|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1252 fasta sequence
[CTCTCCGCCGCACGGCCGCCTCCGCCTCCGGCTTCCTCCGCCGCCGCCTCCTCTCCGAGCTCGCCGGGAACGGCGCGCCACTCCCGCGCGTCGGGGCCGTGTACGCCTTCGGGGACAACAGCCACGGCGCGGCGGGGCAGCCGGCGCCGGCCGCCGACGTCTACGTCCCCACGCCCGTGCCCTCCCTCCCGACGTCCGTCGCCGCCGTCGCCGCCGGGCACTACCACTCCCTCGCGGTTTCCGCCGAAGGGGAGGTCTGGGCGTGGGGCCGCAACGATGAAGGTCAGCTCGGCCGCGGGCACCACGCCCCGAGGAATACTTGGAGCAAGCCTGAAAAAGTGAGAGGATTGGAAAATGTTCAAGTCCGAGCTGTATCTGCTTGTGGGGTTGTTTCAGCAGCAATTGGGTGTGATGGCTCTTTATGGGTTTGGGGGAGATCAAAGCGTGGCCAACTTGGGCTTGGAAAGGACATTGTAGAGGCTGCAGTACCTTCTAGAGTGGAAGCACTTGCTAATTATGATATTGTCAAGGTTCTAACTTTCTCCCTGAAATTAAGTAGTCGGATGTTTGCTCCCTTGTGAGAAAAAAGTTGTTAATTGAAGGAATGATGCTAGGTATCATTTGGTCGAGTTCATTCGGTTGCTCTCACATCAAAGGGAGAGGTTTGGGCATGGGGATCTGGCCGAAACGGCAGGCTAGGTTTGGGAAGCTCGATGGATGAGCCTGAGCCTTTCCTCATCGATACCCTGGAAGGAGCAGAGGTTTCACAGGTTGCTGCTGGGATGGACCATACTCTTCTATTGGTTGCTGAGTAGGCTGGGGTTTTCTTCACCACCGAAAGTCCTTTGATTCTTGCCGTTGTCAGTGGAGAGGTTGTCATTGTCCATCTACTGGATACGATCTTTAAAACAAACAGGCGATGTTACTCGATATGCTTGGAACCATGAAATTCAGATGTGTTTCTTCCAGCTAGTTTGACATCACATTCCCCTTGAAAGAGTTAACAGAATGAAGATAGCAAAAGCTAGTCAGACGCCAGTGCCAGTGTGCATTCTCAAACCTCCTCTTATAGAGCATCTTTGTGTGTGAAAAGTTCATTTTCTTCCATCTGTAGTTGTAGACTCGGTACTTATGTTCTATGCCAAAGCTTACCCTATTCCCTGGGATTTGAGGTCTTTGAAAACTCAAAACTCCTTGTAATAAGTTTTGTGTGGTGAACAATATCCTCCGGCAAAATCTTGGTGAAATTTTC]
[+] EMBL AK105298 [CTCTCCGCCGCACGGCCGCCTCCGCCTCCGGCTTCCTCCGCCGCCGCCTCCTCTCCGAGCTCGCCGGGAACGGCGCGCCACTCCCGCGCGTCGGGGCCGTGTACGCCTTCGGGGACAACAGCCACGGCGCGGCGGGGCAGCCGGCGCCGGCCGCCGACGTCTACGTCCCCACGCCCGTGCCCTCCCTCCCGACGTCCGTCGCCGCCGTCGCCGCCGGGCACTACCACTCCCTCGCGGTTTCCGCCGAAGGGGAGGTCTGGGCGTGGGGCCGCAACGATGAAGGTCAGCTCGGCCGCGGGCACCACGCCCCGAGGAATACTTGGAGCAAGCCTGAAAAAGTGAGAGGATTGGAAAATGTTCAAGTCCGAGCTGTATCTGCTTGTGGGGTTGTTTCAGCAGCAATTGGGTGTGATGGCTCTTTATGGGTTTGGGGGAGATCAAAGCGTGGCCAACTTGGGCTTGGAAAGGACATTGTAGAGGCTGCAGTACCTTCTAGAGTGGAAGCACTTGCTAATTATGATATTGTCAAGGTTCTAACTTTCTCCCTGAAATTAAGTAGTCGGATGTTTGCTCCCTTGTGAGAAAAAAGTTGTTAATTGAAGGAATGATGCTAGGTATCATTTGGTCGAGTTCATTCGGTTGCTCTCACATCAAAGGGAGAGGTTTGGGCATGGGGATCTGGCCGAAACGGCAGGCTAGGTTTGGGAAGCTCGATGGATGAGCCTGAGCCTTTCCTCATCGATACCCTGGAAGGAGCAGAGGTTTCACAGGTTGCTGCTGGGATGGACCATACTCTTCTATTGGTTGCTGAGTAGGCTGGGGTTTTCTTCACCACCGAAAGTCCTTTGATTCTTGCCGTTGTCAGTGGAGAGGTTGTCATTGTCCATCTACTGGATACGATCTTTAAAACAAACAGGCGATGTTACTCGATATGCTTGGAACCATGAAATTCAGATGTGTTTCTTCCAGCTAGTTTGACATCACATTCCCCTTGAAAGAGTTAACAGAATGAAGATAGCAAAAGCTAGTCAGACGCCAGTGCCAGTGTGCATTCTCAAACCTCCTCTTATAGAGCATCTTTGTGTGTGAAAAGTTCATTTTCTTCCATCTGTAGTTGTAGACTCGGTACTTATGTTCTATGCCAAAGCTTACCCTATTCCCTGGGATTTGAGGTCTTTGAAAACTCAAAACTCCTTGTAATAAGTTTTGTGTGGTGAACAATATCCTCCGGCAAAATCTTGGTGAAATTTTC]
consensusID : consensus_5274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence
[CGGCGCGGCGGGGCAGCCGGCGCCGGCCGCCGACGTCTACGTCCCCACGCCCGTGCCCTCCCTCCCGACGTCCGTCGCCGCCGTCGCCGCCGGGCACTACCACTCCCTCGCGGTTTCCGCCGAAGGGGAGGTCTGGGCGTGGGGCCGCAACGATGAAGGTCAGCTCGGCCGCGGGCACCACGCCCCGAGGAATACTTGGAGCAAGCCTGAAAAAGTGAGAGGATTGGAAAATGTTCAAGTCCGAGCTGTATCTGCTTGTGGGGTTGTTTCAGCAGCAATTGGGTGTGATGGCTCTTTATGGGTTTGGGGGAGATCAAAGCGTGGCCAACTTGGGCTTGGAAAGGACATTGTAGAGGCTGCAGTACCTTCTAGAGTGGAAGCACTTGCTAATTATGATATTGTCAAGGTATCATTTGGTTGGGGACATGCTATGGCATTGACAAAGGATGGAGGGTTACTTGGCTGGGGATATTCAGAAAACGGAAGGTTAGGAGAAATTGGCCATATTACTCAGGCTTCTTCTGCCAAAGAATTACTTGGAAAAACAGTTGACAAGTACTCTAGCTCAATGCTAGAGGCCGTTGAAAAGATGGTTGAGGAAAAAATAAGGAGTGAAGACAATATGCCCATCATCTGGGAACCTTCGCTTGTTCATGAAGTGTGTCATGTTGAGGTGTCTGATGTGTCATGTGGGCTCGATCATTCTCTGGTTCTCTGCTCTGATGGCATCGTACTGAGCGGTGGAGACAACACTTACGGACAGCTTGGCNA]
[+] EMBL CB674689 [CGGCGCGGCGGGGCAGCCGGCGCCGGCCGCCGACGTCTACGTCCCCACGCCCGTGCCCTCCCTCCCGACGTCCGTCGCCGCCGTCGCCGCCGGGCACTACCACTCCCTCGCGGTTTCCGCCGAAGGGGAGGTCTGGGCGTGGGGCCGCAACGATGAAGGTCAGCTCGGCCGCGGGCACCACGCCCCGAGGAATACTTGGAGCAAGCCTGAAAAAGTGAGAGGATTGGAAAATGTTCAAGTCCGAGCTGTATCTGCTTGTGGGGTTGTTTCAGCAGCAATTGGGTGTGATGGCTCTTTATGGGTTTGGGGGAGATCAAAGCGTGGCCAACTTGGGCTTGGAAAGGACATTGTAGAGGCTGCAGTACCTTCTAGAGTGGAAGCACTTGCTAATTATGATATTGTCAAGGTATCATTTGGTTGGGGACATGCTATGGCATTGACAAAGGATGGAGGGTTACTTGGCTGGGGATATTCAGAAAACGGAAGGTTAGGAGAAATTGGCCATATTACTCAGGCTTCTTCTGCCAAAGAATTACTTGGAAAAACAGTTGACAAGTACTCTAGCTCAATGCTAGAGGCCGTTGAAAAGATGGTTGAGGAAAAAATAAGGAGTGAAGACAATATGCCCATCATCTGGGAACCTTCGCTTGTTCATGAAGTGTGTCATGTTGAGGTGTCTGATGTGTCATGTGGGCTCGATCATTCTCTGGTTCTCTGCTCTGATGGCATCGTACTGAGCGGTGGAGACAACACTTACGGACAGCTTGGCNA]
consensusID : consensus_5274#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence
[GACGAGACAAGGGGATGGAACTGCAGCTCCCAGCTTGGACGACCTGGCAAAGAAGACGTGCCTGCACTAGTCGACGGTCTGAATGGAGAGAGGCCAGTGTCGGCCTCGGCTGGTCGAGTTCATTCGGTTGCTCTCACATCAAAGGGAGAGGTTTGGGCATGGGGATCTGGCCGAAACGGCAGGCTAGGTTTGGGAAGCTCGATGGATGAGCCTGAGCCTTTCCTCATCGATACCCTGGAAGGAGCAGAGGTTTCACAGGTTGCTGCTGGGATGGACCATACTCTTCTATTGGTTGCTGAGTAGGCCGGGGTTTTCTTCACCACCGAAAGTCCTTTGATTCTTGCCGTTGTCAGTGGAGAGGTTGTCATTGTCCATCTACTGGATACGATCTTTAAAACAAACAGGCGATGTTACTCGATATGCTTGGAACCATGAAATTCAGATGTGTTTCTTCCAGCTAGTTTGACATCACATTCCCCCTGAAAGAGTTAACAGAATGAAGATAGCAAAAGCTAGTCAGACGCCAGTGCCAGTGTGCATTCTCAAACCTCCTCTTATAGAGCATCTTTGTGTGTGAAAAGTTCATTTTCTTCCATCTGTAGTTGTAGACTCGGTACTTATGTTCTATGCCAAAGCTTACCCTATTCCCTGGGATTTGAGGTCTTTGAAAACTCAAAACTCCTTGTAATAAGNTTTGNGTGGTGAACAATATCCTCCAGTAGAATCTTGGTGAAATTTT]
[+] EMBL CA767375 [GACGAGACAAGGGGATGGAACTGCAGCTCCCAGCTTGGACGACCTGGCAAAGAAGACGTGCCTGCACTAGTCGACGGTCTGAATGGAGAGAGGCCAGTGTCGGCCTCGGCTGGTCGAGTTCATTCGGTTGCTCTCACATCAAAGGGAGAGGTTTGGGCATGGGGATCTGGCCGAAACGGCAGGCTAGGTTTGGGAAGCTCGATGGATGAGCCTGAGCCTTTCCTCATCGATACCCTGGAAGGAGCAGAGGTTTCACAGGTTGCTGCTGGGATGGACCATACTCTTCTATTGGTTGCTGAGTAGGCCGGGGTTTTCTTCACCACCGAAAGTCCTTTGATTCTTGCCGTTGTCAGTGGAGAGGTTGTCATTGTCCATCTACTGGATACGATCTTTAAAACAAACAGGCGATGTTACTCGATATGCTTGGAACCATGAAATTCAGATGTGTTTCTTCCAGCTAGTTTGACATCACATTCCCCCTGAAAGAGTTAACAGAATGAAGATAGCAAAAGCTAGTCAGACGCCAGTGCCAGTGTGCATTCTCAAACCTCCTCTTATAGAGCATCTTTGTGTGTGAAAAGTTCATTTTCTTCCATCTGTAGTTGTAGACTCGGTACTTATGTTCTATGCCAAAGCTTACCCTATTCCCTGGGATTTGAGGTCTTTGAAAACTCAAAACTCCTTGTAATAAGNTTTGNGTGGTGAACAATATCCTCCAGTAGAATCTTGGTGAAATTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5274#0 CTCTCCGCCGCACGGCCGCCTCCGCCTCCGGCTTCCTCCGCCGCCGCCTCCTCTCCGAGC 60
consensus_5274#2 ------------------------------------------------------------
consensus_5274#1 ------------------------------------------------------------
consensus_5274#0 TCGCCGGGAACGGCGCGCCACTCCCGCGCGTCGGGGCCGTGTACGCCTTCGGGGACAACA 120
consensus_5274#2 ------------------------------------------------------------
consensus_5274#1 ------------------------------------------------------------
consensus_5274#0 GCCACGGCGCGGCGGGGCAGCCGGCGCCGGCCGCCGACGTCTACGTCCCCACGCCCGTGC 180
consensus_5274#2 ------------------------------------------------------------
consensus_5274#1 ------------------------------------------------------------
consensus_5274#0 CCTCCCTCCCGACGTCCGTCGCCGCCGTCGCCGCCGGGCACTACCACTCCCTCGCGGTTT 240
consensus_5274#2 ------------------------------------------------------------
consensus_5274#1 ------------------------------------------------------------
consensus_5274#0 CCGCCGAAGGGGAGGTCTGGGCGTGGGGCCGCAACGATGAAGGTCAGCTCGGCCGCGGGC 300
consensus_5274#2 ------------------------------------------------------------
consensus_5274#1 ------------------------------------------------------------
consensus_5274#0 ACCACGCCCCGAGGAATACTTGGAGCAAGCCTGAAAAAGTGAGAGGATTGGAAAATGTTC 360
consensus_5274#2 ------------------------------------------------------------
consensus_5274#1 ------------------------------------------------------------
consensus_5274#0 AAGTCCGAGCTGTATCTGCTTGTGGGGTTGTTTCAGCAGCAATTGGGTGTGATGGCTCTT 420
consensus_5274#2 ------------------------------------------------------------
consensus_5274#1 ------------------------------------------------------------
consensus_5274#0 TATGGGTTTGGGGGAGATCAAAGCGTGGCCAACTTGGGCTTGGAAAGGACATTGTAGAGG 480
consensus_5274#2 ------------------------------------------------------------
consensus_5274#1 ------------------------------------------------------------
consensus_5274#0 CTGCAGTACCTTCTAGAGTGGAAGCACTTGCTAATTATGATATTG-TCAAGGTTCTA-AC 538
consensus_5274#2 ---------------------------------GACGAGACAAGG-GGATGGAACTGCAG 26
consensus_5274#1 --------------------------------CGGCGCGGCGGGGCAGCCGGCGCCG--G 26
* * ** *
consensus_5274#0 TTTCTCCCTGAAATTAAGTAGTCGGATGTTTGCTCCC----TTGTGAGAAAAAA--GTTG 592
consensus_5274#2 CTCCCAGCTTGGACGACCTGGCAAAGAAGACGTGCCT----GCACTAGTCGACG--GTC- 79
consensus_5274#1 CCGCCGACGTCTACGTCCCCACGCCCGTGCCCTCCCTCCCGACGTCCGTCGCCGCCGTCG 86
* * * ** * **
consensus_5274#0 TTAATTGAAGGAATG---ATGC-TAGGTATCATTTGGTCGAGTTCATTCGGT-TGCTCTC 647
consensus_5274#2 TGAATGGAGAGAGGC---CAGTGTCGGCCTCGGCTGGTCGAGTTCATTCGGT-TGCTCTC 135
consensus_5274#1 CCGCCGGGCACTACCACTCCCTCGCGGTTTCCGCCGAAGGGGAGGTCTGGGCGTGGGGCC 146
* ** ** * * * * ** ** *
consensus_5274#0 ACATCAAAGGGAGA-GGTTTGGGCATGGGGATCTGGCC----GAAACG------GCAGGC 696
consensus_5274#2 ACATCAAAGGGAGA-GGTTTGGGCATGGGGATCTGGCC----GAAACG------GCAGGC 184
consensus_5274#1 GCAACGATGAAGGTCAGCTCGGCCGCGGGCACCACGCCCCGAGGAATACTTGGAGCAAGC 206
** * * * * * * ** * *** * * *** * ** *** **
consensus_5274#0 T---AGGTTTGGGAAGCTCGATGGATG----AGCCTGAGCCTTTCCTCATCGATACCCTG 749
consensus_5274#2 T---AGGTTTGGGAAGCTCGATGGATG----AGCCTGAGCCTTTCCTCATCGATACCCTG 237
consensus_5274#1 CTGAAAAAGTGAGAGGATTGGAAAATGTTCAAGTCCGAGCTGTATCTGCTTGTGGGGTTG 266
* ** ** * * * *** ** * **** * ** * * **
consensus_5274#0 GA--AGGAGCAG--AGGTTTCACAGGTTGCTGCTGGGATGGACCATACTCTTCTATTGGT 805
consensus_5274#2 GA--AGGAGCAG--AGGTTTCACAGGTTGCTGCTGGGATGGACCATACTCTTCTATTGGT 293
consensus_5274#1 TTTCAGCAGCAATTGGGTGTGATGGCTCTTTATGGGTTTGGGGGAGATCAAAGCGTGGCC 326
** **** *** * * * * * ** *** * * * *
consensus_5274#0 TGCTGAG--TAGGCTGGGGTTTTCTTCA--CCACCGAAAGTCCTTTGATTCTTGCCGTTG 861
consensus_5274#2 TGCTGAG--TAGGCCGGGGTTTTCTTCA--CCACCGAAAGTCCTTTGATTCTTGCCGTTG 349
consensus_5274#1 AACTTGGGCTTGGAAAGGACATTGTAGAGGCTGCAGTACCTTCTAGAGTGGAAGCACTTG 386
** * * ** ** ** * * * * * * * ** * ** ***
consensus_5274#0 TCAGTGGAGAGGTTGTCATTGT-CCATCTA-CTGGATACGATCTTTAAAACAAACAGGCG 919
consensus_5274#2 TCAGTGGAGAGGTTGTCATTGT-CCATCTA-CTGGATACGATCTTTAAAACAAACAGGCG 407
consensus_5274#1 CTAATTATGATATTGTCAAGGTATCATTTGGTTGGGGACATGCTATGGCATTGACAAAGG 446
* * ** ****** ** *** * *** ** ** * * *** *
consensus_5274#0 ATG-----TTACTCGAT-----ATGCTTGGAACCATGAAATTCAGATGTGTTTCTTCCAG 969
consensus_5274#2 ATG-----TTACTCGAT-----ATGCTTGGAACCATGAAATTCAGATGTGTTTCTTCCAG 457
consensus_5274#1 ATGGAGGGTTACTTGGCTGGGGATATTCAGAAAACGGAAGGTTAGGAGAAATTGGCCATA 506
*** ***** * ** * *** *** * ** * ** *
consensus_5274#0 CTAGTTTGACATCACATTCCCCTTGAAAGAGTTAACAGAATGAAGATAGCAAAAGCTAGT 1029
consensus_5274#2 CTAGTTTGACATCACATTCCCCCTGAAAGAGTTAACAGAATGAAGATAGCAAAAGCTAGT 517
consensus_5274#1 TTACTCAGGCTTC---TTCTGCC--AAAGAATTACTTGGAAAAACA-GTTGACAAGTACT 560
** * * * ** *** * ***** *** * * ** * * * ** *
consensus_5274#0 CAGACGCCAGTGCCAGTGTGCATTCTCAAACCTCCTCTTATAGAGCATCTTTGTGTGTGA 1089
consensus_5274#2 CAGACGCCAGTGCCAGTGTGCATTCTCAAACCTCCTCTTATAGAGCATCTTTGTGTGTGA 577
consensus_5274#1 CTAGC-TCAATGCTAGAGGCCGTTGAAAAGATGGTTG----AGGAAAAAATAAGGAGTGA 615
* * ** *** ** * * ** ** * ** * * * ****
consensus_5274#0 AAAGTTCATTTTCTTCCATCTGTAGTTGTAGACTCGGTACTTA--TGTTCTATGCCAAAG 1147
consensus_5274#2 AAAGTTCATTTTCTTCCATCTGTAGTTGTAGACTCGGTACTTA--TGTTCTATGCCAAAG 635
consensus_5274#1 AGACAATATGCCCATC-ATCTGGGAACCTTCGCTTGTTCATGAAGTGTGTCATGTTGAGG 674
* * ** * ** ***** * ** * * * * *** *** * *
consensus_5274#0 CTTACCCTATTCCCTGGGATTTGAGGTCTTTGAAAACTCAAAACTCCTTGTAATAA-GTT 1206
consensus_5274#2 CTTACCCTATTCCCTGGGATTTGAGGTCTTTGAAAACTCAAAACTCCTTGTAATAA-GNT 694
consensus_5274#1 TGTCTGATGTGTCATGTGGGCTCGATCATTCTCTGGTTCTCTGCTC-TGATGGCATCGTA 733
* * * * ** * * ** ** *** * * * *
consensus_5274#0 TTGTGTGGTGAACAATATCCTCCGGCAAAATCTTGGTGAAATTTTC 1252
consensus_5274#2 TTGNGTGGTGAACAATATCCTCCAGTAGAATCTTGGTGAAATTTT- 739
consensus_5274#1 CTGAGCGGTGGAGACAACACTTACGGACAG-CTTGGCNA------- 771
** * **** * * * ** * * * ***** *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||