|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1305 fasta sequence
[AGAGGCTCCAACGGTCACATTATCCTCGCTGACTCCGCCGCGCGCCGCGTGCTCGCCTTCCTCCCCCTCGCGCCACCACCGCCGCCGCCGAGTCCTCGTCACCGGAGAGCGAGGGGGTCTCCGCCGTGGTCGCCTGCGCGCTACGCGGCGACGCTGCCGGCTTCCTTCCGCCGGAGTCAACCTTGGGGGTAAGGATTGCTGCAAACAACTCCAGTTTCTGAATAAAGACAGTGCCGATATTAATGGATAAGAAACAGACCTCGTTAGGCACTCCTGTCTACAGGACAAATCCCTTCGATTCTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGACGCACAGATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACATCACGCAAAGTAAATGATTGTGTCAGAGCCGCTGAAGCAATCAGAGAAGATGCTACAAAAACACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCATCGAGTAGCCGCGGATATTGAACACGATCTTAGTATGAGTGAGAAGCTTTTGGGAAGTCTAGGGGGGCTGTTTTCCAAGACATGGAAGCCAAAGAGAAACCAACAGATAAAAGGACCGATTTCACAAAATAATTCTTTCACAAGTTCAGCGAACCACATGGAACAGAGGCAGAGGCTAGGTATTTCCTCAACACGTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGGTTGAGATAGCAAAGCAGGATGATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGAAGGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGCAAAATAAATCACTGGATGCTTTCGGTGATGATGTTGATGAACTGAACTTCAGAGTTAAAGGGGCAAACCAACGGGGACGCCGGTTATTGGGCAAATGATGCCATCAGGTTGTCGAACCACAGCAACTCTGTTTCTAGCAGTTTTCTCCATCCCATGGGATTCAGGACTTGTGAGTGCGATTAGCAGATGCGCCTACTTCATCTGGATATTCTGTCGTGTCTGAATTCTGAGCAAATATTCAGATTCCCGTGTTGTGTTGTTGTATGAGAAATCGTCATATACACTTGTTGTATGATAAGTTGATAGCTTCAATTACTTGGTGTAGGACATAACCACCATTCCCCTTTTCTCTTAGAATCTTGATGTAATCTGTACTCCTAAATATGCCAGAACGAGATGAGAAGAGAATTGAATCAAGCGATAGAA]
[+] EMBL AK102778 [AGAGGCTCCAACGGTCACATTATCCTCGCTGACTCCGCCGCGCGCCGCGTGCTCGCCTTCCTCCCCCTCGCGCCACCACCGCCGCCGCCGAGTCCTCGTCACCGGAGAGCGAGGGGGTCTCCGCCGTGGTCGCCTGCGCGCTACGCGGCGACGCTGCCGGCTTCCTTCCGCCGGAGTCAACCTTGGGGGTAAGGATTGCTGCAAACAACTCCAGTTTCTGAATAAAGACAGTGCCGATATTAATGGATAAGAAACAGACCTCGTTAGGCACTCCTGTCTACAGGACAAATCCCTTCGATTCTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGACGCACAGATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACATCACGCAAAGTAAATGATTGTGTCAGAGCCGCTGAAGCAATCAGAGAAGATGCTACAAAAACACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCATCGAGTAGCCGCGGATATTGAACACGATCTTAGTATGAGTGAGAAGCTTTTGGGAAGTCTAGGGGGGCTGTTTTCCAAGACATGGAAGCCAAAGAGAAACCAACAGATAAAAGGACCGATTTCACAAAATAATTCTTTCACAAGTTCAGCGAACCACATGGAACAGAGGCAGAGGCTAGGTATTTCCTCAACACGTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGGTTGAGATAGCAAAGCAGGATGATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGAAGGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGCAAAATAAATCACTGGATGCTTTCGGTGATGATGTTGATGAACTGAACTTCAGAGTTAAAGGGGCAAACCAACGGGGACGCCGGTTATTGGGCAAATGATGCCATCAGGTTGTCGAACCACAGCAACTCTGTTTCTAGCAGTTTTCTCCATCCCATGGGATTCAGGACTTGTGAGTGCGATTAGCAGATGCGCCTACTTCATCTGGATATTCTGTCGTGTCTGAATTCTGAGCAAATATTCAGATTCCCGTGTTGTGTTGTTGTATGAGAAATCGTCATATACACTTGTTGTATGATAAGTTGATAGCTTCAATTACTTGGTGTAGGACATAACCACCATTCCCCTTTTCTCTTAGAATCTTGATGTAATCTGTACTCCTAAATATGCCAGAACGAGATGAGAAGAGAATTGAATCAAGCGATA ]
[+] EMBL AK064327 [ GAGGCTCCAACGGTCACATTATCCTCGCTGACTCCGCCGCGCGCCGCGTGCTCGCCTTCCTCCCCCTCGCGCCACCACCGCCGCCGCCGAGTCCTCGTCACCGGAGAGCGAGGGGGTCTCCGCCGTGGTCGCCTGCGCGCTACGCGGCGACGCTGCCGGCTTCCTTCCGCCGGAGTCAACCTTGGGGGTAAGGATTGCTGCAAACAACTCCAGTTTCTGAATAAAGACAGTGCCGATATTAATGGATAAGAAACAGACCTCGTTAGGCACTCCTGTCTACAGGACAAATCCCTTCGATTCTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGACGCACAGATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACATCACGCAAAGTAAATGATTGTGTCAGAGCCGCTGAAGCAATCAGAGAAGATGCTACAAAAACACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCATCGAGTAGCCGCGGATATTGAACACGATCTTAGTATGAGTGAGAAGCTTTTGGGAAGTCTAGGGGGGCTGTTTTCCAAGACATGGAAGCCAAAGAGAAACCAACAGATAAAAGGACCGATTTCACAAAATAATTCTTTCACAAGTTCAGCGAACCACATGGAACAGAGGCAGAGGCTAGGTATTTCCTCAACACGTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGGTTGAGATAGCAAAGCAGGATGATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGAAGGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGTAAAATAAATCACTGGATGCTTTCGGTGATGATGTTGATGAACTGAACTTCAGAGTTAAAGGGGCAAACCAACGGGGACGCCGGTTATTGGGCAAATGATGCCATCAGGTTGTCGAACCACAGCAACTCTGTTTCTAGCAGTTTTCTCCATCCCATGGGATTCAGGACTTGTGAGTGCGATTAGCAGATGCGCCTACTTCATCTGGATATTCTGTCGTGTCTGAATTCTGAGCAAATATTCAGATTCCCGTGTTGTGTTGTTGTATGAGAAATCGTCATATACACTTGTTGTATGATAAGTTGATAGCTTCAATTACTTGGTGTAGGACATAACCACCATTCCCCTTTTCTCTTAGAATCTTGATGTAATCTGTACTCCTAAATATGCCAGAACGAGATGAGAAGAGAATTGAATCAAGCGATAGAA]
consensusID : consensus_5250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence
[CCCTTGTGTGCTAGGGTTGATGCGCGCGTGCGATGGCTTTGGTTGGTGCGGATTTAGGTATCCTTAGTTTGATACCAACAACTTGATAGATTGCCGCAAACAACTCCAGTTTCTGAATAAAGATAGTGCCGATATTAATGGATAAGAAACAGACCTCGTTAGGCACTCCTGTCTACAGGACAAATCCCTTCGATTCTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGACGCACAGATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACCTCACGCAAAGTAAATGATTGTGTCAGAGCCGCTGAAGCAATCAGAGAAGATGCTACAAAAACACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCATCGAGTAGCCGCGGATATTGAACACGATCTTAGTATGAGTGAGAAGCTTTTGGGAAGTCTAGGGGGGCTGTTTTCCAAGACATGGAAGCCAAAGAGAAACCAACAGATAAAAGGACCGATTTCACAAAATAATTCTTTCACAAGTTCAGCGAACCACATGGAACAGAGGCAGAGGCTAGGTATTTCCTCAACACGTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGGTTGAGATAGCAAAGCAGGATGATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGAANGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGCAAAATAAATCACTGGATGCTTT]
[+] EMBL CA767252 [CCCTTGTGTGCTAGGGTTGATGCGCGCGTGCGATGGCTTTGGTTGGTGCGGATTTAGGTATCCTTAGTTTGATACCAACAACTTGATAGATTGCCGCAAACAACTCCAGTTTCTGAATAAAGATAGTGCCGATATTAATGGATAAGAAACAGACCTCGTTAGGCACTCCTGTCTACAGGACAAATCCCTTCGATTCTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGACGCACAGATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACCTCACGCAAAGTAAATGATTGTGTCAGAGCCGCTGAAGCAATCAGAGAAGATGCTACAAAAACACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCATCGAGTAGCCGCGGATATTGAACACGATCTTAGTATGAGTGAGAAGCTTTTGGGAAGTCTAGGGGGGCTGTTTTCCAAGACATGGAAGCCAAAGAGAAACCAACAGATAAAAGGACCGATTTCACAAAATAATTCTTTCACAAGTTCAGCGAACCACATGGAACAGAGGCAGAGGCTAGGTATTTCCTCAACACGTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGGTTGAGATAGCAAAGCAGGATGATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGAANGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGCAAAATAAATCACTGGATGCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5250#0 AGAGGCTCCAACGGTCACATTATCCTCGCTGACTCCGCCGCGCGCCGCGTGCTCGCCTTC 60
consensus_5250#1 ------------------------------------------------------------
consensus_5250#0 CTCCCCCTCGCGCCACCACCGCCGCCGCCGAGTCCTCGTCACCGGAGAGCGAGGGGGTCT 120
consensus_5250#1 -----------------------------------------CCCTTGTGTGCTAGGGTTG 19
** * * * ****
consensus_5250#0 CCGCCGTGGTCGCCTGCGCGCTACGCGGCGACGCTGCCGGCTTCCTTCCGCCGGAGTCAA 180
consensus_5250#1 ATGC-GCGCGTGCGATGGCTTTGGTTGGTGCGGATTTAGGTATCCTTAGTTTGATACCAA 78
** * * ** ** * ** * * * ** ***** * ***
consensus_5250#0 CCTTGGGGGTAAGGATTGCTGCAAACAACTCCAGTTTCTGAATAAAGACAGTGCCGATAT 240
consensus_5250#1 CAACTTG---ATAGATTGCCGCAAACAACTCCAGTTTCTGAATAAAGATAGTGCCGATAT 135
* * * ****** **************************** ***********
consensus_5250#0 TAATGGATAAGAAACAGACCTCGTTAGGCACTCCTGTCTACAGGACAAATCCCTTCGATT 300
consensus_5250#1 TAATGGATAAGAAACAGACCTCGTTAGGCACTCCTGTCTACAGGACAAATCCCTTCGATT 195
************************************************************
consensus_5250#0 CTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGAC 360
consensus_5250#1 CTGACTCTGATTCTGAAGTGCCCTCAAGACCGTCAAGGGCACAATCTGTCCCAGTGCGAC 255
************************************************************
consensus_5250#0 GCACAGATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACAT 420
consensus_5250#1 GCACAGATCAATCTATACAAGAGCTGGAGGACTATGCTGTTGATAAAGTAGAAGAAACCT 315
********************************************************** *
consensus_5250#0 CACGCAAAGTAAATGATTGTGTCAGAGCCGCTGAAGCAATCAGAGAAGATGCTACAAAAA 480
consensus_5250#1 CACGCAAAGTAAATGATTGTGTCAGAGCCGCTGAAGCAATCAGAGAAGATGCTACAAAAA 375
************************************************************
consensus_5250#0 CACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCATCGAGTAGCCGCGG 540
consensus_5250#1 CACTGGTTACTTTGCATCGTCAAGGTGAACAGATCACCCGAACTCATCGAGTAGCCGCGG 435
************************************************************
consensus_5250#0 ATATTGAACACGATCTTAGTATGAGTGAGAAGCTTTTGGGAAGTCTAGGGGGGCTGTTTT 600
consensus_5250#1 ATATTGAACACGATCTTAGTATGAGTGAGAAGCTTTTGGGAAGTCTAGGGGGGCTGTTTT 495
************************************************************
consensus_5250#0 CCAAGACATGGAAGCCAAAGAGAAACCAACAGATAAAAGGACCGATTTCACAAAATAATT 660
consensus_5250#1 CCAAGACATGGAAGCCAAAGAGAAACCAACAGATAAAAGGACCGATTTCACAAAATAATT 555
************************************************************
consensus_5250#0 CTTTCACAAGTTCAGCGAACCACATGGAACAGAGGCAGAGGCTAGGTATTTCCTCAACAC 720
consensus_5250#1 CTTTCACAAGTTCAGCGAACCACATGGAACAGAGGCAGAGGCTAGGTATTTCCTCAACAC 615
************************************************************
consensus_5250#0 GTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGG 780
consensus_5250#1 GTCAGCCATCTCCAAATCAAGTACATCGTTCACCTGCAACTGCAATCGAGAAAGTTCAGG 675
************************************************************
consensus_5250#0 TTGAGATAGCAAAGCAGGATGATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGA 840
consensus_5250#1 TTGAGATAGCAAAGCAGGATGATGCGCTCTCAGACTTGAGTAACATGTTGGGAGAGCTGA 735
************************************************************
consensus_5250#0 AGGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGCAAAATAAATCACTGGATGCTT 900
consensus_5250#1 ANGGTATGGCATTGGATATGGGCACAGAAATTGAAAGGCAAAATAAATCACTGGATGCTT 795
* **********************************************************
consensus_5250#0 TCGGTGATGATGTTGATGAACTGAACTTCAGAGTTAAAGGGGCAAACCAACGGGGACGCC 960
consensus_5250#1 T----------------------------------------------------------- 796
*
consensus_5250#0 GGTTATTGGGCAAATGATGCCATCAGGTTGTCGAACCACAGCAACTCTGTTTCTAGCAGT 1020
consensus_5250#1 ------------------------------------------------------------
consensus_5250#0 TTTCTCCATCCCATGGGATTCAGGACTTGTGAGTGCGATTAGCAGATGCGCCTACTTCAT 1080
consensus_5250#1 ------------------------------------------------------------
consensus_5250#0 CTGGATATTCTGTCGTGTCTGAATTCTGAGCAAATATTCAGATTCCCGTGTTGTGTTGTT 1140
consensus_5250#1 ------------------------------------------------------------
consensus_5250#0 GTATGAGAAATCGTCATATACACTTGTTGTATGATAAGTTGATAGCTTCAATTACTTGGT 1200
consensus_5250#1 ------------------------------------------------------------
consensus_5250#0 GTAGGACATAACCACCATTCCCCTTTTCTCTTAGAATCTTGATGTAATCTGTACTCCTAA 1260
consensus_5250#1 ------------------------------------------------------------
consensus_5250#0 ATATGCCAGAACGAGATGAGAAGAGAATTGAATCAAGCGATAGAA 1305
consensus_5250#1 ---------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||