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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 814 fasta sequence
[CTTTTTGCCACATTTAGATGTGTAATTAACTTTTTACCACTGGACCCACATGTCATAGATACATGTGGATCCACATGTCATTGAGATATGAGTGACAAATAGTTATTTGCCAAATCTAAAAGTGGCAAATAGTTAAACCCCCACTATGCCATCCCAATGCAGCATTGCACACACTGCCACCCCAAACAGCAGTTATAGACACGAATCACCGTGATGTTCATCAGTCACCACCCCGGTTAGCTACTTTGCTTCAATTATAAAAAGGAGATAAACCATTCTGGTTCTGGGTATCGAAGTCTCCAGGCAAAATGTGAGAACATCTGTGGACTCAGGGAACCAGAGGCTCTTTGCAAAAAGTGAGACGCCTTGGACAAAACGTGTAGGAGAGGACCAGGGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTCACCTAGCCTCCGTGCTTGCAGATGCCTTCAAGGACGCCAGAGCTTCCCGTAATGCATCCTCCATCTCAGAGTTCCCTGGATCCAACTTGAATCCATCGTAAAGTGTTTCGCAAGCACTCTCATAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTAGTAGGCCTTCAGCCAGTCAGGCCGCAATTTCCTGCATTCATAAGCATCCAACAAAGCCTTGTGTCCATCACCCATGTGATGCCAGCAAAGGCTTCTATTTGAGAACAAGGTTGCATCATCAGGGTAAAGGTCCACTGCCTGACTGTAGAATCCTGTTGCAGAAAGATAATCCTTTTTCTCGACCGCCTTATTACCCAGTGACTTTAACTCTGTTGCTTTCCTTT]
[+] EMBL CB659617 [CTTTTTGCCACATTTAGATGTGTAATTAACTTTTTACCACTGGACCCACATGTCATAGATACATGTGGATCCACATGTCATTGAGATATGAGTGACAAATAGTTATTTGCCAAATCTAAAAGTGGCAAATAGTTAAACCCCCACTATGCCATCCCAATGCAGCATTGCACACACTGCCACCCCAAACAGCAGTTATAGACACGAATCACCGTGATGTTCATCAGTCACCACCCCGGTTAGCTACTTTGCTTCAATTATAAAAAGGAGATAAACCATTCTGGTTCTGGGTATCGAAGTCTCCAGGCAAAATGTGAGAACATCTGTGGACTCAGGGAACCAGAGGCTCTTTGCAAAAAGTGAGACGCCTTGGACAAAACGTGTAGGAGAGGACCAGGGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTCACCTAGCCTCCGTGCTTGCAGATGCCTTCAAGGACGCCAGAGCTTCCCGTAATGCATCCTCCATCTCAGAGTTCCCTGGATCCAACTTGAATCCATCGTAAAGTGTTTCGCAAGCACTCTCATAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTAGTAGGCCTTCAGCCAGTCAGGCCGCAATTTCCTGCATTCATAAGCATCCAACAAAGCCTTGTGTCCATCACCCATGTGATGCCAGCAAAGGCTTCTATTTGAGAACAAGGTTGCATCATCAGGGTAAAGGTCCACTGCCTGACTGTAGAATCCTGTTGCAGAAAGATAATCCTTTTTCTCGACCGCCTTATTACCCAGTGACTTTAACTCTGTTGCTTTCCTTT]
consensusID : consensus_5258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence
[GAACCTAACTTATCTTTTAACAGACATGATTTTTACACAACATCCAAGACATCATGTGAGATAAGTACATTAAATCTAAGTATGAAAGAGTGATGTTTGCATTGAAAAAGTAATGTATAATACTATTTTTTTTTTCTTAATGATATAGAGTTTATGGAAACTATGTGTAGTGTCTTGGGTTGAGACTGGCACTATGCCATCCCAATGCAGCATTGCACCCACACCACCCCAAACGGCAGTTATAGACGCGAAACACCGTGATGTTCAACAGTCACCACCCCGGTTAGCTACTTTGCTTCACTTACAAAAAGGACACCCATTATGGTTCTGGGTATCGAAGTCTCTGGGCAAAATGTGAGAACACCTGTGGACTCAGGGAACCAAAGGCTCTTGGACAAAAAGTGAGGCGCCTTGGACAAAACGTGTAGGAGAGGACCAGAGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTCACCTAGCCTCTGTGCTTGCAGATGTCTTCAAGGACTCCAGAGCTTCCCGTAATGCATCCTCCATCTCAGAGTTCCCTGGATCCAACTTCAATCCATCGTAAAGTGTTTCGCAAGCACTCTCGTAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTAGTAGGCCTTTGGCCAGTCAGGCCGCAATTTCCTGCATTCATAAGCATCCAACAAAGCCTTGCCTCCATTACCCATGTGATGCCAGCAAAGGCTTCTTACTGTAGAATCCTGTTGCAGAAAGATAATCCTTTTTCTCGACCGCCTTATTCCCCAGTGACTTTAACTCT]
[+] EMBL CB629559 [GAACCTAACTTATCTTTTAACAGACATGATTTTTACACAACATCCAAGACATCATGTGAGATAAGTACATTAAATCTAAGTATGAAAGAGTGATGTTTGCATTGAAAAAGTAATGTATAATACTATTTTTTTTTTCTTAATGATATAGAGTTTATGGAAACTATGTGTAGTGTCTTGGGTTGAGACTGGCACTATGCCATCCCAATGCAGCATTGCACCCACACCACCCCAAACGGCAGTTATAGACGCGAAACACCGTGATGTTCAACAGTCACCACCCCGGTTAGCTACTTTGCTTCACTTACAAAAAGGACACCCATTATGGTTCTGGGTATCGAAGTCTCTGGGCAAAATGTGAGAACACCTGTGGACTCAGGGAACCAAAGGCTCTTGGACAAAAAGTGAGGCGCCTTGGACAAAACGTGTAGGAGAGGACCAGAGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTCACCTAGCCTCTGTGCTTGCAGATGTCTTCAAGGACTCCAGAGCTTCCCGTAATGCATCCTCCATCTCAGAGTTCCCTGGATCCAACTTCAATCCATCGTAAAGTGTTTCGCAAGCACTCTCGTAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTAGTAGGCCTTTGGCCAGTCAGGCCGCAATTTCCTGCATTCATAAGCATCCAACAAAGCCTTGCCTCCATTACCCATGTGATGCCAGCAAAGGCTTCTTACTGTAGAATCCTGTTGCAGAAAGATAATCCTTTTTCTCGACCGCCTTATTCCCCAGTGACTTTAACTCT]
consensusID : consensus_5258#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTGACACGAATCACCGTGATGTTCATCAGTCACCACCCCGGTTAGCTACTTTGCTTCAATTATAAAAAGGAGATAAACCATTCTGGTTCTGGGTATCGAAGTCTCCAGGCAAAATGTGAGAACATCTGTGGACTCAGGGAACCAGAGGCTCTTTGCAAAAAGTGAGACGCCTTGGACAAAACGTGTAGGAGAGGACCAGGGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTCACCTAGCCTCCGTGCTTGCAGATGCCTTCAAGGACGCCANAGCTTCCCGTAATGCATCCTCCATCTCAGAGTTCCCTGGATCCAACTTGAATCCATCGNAAANTGNTTCGNAAGCANTCTCANAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTATAGGCCTTCAGCCAGTCAGGCCGCAATTTCCTGNATTCATAAGCATCCAACAAAGCCTTGTGTCCATCACCCATGTGATGCCAGCAAAGGCTTCTATTTGANAACAAGGTTGNATCATCAGGGTAAAGGTCCACTGCCTGACTGTAGAATCCTGTTGNCAGAAAGATAATCCTTTTTCTCGACCGCCTTATTACCCAGTGA]
[-] EMBL AU094849 [TTTTTTTTTTTTTTTTTTTTTTTGACACGAATCACCGTGATGTTCATCAGTCACCACCCCGGTTAGCTACTTTGCTTCAATTATAAAAAGGAGATAAACCATTCTGGTTCTGGGTATCGAAGTCTCCAGGCAAAATGTGAGAACATCTGTGGACTCAGGGAACCAGAGGCTCTTTGCAAAAAGTGAGACGCCTTGGACAAAACGTGTAGGAGAGGACCAGGGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTCACCTAGCCTCCGTGCTTGCAGATGCCTTCAAGGACGCCANAGCTTCCCGTAATGCATCCTCCATCTCAGAGTTCCCTGGATCCAACTTGAATCCATCGNAAANTGNTTCGNAAGCANTCTCANAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTATAGGCCTTCAGCCAGTCAGGCCGCAATTTCCTGNATTCATAAGCATCCAACAAAGCCTTGTGTCCATCACCCATGTGATGCCAGCAAAGGCTTCTATTTGANAACAAGGTTGNATCATCAGGGTAAAGGTCCACTGCCTGACTGTAGAATCCTGTTGNCAGAAAGATAATCCTTTTTCTCGACCGCCTTATTACCCAGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5258#0 -------------------------------------------------CTTTTTGCCAC 11
consensus_5258#2 ------------------------------------------------------------
consensus_5258#1 GAACCTAACTTATCTTTTAACAGACATGATTTTTACACAACATCCAAGACATCATGTGAG 60
consensus_5258#0 ATTTAGATGTGTAATTAACTTTTTACCACTGGACCCACATGTCATAGATACATGTGGATC 71
consensus_5258#2 ------------------------------------------------------------
consensus_5258#1 ATAAGTACATTAAATCTAAGTATGAAAGAGTGATGTTTGCATTGAAAAAGTA-ATGTATA 119
consensus_5258#0 CACATGTCATTGAGATATGAGTGACAAATAGTTATTTGCCAAATCTAAAAGTGGCAAATA 131
consensus_5258#2 ------------------------------------------------------------
consensus_5258#1 ATACTATTTTTTTTTTCTTAATGATATAGAGTTTATGGAAACTATGTGTAGTGTCTTGGG 179
consensus_5258#0 GTTAAACCCCCACTATGCCATCCCAATGCAGCATTGCACACACTGCCACCCCAAACAGCA 191
consensus_5258#2 -------------------------------------------TTTTTTTTTTTTTTTTT 17
consensus_5258#1 TTGAGACTGGCACTATGCCATCCCAATGCAGCATTGCACCCAC-ACCACCCCAAACGGCA 238
consensus_5258#0 GTTATAGACACGAATCACCGTGATGTTCATCAGTCACCACCCCGGTTAGCTACTTTGCTT 251
consensus_5258#2 TTTTTTGACACGAATCACCGTGATGTTCATCAGTCACCACCCCGGTTAGCTACTTTGCTT 77
consensus_5258#1 GTTATAGACGCGAAACACCGTGATGTTCAACAGTCACCACCCCGGTTAGCTACTTTGCTT 298
** * *** **** ************** ******************************
consensus_5258#0 CAATTATAAAAAGGAGATAAACCATTCTGGTTCTGGGTATCGAAGTCTCCAGGCAAAATG 311
consensus_5258#2 CAATTATAAAAAGGAGATAAACCATTCTGGTTCTGGGTATCGAAGTCTCCAGGCAAAATG 137
consensus_5258#1 CACTTACAAAAAGGACAC---CCATTATGGTTCTGGGTATCGAAGTCTCTGGGCAAAATG 355
** *** ******** * ***** ********************** *********
consensus_5258#0 TGAGAACATCTGTGGACTCAGGGAACCAGAGGCTCTTTG-CAAAAAGTGAGACGCCTTGG 370
consensus_5258#2 TGAGAACATCTGTGGACTCAGGGAACCAGAGGCTCTTTG-CAAAAAGTGAGACGCCTTGG 196
consensus_5258#1 TGAGAACACCTGTGGACTCAGGGAACCAAAGGCTCTTGGACAAAAAGTGAGGCGCCTTGG 415
******** ******************* ******** * *********** ********
consensus_5258#0 ACAAAACGTGTAGGAGAGGACCAGGGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTC 430
consensus_5258#2 ACAAAACGTGTAGGAGAGGACCAGGGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTC 256
consensus_5258#1 ACAAAACGTGTAGGAGAGGACCAGAGCGCCTTGCCCACCTTGCAAACACCCATGCTGTTC 475
************************ ***********************************
consensus_5258#0 ACCTAGCCTCCGTGCTTGCAGATGCCTTCAAGGACGCCAGAGCTTCCCGTAATGCATCCT 490
consensus_5258#2 ACCTAGCCTCCGTGCTTGCAGATGCCTTCAAGGACGCCANAGCTTCCCGTAATGCATCCT 316
consensus_5258#1 ACCTAGCCTCTGTGCTTGCAGATGTCTTCAAGGACTCCAGAGCTTCCCGTAATGCATCCT 535
********** ************* ********** *** ********************
consensus_5258#0 CCATCTCAGAGTTCCCTGGATCCAACTTGAATCCATCGTAAAGTGTTTCGCAAGCACTCT 550
consensus_5258#2 CCATCTCAGAGTTCCCTGGATCCAACTTGAATCCATCGNAAANTGNTTCGNAAGCANTCT 376
consensus_5258#1 CCATCTCAGAGTTCCCTGGATCCAACTTCAATCCATCGTAAAGTGTTTCGCAAGCACTCT 595
**************************** ********* *** ** **** ***** ***
consensus_5258#0 CATAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTAGTAGGCCTTCAGCCAGTCAG 610
consensus_5258#2 CANAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTA-TAGGCCTTCAGCCAGTCAG 435
consensus_5258#1 CGTAGTCCTTCAGTAGCATCAGAGCAGCACCCTGTCGGTAGTAGGCCTTTGGCCAGTCAG 655
* ************************************* ******** *********
consensus_5258#0 GCCGCAATTTCCTGCATTCATAAGCATCCAACAAAGCCTTGTGTCCATCACCCATGTGAT 670
consensus_5258#2 GCCGCAATTTCCTGNATTCATAAGCATCCAACAAAGCCTTGTGTCCATCACCCATGTGAT 495
consensus_5258#1 GCCGCAATTTCCTGCATTCATAAGCATCCAACAAAGCCTTGCCTCCATTACCCATGTGAT 715
************** ************************** ***** ***********
consensus_5258#0 GCCAGCAAAGGCTTCTATTTGAGAACAAGGTTGCATCATCAGGGTAAAGGTCCACTGCCT 730
consensus_5258#2 GCCAGCAAAGGCTTCTATTTGANAACAAGGTTGNATCATCAGGGTAAAGGTCCACTGCCT 555
consensus_5258#1 GCCAGCAAAGGCTTCTT------------------------------------------- 732
****************
consensus_5258#0 GACTGTAGAATCCTGTTGC-AGAAAGATAATCCTTTTTCTCGACCGCCTTATTACCCAGT 789
consensus_5258#2 GACTGTAGAATCCTGTTGNCAGAAAGATAATCCTTTTTCTCGACCGCCTTATTACCCAGT 615
consensus_5258#1 -ACTGTAGAATCCTGTTGC-AGAAAGATAATCCTTTTTCTCGACCGCCTTATTCCCCAGT 790
***************** ********************************* ******
consensus_5258#0 GACTTTAACTCTGTTGCTTTCCTTT 814
consensus_5258#2 GA----------------------- 617
consensus_5258#1 GACTTTAACTCT------------- 802
**
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||