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Oryza sativa
cluster # 5252 cluster # 5252       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5252#0 length = 1015 sequences # 2  
consensus_5252#1 length = 666 sequences # 1  

consensusID : consensus_5252#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1015
fasta sequence
                              [GTGTAGATGCTCTACAAGCTCATGATGACACATCTGGGAGTCTTGAAGCTCTGAGTGCTGCTGAATTAAAGTTGAAAGATATACTGAATTCACCTTCCGTGGATGCTGCATGCAGAAAGATAGATGACTTAGCTGAGAAAAAGGAATTGGATTCTGCGTTAGTCTTAATGCTTTCAAAAGCTTGGTCAGCTGCAAAGGGTACTGACATCACAAAATCTGAGGCTAAAGATATAATGTTTCATCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATACTAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCATTTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGGTATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTA-AAATCATCAAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTC-TTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGG-CCTTGCATACTCTGCTTTCTGCGCAGCATCCT-GCTCATCGTTCCAATCGGATTC-TCCATT-GCTGCTTGAAATGGACAATGGTTATACTTGACTGATTAAAT-GCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAG-CATGT-GATATATCAATG-CAATTTTCAGTTAGAAGTCTTGCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTCTCTGATAAATATAGATTTTTTTCCCTCTAAAGTTGTATGTATGTCTCCAAGATCCTTGTGATGAGTTAGTTAATGATTCAACTCGAATAATTGTACAGATCCTTCTGATCTACCACATATTTACTTAATGGTATGGAAA]

[+] EMBL AK062800             [GTGTAGATGCTCTACAAGCTCATGATGACACATCTGGGAGTCTTGAAGCTCTGAGTGCTGCTGAATTAAAGTTGAAAGATATACTGAATTCACCTTCCGTGGATGCTGCATGCAGAAAGATAGATGACTTAGCTGAGAAAAAGGAATTGGATTCTGCGTTAGTCTTAATGCTTTCAAAAGCTTGGTCAGCTGCAAAGGGTACTGACATCACAAAATCTGAGGCTAAAGATATAATGTTTCATCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATACTAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCATTTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGGTATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTA AAATCATCAAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTC TTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGG CCTTGCATACTCTGCTTTCTGCGCAGCATCCT GCTCATCGTTCCAATCGGATTC TCCATT GCTGCTTGAAATGGACAATGGTTATACTTGACTGATTAAAT GCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAG CATGT GATATATCAATG CAATTTTCAGTTAGAAGTCTTGCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTCTCTGATAAATATAGATTTTTTTCCCTCTAAAGTTGTATGTATGTCTCCAAGATCCTTGTGATGAGTTAGTTAATGATTCAACTCGAATAATTGTACAGATCCTTCTGATCTACCACATATTTACTTAATGGTATGGAAA]
[+] EMBL BM421084             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccgAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTAGAAATCATCNAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTCGTTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCCTTGCATACTCTGCTTTCTGCGCAGCATCCTGGCTCATCGTTCC ATCGGATTCGTCCATTGGCTGCTTGAAATGGAC ATGGTTATACTTGACTGATTAAATGGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAGCCATGTGGATATATCAATGNCAATTTTCAGTTAGAAGTCTNGCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTCTCNGATAAATATAGATTTTTTNCCCTCTA                                                                                                              ]


>consensus_5252#0 GTGTAGATGCTCTACAAGCTCATGATGACACATCTGGGAGTCTTGAAGCTCTGAGTGCTG CTGAATTAAAGTTGAAAGATATACTGAATTCACCTTCCGTGGATGCTGCATGCAGAAAGA TAGATGACTTAGCTGAGAAAAAGGAATTGGATTCTGCGTTAGTCTTAATGCTTTCAAAAG CTTGGTCAGCTGCAAAGGGTACTGACATCACAAAATCTGAGGCTAAAGATATAATGTTTC ATCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATAC TAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCAT TTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGG TATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTC TCCTTAGGCAAGCAAGGGACTTGATGAACCCTAAAATCATCAAAAGAATTGAGGAGATAC TAAAATTAATCAAGGATAAATACCTCTGACTCTTTAAGAAAATGGGGGTTTCACATTCAT ACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCTTGCATACTCTGCTT TCTGCGCAGCATCCTGCTCATCGTTCCAATCGGATTCTCCATTGCTGCTTGAAATGGACA ATGGTTATACTTGACTGATTAAATGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGAT TGTAGCATGTGATATATCAATGCAATTTTCAGTTAGAAGTCTTGCCTTCCTTTCTTTTTG CACTTATATGCTTACTGGTTAACAGGGTTGTAACTCTCTGATAAATATAGATTTTTTTCC CTCTAAAGTTGTATGTATGTCTCCAAGATCCTTGTGATGAGTTAGTTAATGATTCAACTC GAATAATTGTACAGATCCTTCTGATCTACCACATATTTACTTAATGGTATGGAAA



consensusID : consensus_5252#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence
                              [TCGCGGCACGAGGCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATACTAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCATTTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGGTATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTAAAATCATCAAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTCTTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCTTGCATACTCTGCTTTTTGCGCAGCATCCTGCTCATCGTTCCAATCGGATTCTCCATTGCTGCTTGAAATGGACAATGGTTATACTTGACTGATTAAATGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAGCATGTGATATATCAATGCAATTTTCAGTTAGAAGTCTTCCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTGGGTGATAAATATAGATTTT]

[-] EMBL CB635938             [TCGCGGCACGAGGCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATACTAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCATTTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGGTATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTAAAATCATCAAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTCTTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCTTGCATACTCTGCTTTTTGCGCAGCATCCTGCTCATCGTTCCAATCGGATTCTCCATTGCTGCTTGAAATGGACAATGGTTATACTTGACTGATTAAATGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAGCATGTGATATATCAATGCAATTTTCAGTTAGAAGTCTTCCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTGGGTGATAAATATAGATTTT]


>consensus_5252#1 TCGCGGCACGAGGCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGA TATCAGAATACTAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATT GAATGACGCATTTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACAC GAGTCCAGAGGTATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAG AGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTAAAATCATCAAAAGAAT TGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTCTTTAAGAAAATGGGGGT TTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCTTGC ATACTCTGCTTTTTGCGCAGCATCCTGCTCATCGTTCCAATCGGATTCTCCATTGCTGCT TGAAATGGACAATGGTTATACTTGACTGATTAAATGCAGATTGATGTAGCTTTGTATGGT GTAAAAGTGATTGTAGCATGTGATATATCAATGCAATTTTCAGTTAGAAGTCTTCCCTTC CTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTGGGTGATAAATATA GATTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5252#0      GTGTAGATGCTCTACAAGCTCATGATGACACATCTGGGAGTCTTGAAGCTCTGAGTGCTG 60
consensus_5252#1      ------------------------------------------------------------
                                                                                  

consensus_5252#0      CTGAATTAAAGTTGAAAGATATACTGAATTCACCTTCCGTGGATGCTGCATGCAGAAAGA 120
consensus_5252#1      ------------------------------------------------------------
                                                                                  

consensus_5252#0      TAGATGACTTAGCTGAGAAAAAGGAATTGGATTCTGCGTTAGTCTTAATGCTTTCAAAAG 180
consensus_5252#1      ------------------------------------------------------------
                                                                                  

consensus_5252#0      CTTGGTCAGCTGCAAAGGGTACTGACATCACAAAATCTGAGGCTAAAGATATAATGTTTC 240
consensus_5252#1      -------------------------------------------TCGCGGCACGAGG---- 13
                                                                 *   *  *  * *    

consensus_5252#0      ATCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATAC 300
consensus_5252#1      --CTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATAC 71
                        **********************************************************

consensus_5252#0      TAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCAT 360
consensus_5252#1      TAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCAT 131
                      ************************************************************

consensus_5252#0      TTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGG 420
consensus_5252#1      TTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGG 191
                      ************************************************************

consensus_5252#0      TATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTC 480
consensus_5252#1      TATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTC 251
                      ************************************************************

consensus_5252#0      TCCTTAGGCAAGCAAGGGACTTGATGAACCCTAAAATCATCAAAAGAATTGAGGAGATAC 540
consensus_5252#1      TCCTTAGGCAAGCAAGGGACTTGATGAACCCTAAAATCATCAAAAGAATTGAGGAGATAC 311
                      ************************************************************

consensus_5252#0      TAAAATTAATCAAGGATAAATACCTCTGACTCTTTAAGAAAATGGGGGTTTCACATTCAT 600
consensus_5252#1      TAAAATTAATCAAGGATAAATACCTCTGACTCTTTAAGAAAATGGGGGTTTCACATTCAT 371
                      ************************************************************

consensus_5252#0      ACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCTTGCATACTCTGCTT 660
consensus_5252#1      ACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCTTGCATACTCTGCTT 431
                      ************************************************************

consensus_5252#0      TCTGCGCAGCATCCTGCTCATCGTTCCAATCGGATTCTCCATTGCTGCTTGAAATGGACA 720
consensus_5252#1      TTTGCGCAGCATCCTGCTCATCGTTCCAATCGGATTCTCCATTGCTGCTTGAAATGGACA 491
                      * **********************************************************

consensus_5252#0      ATGGTTATACTTGACTGATTAAATGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGAT 780
consensus_5252#1      ATGGTTATACTTGACTGATTAAATGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGAT 551
                      ************************************************************

consensus_5252#0      TGTAGCATGTGATATATCAATGCAATTTTCAGTTAGAAGTCTTGCCTTCCTTTCTTTTTG 840
consensus_5252#1      TGTAGCATGTGATATATCAATGCAATTTTCAGTTAGAAGTCTTCCCTTCCTTTCTTTTTG 611
                      ******************************************* ****************

consensus_5252#0      CACTTATATGCTTACTGGTTAACAGGGTTGTAACTCTCTGATAAATATAGATTTTTTTCC 900
consensus_5252#1      CACTTATATGCTTACTGGTTAACAGGGTTGTAACTGGGTGATAAATATAGATTTT----- 666
                      ***********************************   *****************     

consensus_5252#0      CTCTAAAGTTGTATGTATGTCTCCAAGATCCTTGTGATGAGTTAGTTAATGATTCAACTC 960
consensus_5252#1      ------------------------------------------------------------
                                                                                  

consensus_5252#0      GAATAATTGTACAGATCCTTCTGATCTACCACATATTTACTTAATGGTATGGAAA 1015
consensus_5252#1      -------------------------------------------------------
                                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)