAATAGGATATTCATAGCAAGATGAAGGTAGTATGAACAGAGGATAACCTTTGTTCAGGATTCACTTTTACCAAGTGTAACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAAGTTAACCTATTATCCCTAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5249#0 CGCCATGCTTCCGGTGCTTCCTCTTCCCTCTTCCTTGTTCCAAGATAGGAATCCAATAAG 60
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 CTGTCCTGTTAGTTTTCAGTTTTTCATCCAAAAGGTGTAGATTAGGAGGTGAAAATGAAG 120
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 GTGCAAGTAGAGGACTAGAGGTTCCTTCAGGTTTTCTACTTGCCTTGCGCTTGCAGATTT 180
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 TGCAGAGAAGGATATCCTATCACCTTGCAAACATGGCGCAGGCTCTGAGTTTGGGGTTGC 240
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 TTCTTGCGTTTCTGGCAATTCAATCCTGCATCGCCATTGAGCTGACTGATCACATCGACT 300
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 TGTGGCCTATGCCAACGTCGGTGAGCCATGGAACACAAAGACTTATGTCAGCAAAGATAT 360
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 CACAATGTCAATGGAGGGAAGCACGTATCCTGACGGGAAAGGGATCTTGAAGGATGCCTT 420
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 CCAGAGGGTAGTTGATTTAATGAAACTGAACCATGTCGTTGATGGTGCAAACCCAAGTTC 480
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 TTTTGTACTCACTGGTGTAAATGTAGTTGTCCATTCACCTGAAGATGAGCTCAAATTCGG 540
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 AGTAGATGAATCATATAACTTATCTGTTCCTACAGCAGGATATCCATTGCGCGTACAGAT 600
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 TGAGGCTCAAACAGTATTTGGAGCACTTCATGCTTTACAGACATTTAGCCAACTGTGTTA 660
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 CTTCGATTTCACATCAAAACTTATAGAACTCATCTCGGCTCCTTGGAGAATTTCTGACAC 720
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 ACCAAGATTTCCTTACCGAGGACTTCTTATTGATACCTCAAGGCACTACCTTCCTGTTAC 780
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 GGTAATTAAAAAAGTGATTGATACAATGGCCTACAGTAAATTGAACGTTCTCCATTGGCA 840
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 TATTGTGGATGCACAGTCATTTCCCATTGAAATACCTTCATACCCTAAACTGTGGAACGG 900
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 TTCATATTCTTTTTCAGAGAGATATACGACGTCTGATGCTGTAGACATTGTACGATATGC 960
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 TGAAAATCGAGGTGTAAATGTTATGGCTGAGATTGATGTTCCTGGTCATGCTCTGTCATG 1020
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 GGGCGTTGGCTACCCATCATTGTGGCCATCAGATAGCTGCAAAGAACCACTTGATGTCAG 1080
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 TAACAACTTCACGTTTGGAGTTATTGATGGAATTCTTTCAGATTTTAGCAAAGTTTTTAA 1140
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 ATTCAAATTTGTGCATTTAGGAGGTGATGAAGTCAACACAAGCTGCTGGACTGCAACACC 1200
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 CCACATTAAGAAATGGTTGGATGATAACCAAATGAATGTGTCAGATGCATACAGATATTT 1260
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 TGTGTTGAGATCCCAAAAGCTAGCAATATCACACGGTTATGATGTCATCAACTGGGAGGA 1320
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 AACATTTAACAATTTTGGAGACAAATTGGACCGTAGAACCGTGGTTCATAACTGGCTTGG 1380
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 AGAGGATGTAGCACCAAAAGTGGTTGCGGCAGGGCTGAGATGCATCGTAAGCAACCAGGA 1440
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 TAAGTGGTACCTAGATCACTTAGATGCCACATGGGAGGGGTTTTACACGAATGAACCTCT 1500
consensus_5249#1 ------------------------------------------------------------
consensus_5249#0 GAAAGGTATTGACGACCCAGAGCAGCAAAGTTTGGTCATTGGTGGTGAGGTTTGTATGTG 1560
consensus_5249#1 --------------------------AGAGGACGA-----GCCAAGGGGGTTTGTATGTG 29
* ** * * * ************
consensus_5249#0 GGGCGAACAAATTGACGCATCGGATATTGAACAAACCATTTGGCCACGTGCTGCAGCTGC 1620
consensus_5249#1 GGGCGGCCAAATTGACGCATCGGATATTGAACAAACCATTTGGCCACGTGCTGCAGCTGC 89
***** *****************************************************
consensus_5249#0 TGCAGAGAGACTATGGACTCCTATTGAGAAGATTGCAGAAGACCCAAGATTGGTCACGTC 1680
consensus_5249#1 TGCAGAGAGACTATGGACTCCTATTGAGAAGATTGCAGAAGACCCAAGATTGGTCACGTC 149
************************************************************
consensus_5249#0 AAGATTGGCACGCTTCAGGTGTTTGCTGAACCAAAGAGGGGTAGCTGCTGCACCGGTGGC 1740
consensus_5249#1 AAGATTGGCACGCTTCAGGTGTTTGCTGAACCAAAGAGGGGTAGCTGCTGCACCGGTGGC 209
************************************************************
consensus_5249#0 TGGGTATGGCCGTACAGCACCATATGAACCTGGTCCCTGTGTAAGGCAATAGGATATTCA 1800
consensus_5249#1 TGGGTATGGCCGTACAGCACCATATGAACCTGGTCCCTGTGTAAGGCAATAGGATATTCA 269
************************************************************
consensus_5249#0 TAGCAAGATGAAGGTAGTATGAACAGAGGATAAACTTTGTTCAGGATTCACTTTTACCAA 1860
consensus_5249#1 TAGCAAGATGAAGGTAGTATGAACAGAGGATAACCTTTGTTCAGGATTCACTTTTACCAA 329
********************************* **************************
consensus_5249#0 GTGTAACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAA 1920
consensus_5249#1 GTGTAACATCAGCATCTCAATATTCAGATAGTTCAGTGGTTAGACTATTGAATATCCTAA 389
************************************************************
consensus_5249#0 GTTAACCTATTATCCCTATTTTTCCCCTCTTCCAATTTTCAACAGAATAATT 1972
consensus_5249#1 GTTAACCTATTATCCCTA---------------AAAAAAAAAAAAAA----- 421
****************** ** ** * **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||