These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1311 fasta sequence [TACATTGCGGATGCCTTAAGGGGATTAGCAGTGCGCCACCTATTTTTCTCAGCCTGGGGCTGTCACATAGGACGAAGACACAAGAAGAATAATACTTGCCACAAGTCTCACAGTGCTACATAGCCTCAAAGAGTAGCCACACAAATAAAAAAAATCATTTCTTTCTCCCTTATCCTCAGTCCGCTCCCCACCTACGCGCGCTTCTCCATCTCCGCCCACGCGCCTCGCCCCTTCTCCTCTCGCCGCACTTCCCCTTCCTCCTCCGGCGCGGCGGCGGCGCCGAACCACCCAGTTGCGGCGTCGAGCGGCGCGGCGGACGGGCGGCAGCGTGGAGCAGCGCAGTGGAAGGGTGGCGGCACGAACGGCCCGAGCGGCAACGCCAGAACTGGTCAACGGGGTGGCTCAAGCGCCTCCCCTCCTCCTCCTCTTCTGGCGCCGCGGATCGAGGGGCAGCGGCGGCGGCCGGCGGGACGGCCCGAGCGGCGGCGGGGTGGTCGAGCGGCGGCTCACATGATCAATACTCCCTCCGGCCACCTCCCTCGGCTCCCTCCCCTCCCCGTCCCCTCCGGCGGCGCTGGGCACAGGCCTCACCCTCTCCTCTTCCCGGCGGACGACNGGTGGCGGCGCCGCCGAGCTCGCCAGATCCGTCCTCGGATGGCGGCGGCGCCGAGCTCGCTAGATCTGCCTTCGGTCGGCAGCAATGACGACGATGGTAGTGGTCCATCTTTCCTTCCTCCCTTCTCTCCGGCGAGCTCGGGTGGTGGCCTCGCCGGCGACGCCCGTCGCCCCCTTGCATGGGGCCATGCCCTCTTCGGCGATGCTCTCCTCTCCCCGGCAGCGTCGGGCGGTGGAAGCGAGCGGGGTTTGGGGCGGTAGGACGACACGGCCCACGAGTGTGGGCCCCCCCTGTGAAACAAAGGAGGAACGGGGAGCCAAAGTTGGCTCCCCGGTCTTGGGCAAGCCGCGTGGATTGCCGACGTGGGGACGAATATTCCGTTTTTAGGGGTGAGGCTGAATGCCCCATGGGAGCATTGTGAATGGCCTAAGAGCAAGTTTAATAGTATAATCAACTACTAACTCCAAATCATCTATATCCAATGTAATAGCCAATTTATACAATAGTTGCTTGCTACACTATTAATATCTGGTCCCCCCTATCATACACATATTACGTCTTGGAGTCCGTGCTGCAGCTGGCTACAGATATGTAGCCCGCTTCTCTTCTCTCTCTTTTTTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGTCTGCTAGGGTACCTGGCTTATAACTTCTGGCGAAAAAAA] [+] EMBL CB666295 [TACATTGCGGATGCCTTAAGGGGATTAGCAGTGCGCCACCTATTTTTCTCAGCCTGGGGCTGTCACATAGGACGAAGACACAAGAAGAATAATACTTGCCACAAGTCTCACAGTGCTACATAGCCTCAAAGAGTAGCCACACAAATAAAAAAAATCATTTCTTTCTCCCTTATCCTCAGTCCGCTCCCCACCTACGCGCGCTTCTCCATCTCCGCCCACGCGCCTCGCCCCTTCTCCTCTCGCCGCACTTCCCCTTCCTCCTCCGGCGCGGCGGCGGCGCCGAACCACCCAGTTGCGGCGTCGAGCGGCGCGGCGGACGGGCGGCAGCGTGGAGCAGCGCAGTGGAAGGGTGGCGGCACGAACGGCCCGAGCGGCAACGCCAGAACTGGTCAACGGGGTGGCTCAAGCGCCTCCCCTCCTCCTCCTCTTCTGGCGCCGCGGATCGAGGGGCAGCGGCGGCGGCCGGCGGGACGGCCCGAGCGGCGGCGGGGTGGTCGAGCGGCGGCTCACATGATCAATACTCCCTCCGGCCACCTCCCTCGGCTCCCTCCCCTCCCCGTCCCCTCCGGCGGCGCTGGGCACAGGCCTCACCCTCTCCTCTTCCCGGCGGACGACNGGTGGCGGCGCCGCCGAGCTCGCCAGATCCGTCCTCGGATGGCGGCGGCGCCGAGCTCGCTAGATCTGCCTTCGGTCGGCAGCAATGACGACGATGGTAGTGGTCCATCTTTCCTTCCTCCCTTCTCTCCGGCGAGCTCGGGTGGTGGCCTCGCCGGCGACGCCCGTCGCCCCCTTGCATGGGGCCATGCCCTCTTCGGCGATGCTCTC ] [-] EMBL CB666296 [ ACCCTCTCCTCTTCCCGGCGGACGAC GGTGGCGGCGCCGCCGAGCTCGCCAGATCCGTCCTCGGATGGCGGCGGCGCCGAGCTCGCTAGATCTGCCTTCGGTCGGCAGCAATGACGACGATGGTAGTGGTCCATCTTTCCTTCCTCCCTTCTCTCCGGCGAGCTCGGGTGGTGGCCTCGCCGGNGACGCCCGTCGCCCCCTTGCATGGGGCCATGCCCTCTTCGGCGATGCTCTCCTCTCCCCGGCAGCGTCGGGCGGTGGAAGCGAGCGGGGTTTGGGGCGGTAGGACGACACGGCCCACGAGTGTGGGCCCCCCCTGTGAAACAAAGGAGGAACGGGGAGCCAAAGTTGGCTCCCCGGTCTTGGGCAAGCCGCGTGGATTGCCGACGTGGGGACGAATATTCCGTTTTTAGGGGTGAGGCTGAATGCCCCATGGGAGCATTGTGAATGGCCTAAGAGCAAGTTTAATAGTATAATCAACTACTAACTCCAAATCATCTATATCCAATGTAATAGCCAATTTATACAATAGTTGCTTGCTACACTATTAATATCTGGTCCCCCCTATCATACACATATTACGTCTTGGAGTCCGTGCTGCAGCTGGCTACAGATATGTAGCCCGCTTCTCTTCTCTCTCTTTTTTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGTCTGCTAGGGTACCTGGCTTATAACTTCTGGCGAAAAAAA] consensusID : consensus_5257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [GTGGAAGCGAGCCGGGGTTTTGGGGCCGGTAGGACGACCACGGCCCACGAGTGTTGGGCCCCACCCTGTGAAACCACAAGGAGGAACCACGGGGAGCCCACAAGTTGGCTCCACCGGGTTCTTGGGACAANGCCGCGCTGGATTTGCCGAACGCTGGGGACGAATATTTCCGTTTCTAGGGGGTGAGGCTGAATGCCAACAGTGGGAGCACTTGTGAATGGCCTAAGAGCAAGTTTAATAGTATAATCAACTATTAACCTCCAAATCATCTATATCCATGTAATAGCCATTTATACATAGTTGCTTGCTACACTAAAAAA] [+] EMBL BQ908893 [GTGGAAGCGAGCCGGGGTTTTGGGGCCGGTAGGACGACCACGGCCCACGAGTGTTGGGCCCCACCCTGTGAAACCACAAGGAGGAACCACGGGGAGCCCACAAGTTGGCTCCACCGGGTTCTTGGGACAANGCCGCGCTGGATTTGCCGAACGCTGGGGACGAATATTTCCGTTTCTAGGGGGTGAGGCTGAATGCCAACAGTGGGAGCACTTGTGAATGGCCTAAGAGCAAGTTTAATAGTATAATCAACTATTAACCTCCAAATCATCTATATCCATGTAATAGCCATTTATACATAGTTGCTTGCTACACTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5257#0 TACATTGCGGATGCCTTAAGGGGATTAGCAGTGCGCCACCTATTTTTCTCAGCCTGGGGC 60 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 TGTCACATAGGACGAAGACACAAGAAGAATAATACTTGCCACAAGTCTCACAGTGCTACA 120 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 TAGCCTCAAAGAGTAGCCACACAAATAAAAAAAATCATTTCTTTCTCCCTTATCCTCAGT 180 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 CCGCTCCCCACCTACGCGCGCTTCTCCATCTCCGCCCACGCGCCTCGCCCCTTCTCCTCT 240 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 CGCCGCACTTCCCCTTCCTCCTCCGGCGCGGCGGCGGCGCCGAACCACCCAGTTGCGGCG 300 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 TCGAGCGGCGCGGCGGACGGGCGGCAGCGTGGAGCAGCGCAGTGGAAGGGTGGCGGCACG 360 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 AACGGCCCGAGCGGCAACGCCAGAACTGGTCAACGGGGTGGCTCAAGCGCCTCCCCTCCT 420 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 CCTCCTCTTCTGGCGCCGCGGATCGAGGGGCAGCGGCGGCGGCCGGCGGGACGGCCCGAG 480 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 CGGCGGCGGGGTGGTCGAGCGGCGGCTCACATGATCAATACTCCCTCCGGCCACCTCCCT 540 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 CGGCTCCCTCCCCTCCCCGTCCCCTCCGGCGGCGCTGGGCACAGGCCTCACCCTCTCCTC 600 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 TTCCCGGCGGACGACNGGTGGCGGCGCCGCCGAGCTCGCCAGATCCGTCCTCGGATGGCG 660 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 GCGGCGCCGAGCTCGCTAGATCTGCCTTCGGTCGGCAGCAATGACGACGATGGTAGTGGT 720 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 CCATCTTTCCTTCCTCCCTTCTCTCCGGCGAGCTCGGGTGGTGGCCTCGCCGGCGACGCC 780 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 CGTCGCCCCCTTGCATGGGGCCATGCCCTCTTCGGCGATGCTCTCCTCTCCCCGGCAGCG 840 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 TCGGGCGGTGGAAGCGAGCGGGG--TTTGGGGC-GGTAGGACGAC-ACGGCCCACGAGTG 896 consensus_5257#1 -------GTGGAAGCGAGCCGGGGTTTTGGGGCCGGTAGGACGACCACGGCCCACGAGTG 53 ************ *** ******** *********** ************** consensus_5257#0 T-GGGCCCC-CCCTGTGAAACAA--AGGAGGAAC---GGGGAGCCAA--AGTTGGCTCC- 946 consensus_5257#1 TTGGGCCCCACCCTGTGAAACCACAAGGAGGAACCACGGGGAGCCCACAAGTTGGCTCCA 113 * ******* *********** * ********* ******** * ********** consensus_5257#0 CCGG--TCTTGGGC--AAGCCGCG-TGGATT-GCCGA-CG-TGGGGACGAATATT-CCGT 997 consensus_5257#1 CCGGGTTCTTGGGACAANGCCGCGCTGGATTTGCCGAACGCTGGGGACGAATATTTCCGT 173 **** ******* * ****** ****** ***** ** ************** **** consensus_5257#0 TTTTAGGGG-TGAGGCTGAATGCC--CCATGGGAGCA-TTGTGAATGGCCTAAGAGCAAG 1053 consensus_5257#1 TTCTAGGGGGTGAGGCTGAATGCCAACAGTGGGAGCACTTGTGAATGGCCTAAGAGCAAG 233 ** ****** ************** * ******** ********************** consensus_5257#0 TTTAATAGTATAATCAACTACTAAC-TCCAAATCATCTATATCCAATGTAATAGCCAATT 1112 consensus_5257#1 TTTAATAGTATAATCAACTATTAACCTCCAAATCATCTATATCCA-TGTAATAGCCA-TT 291 ******************** **** ******************* *********** ** consensus_5257#0 TATACAATAGTTGCTTGCTACACTATTAATATCTGGTCCCCCCTATCATACACATATTAC 1172 consensus_5257#1 TATACA-TAGTTGCTTGCTACACTAAAAAA------------------------------ 320 ****** ****************** ** consensus_5257#0 GTCTTGGAGTCCGTGCTGCAGCTGGCTACAGATATGTAGCCCGCTTCTCTTCTCTCTCTT 1232 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 TTTTTATCTCTTTAAAATATGTTTATAGCTGGCTTATAGTCTGCTAGGGTACCTGGCTTA 1292 consensus_5257#1 ------------------------------------------------------------ consensus_5257#0 TAACTTCTGGCGAAAAAAA 1311 consensus_5257#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||