These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1015 fasta sequence [GTGTAGATGCTCTACAAGCTCATGATGACACATCTGGGAGTCTTGAAGCTCTGAGTGCTGCTGAATTAAAGTTGAAAGATATACTGAATTCACCTTCCGTGGATGCTGCATGCAGAAAGATAGATGACTTAGCTGAGAAAAAGGAATTGGATTCTGCGTTAGTCTTAATGCTTTCAAAAGCTTGGTCAGCTGCAAAGGGTACTGACATCACAAAATCTGAGGCTAAAGATATAATGTTTCATCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATACTAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCATTTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGGTATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTA-AAATCATCAAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTC-TTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGG-CCTTGCATACTCTGCTTTCTGCGCAGCATCCT-GCTCATCGTTCCAATCGGATTC-TCCATT-GCTGCTTGAAATGGACAATGGTTATACTTGACTGATTAAAT-GCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAG-CATGT-GATATATCAATG-CAATTTTCAGTTAGAAGTCTTGCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTCTCTGATAAATATAGATTTTTTTCCCTCTAAAGTTGTATGTATGTCTCCAAGATCCTTGTGATGAGTTAGTTAATGATTCAACTCGAATAATTGTACAGATCCTTCTGATCTACCACATATTTACTTAATGGTATGGAAA] [+] EMBL AK062800 [GTGTAGATGCTCTACAAGCTCATGATGACACATCTGGGAGTCTTGAAGCTCTGAGTGCTGCTGAATTAAAGTTGAAAGATATACTGAATTCACCTTCCGTGGATGCTGCATGCAGAAAGATAGATGACTTAGCTGAGAAAAAGGAATTGGATTCTGCGTTAGTCTTAATGCTTTCAAAAGCTTGGTCAGCTGCAAAGGGTACTGACATCACAAAATCTGAGGCTAAAGATATAATGTTTCATCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATACTAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCATTTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGGTATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTA AAATCATCAAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTC TTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGG CCTTGCATACTCTGCTTTCTGCGCAGCATCCT GCTCATCGTTCCAATCGGATTC TCCATT GCTGCTTGAAATGGACAATGGTTATACTTGACTGATTAAAT GCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAG CATGT GATATATCAATG CAATTTTCAGTTAGAAGTCTTGCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTCTCTGATAAATATAGATTTTTTTCCCTCTAAAGTTGTATGTATGTCTCCAAGATCCTTGTGATGAGTTAGTTAATGATTCAACTCGAATAATTGTACAGATCCTTCTGATCTACCACATATTTACTTAATGGTATGGAAA] [+] EMBL BM421084 [ ccgAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTAGAAATCATCNAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTCGTTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCCTTGCATACTCTGCTTTCTGCGCAGCATCCTGGCTCATCGTTCC ATCGGATTCGTCCATTGGCTGCTTGAAATGGAC ATGGTTATACTTGACTGATTAAATGGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAGCCATGTGGATATATCAATGNCAATTTTCAGTTAGAAGTCTNGCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTCTCNGATAAATATAGATTTTTTNCCCTCTA ] consensusID : consensus_5252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [TCGCGGCACGAGGCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATACTAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCATTTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGGTATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTAAAATCATCAAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTCTTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCTTGCATACTCTGCTTTTTGCGCAGCATCCTGCTCATCGTTCCAATCGGATTCTCCATTGCTGCTTGAAATGGACAATGGTTATACTTGACTGATTAAATGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAGCATGTGATATATCAATGCAATTTTCAGTTAGAAGTCTTCCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTGGGTGATAAATATAGATTTT] [-] EMBL CB635938 [TCGCGGCACGAGGCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATACTAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCATTTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGGTATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTCTCCTTAGGCAAGCAAGGGACTTGATGAACCCTAAAATCATCAAAAGAATTGAGGAGATACTAAAATTAATCAAGGATAAATACCTCTGACTCTTTAAGAAAATGGGGGTTTCACATTCATACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCTTGCATACTCTGCTTTTTGCGCAGCATCCTGCTCATCGTTCCAATCGGATTCTCCATTGCTGCTTGAAATGGACAATGGTTATACTTGACTGATTAAATGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGATTGTAGCATGTGATATATCAATGCAATTTTCAGTTAGAAGTCTTCCCTTCCTTTCTTTTTGCACTTATATGCTTACTGGTTAACAGGGTTGTAACTGGGTGATAAATATAGATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5252#0 GTGTAGATGCTCTACAAGCTCATGATGACACATCTGGGAGTCTTGAAGCTCTGAGTGCTG 60 consensus_5252#1 ------------------------------------------------------------ consensus_5252#0 CTGAATTAAAGTTGAAAGATATACTGAATTCACCTTCCGTGGATGCTGCATGCAGAAAGA 120 consensus_5252#1 ------------------------------------------------------------ consensus_5252#0 TAGATGACTTAGCTGAGAAAAAGGAATTGGATTCTGCGTTAGTCTTAATGCTTTCAAAAG 180 consensus_5252#1 ------------------------------------------------------------ consensus_5252#0 CTTGGTCAGCTGCAAAGGGTACTGACATCACAAAATCTGAGGCTAAAGATATAATGTTTC 240 consensus_5252#1 -------------------------------------------TCGCGGCACGAGG---- 13 * * * * * consensus_5252#0 ATCTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATAC 300 consensus_5252#1 --CTATACATGACTGCAGTAGCCAATCTCCAGAGACAAATGCCAAAGGATATCAGAATAC 71 ********************************************************** consensus_5252#0 TAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCAT 360 consensus_5252#1 TAAAGCATCTTATAATGATTGAGGATCCAGAAGAACGCTTGAGTGCATTGAATGACGCAT 131 ************************************************************ consensus_5252#0 TTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGG 420 consensus_5252#1 TTACTCCTGGGCCTGAACTTCAGGGGGATAATGTTGATACATTATACACGAGTCCAGAGG 191 ************************************************************ consensus_5252#0 TATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTC 480 consensus_5252#1 TATTACACACTTGGGCCAGTGCTATTGTTGATGCATATTATAACAGCAGAGAAGGCACTC 251 ************************************************************ consensus_5252#0 TCCTTAGGCAAGCAAGGGACTTGATGAACCCTAAAATCATCAAAAGAATTGAGGAGATAC 540 consensus_5252#1 TCCTTAGGCAAGCAAGGGACTTGATGAACCCTAAAATCATCAAAAGAATTGAGGAGATAC 311 ************************************************************ consensus_5252#0 TAAAATTAATCAAGGATAAATACCTCTGACTCTTTAAGAAAATGGGGGTTTCACATTCAT 600 consensus_5252#1 TAAAATTAATCAAGGATAAATACCTCTGACTCTTTAAGAAAATGGGGGTTTCACATTCAT 371 ************************************************************ consensus_5252#0 ACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCTTGCATACTCTGCTT 660 consensus_5252#1 ACTTTCCTAGTGATTAGGCAGTATAATTAAAGAAATTGGATGGCCTTGCATACTCTGCTT 431 ************************************************************ consensus_5252#0 TCTGCGCAGCATCCTGCTCATCGTTCCAATCGGATTCTCCATTGCTGCTTGAAATGGACA 720 consensus_5252#1 TTTGCGCAGCATCCTGCTCATCGTTCCAATCGGATTCTCCATTGCTGCTTGAAATGGACA 491 * ********************************************************** consensus_5252#0 ATGGTTATACTTGACTGATTAAATGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGAT 780 consensus_5252#1 ATGGTTATACTTGACTGATTAAATGCAGATTGATGTAGCTTTGTATGGTGTAAAAGTGAT 551 ************************************************************ consensus_5252#0 TGTAGCATGTGATATATCAATGCAATTTTCAGTTAGAAGTCTTGCCTTCCTTTCTTTTTG 840 consensus_5252#1 TGTAGCATGTGATATATCAATGCAATTTTCAGTTAGAAGTCTTCCCTTCCTTTCTTTTTG 611 ******************************************* **************** consensus_5252#0 CACTTATATGCTTACTGGTTAACAGGGTTGTAACTCTCTGATAAATATAGATTTTTTTCC 900 consensus_5252#1 CACTTATATGCTTACTGGTTAACAGGGTTGTAACTGGGTGATAAATATAGATTTT----- 666 *********************************** ***************** consensus_5252#0 CTCTAAAGTTGTATGTATGTCTCCAAGATCCTTGTGATGAGTTAGTTAATGATTCAACTC 960 consensus_5252#1 ------------------------------------------------------------ consensus_5252#0 GAATAATTGTACAGATCCTTCTGATCTACCACATATTTACTTAATGGTATGGAAA 1015 consensus_5252#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||