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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 976 fasta sequence
[GTCTACCTTTTGATGCTAAGCTCATCGTCGAGCTTGCATGATAGCTAGTGCATCATCAGCTGCAAGAAGAACAGCCAAGAACAAGAAGCTGCTGAGCTCAACAAGCTGTGTGCATGCGAGTCGATAGGGAGATGGAGAGAGGGGACGAGGCGTCGGTGAACAGGGGGTGGCTTGAGCTCAGGCTAGGCGTGAACGGCGGCGGCGGCGTTGAGACGGTGCCGGTCACGGCGGCGGACTCCTCCGCGTCCTCGGAGGCCGGCGAGGCGGACACGGTGACGCCGTCGCAGCAGCAGCAGCAGCAGCAGCAGGGTTCTCCTTCTTCTCCGGCGGCGTCGTCGGCGCCGAACAAGGTGTTCTCGTGCAACTTCTGCATGCGCAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAACGCGCACAAGCGGGAGCGCAGCGCCGCCAAGCGGACGCCGTCGTCGTCGCCGTACCACCTCCACCACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGCGTTCATGCGCGCCGCCCTCCGCGTCAACCCGGCGGGCTCGGCGATCCACAAGCAGCAGCAGCGGCGGCGGCGGTCACGCCGTGGGCGCCCGTCGCCCCACTCGCCTACGACGAGGTGCTCAGCTCGTCGGCGTCGTCGTGGCCCGGGAGCTTCAGGTTCAGAACGCAGCCTGAGCCTCCTCCCAGCTCGGAGCAGGAGCCGCCATCAGAGCAGAGTAAGAAGATAGACTTGAGCCTCAGGCTGTGATGTGAGAGATTATACTAGTAGATTATGATAGGTGATCAATTGATCATCATCATGATATAAATCCATGCATGTCCTAGGTGTAGAGCTAGCTTTTGTATTAATTAATTTGACCAGTATATAATCATCATGTGTTTGATTCTTCAGTTTGATATATAGGGATTCCAGGAAGAGATTAGTCTGCCATCAAACCTTAAAAGG]
[+] EMBL CB645625 [GTCTACCTTTTGATGCTAAGCTCATCGTCGAGCTTGCATGATAGCTAGTGCATCATCAGCTGCAAGAAGAACAGCCAAGAACAAGAAGCTGCTGAGCTCAACAAGCTGTGTGCATGCGAGTCGATAGGGAGATGGAGAGAGGGGACGAGGCGTCGGTGAACAGGGGGTGGCTTGAGCTCAGGCTAGGCGTGAACGGCGGCGGCGGCGTTGAGACGGTGCCGGTCACGGCGGCGGACTCCTCCGCGTCCTCGGAGGCCGGCGAGGCGGACACGGTGACGCCGTCGCAGCAGCAGCAGCAGCAGCAGCAGGGTTCTCCTTCTTCTCCGGCGGCGTCGTCGGCGCCGAACAAGGTGTTCTCGTGCAACTTCTGCATGCGCAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAACGCGCACAAGCGGGAGCGCAGCGCCGCCAAGCGGACGCCGTCGTCGTCGCCGTACCACCTCCACCACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGCGTTCATGCGCGCCGCCCTCCGCGTCAACCCGGCGGGCTCGGCGATCCACAAGCAGCAGCAGCGGCGGCGGCGGTCACGCCGTGGGCGCCCGTCGCCCCACTCGCCTACGACGAGGTGCTCAGCTCGTCGGCGTCGTCGTGGCCCGGGAGCTTCAGGTTCAGAACGCAGCCTGAGCCTCCTCCCAGCTCGGAGCAGGAGCCGCCATCAGAGCAGAGTAAGAAGATAGACTTGAGCCTCAGGCTGTGATGTGAGAGATTATACTAGTA ]
[-] EMBL CB645626 [ GCCGTCGCAGCAGCAGCAGCAGCAGCAGCAGGGTTTTCCTTCTTCTCCGGCGGGGTCGTCGGCGCCGAACAAGGTGTTCTCGTGCAACTTCTGCATGCGCAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAACGCGCACAAGCGGGAGCGCAGCGCCGCCAAGCGGACGCCGTCGTCGTGGCGGTACCACCTCCACCACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGGGTTCATGCGCGCCGCCCTCCGGGTCAACCCGGCGGGCTCGGCGATCCACAAGCAGCAGCAGCGGCGGCGGCGGTCACGCCGTGGGCGCCCGTCGCCCCACTCGCCTACGACGAGGTGTTCAGCTCGTCGGCGTCGTCGTGGCCCGGGAGCTTCAGGTTCAGAACGCAGCCTGAGCCTCCTCCCAGCTCGGAGCAGGAGCCGCCATCAGAGCAGAGTAAGAAGATAGCCTTGAGCCTCAGGCTGTGATGTGAGAGATTATATTAGTAGATTATGATAGGTGATCAATTGATCATCATCATGATATAAATCCATGCATGTCCTAGGTGTAGAGCTAGCTTTTGTATTAATTAATTTGACCAGTATATAATCATCATGTGTTTGATTCTTCAGTTTGATATATAGGGATTCCAGGAAGAGATTAGTCTGCCATCAAACCTTAAAAGG]
consensusID : consensus_5288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence
[TTAGAATTATTCCCTCCTCCCTACGTTACCCTGCCGGATGATTGCCCTACCCTCATCTCATCATCTCCTCCACCTATAAAGCTACCCAGCTGATGCTTCCGATACGATCGAGCCGAAGATTATCTGTCTAGTAGCTGATGCTAAGCTCATCGTCGAGCTTGCATGATAGCTAGTGCATCATCAGCTGCAAGAAGAACAGCCAAGAACAAGAAGCTGCTGAGCTCAACAAGCTGTGTGCATGCGAGTCGATAGGGAGATGGAGAGAGGGGACGAGGCGTCGGTGAACAGGGGGTGGCTTGAGCTCAGGCTAGGCGTGAACGGCGGCGGCGGCGTTGAGACGGTGCCGGTCACGGCGGCGGACTCCTCCGCGTCCTCGGAGGCCGGCGAGGCGGACACGGTGACGCCGTCGCAGCAGCAGCAGCAGCAGCAGCAGGGTTCTCCTTCTTCTCCGGCGGCGTCGTCGGCGCCGAACAAGGTGTTCTCGTGCAACTTCTGCATGCGCAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAACGCGCACAAGCGGGAGCGCAGCGCCGCCAAGCGGACGCCGTCGTCGTCGCCGTACCACCTCCACCACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGCGTTCATGCGCGCCGCCCTCCGCGTCAACCCGGCGGGCTCGG]
[+] EMBL AK059013 [TTAGAATTATTCCCTCCTCCCTACGTTACCCTGCCGGATGATTGCCCTACCCTCATCTCATCATCTCCTCCACCTATAAAGCTACCCAGCTGATGCTTCCGATACGATCGAGCCGAAGATTATCTGTCTAGTAGCTGATGCTAAGCTCATCGTCGAGCTTGCATGATAGCTAGTGCATCATCAGCTGCAAGAAGAACAGCCAAGAACAAGAAGCTGCTGAGCTCAACAAGCTGTGTGCATGCGAGTCGATAGGGAGATGGAGAGAGGGGACGAGGCGTCGGTGAACAGGGGGTGGCTTGAGCTCAGGCTAGGCGTGAACGGCGGCGGCGGCGTTGAGACGGTGCCGGTCACGGCGGCGGACTCCTCCGCGTCCTCGGAGGCCGGCGAGGCGGACACGGTGACGCCGTCGCAGCAGCAGCAGCAGCAGCAGCAGGGTTCTCCTTCTTCTCCGGCGGCGTCGTCGGCGCCGAACAAGGTGTTCTCGTGCAACTTCTGCATGCGCAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAACGCGCACAAGCGGGAGCGCAGCGCCGCCAAGCGGACGCCGTCGTCGTCGCCGTACCACCTCCACCACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGCGTTCATGCGCGCCGCCCTCCGCGTCAACCCGGCGGGCTCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5288#0 ------------------------------------------------------------
consensus_5288#1 TTAGAATTATTCCCTCCTCCCTACGTTACCCTGCCGGATGATTGCCCTACCCTCATCTCA 60
consensus_5288#0 ------------------------------------------------------------
consensus_5288#1 TCATCTCCTCCACCTATAAAGCTACCCAGCTGATGCTTCCGATACGATCGAGCCGAAGAT 120
consensus_5288#0 -----GTCTACCTTTTGATGCTAAGCTCATCGTCGAGCTTGCATGATAGCTAGTGCATCA 55
consensus_5288#1 TATCTGTCTAGTAGCTGATGCTAAGCTCATCGTCGAGCTTGCATGATAGCTAGTGCATCA 180
***** *********************************************
consensus_5288#0 TCAGCTGCAAGAAGAACAGCCAAGAACAAGAAGCTGCTGAGCTCAACAAGCTGTGTGCAT 115
consensus_5288#1 TCAGCTGCAAGAAGAACAGCCAAGAACAAGAAGCTGCTGAGCTCAACAAGCTGTGTGCAT 240
************************************************************
consensus_5288#0 GCGAGTCGATAGGGAGATGGAGAGAGGGGACGAGGCGTCGGTGAACAGGGGGTGGCTTGA 175
consensus_5288#1 GCGAGTCGATAGGGAGATGGAGAGAGGGGACGAGGCGTCGGTGAACAGGGGGTGGCTTGA 300
************************************************************
consensus_5288#0 GCTCAGGCTAGGCGTGAACGGCGGCGGCGGCGTTGAGACGGTGCCGGTCACGGCGGCGGA 235
consensus_5288#1 GCTCAGGCTAGGCGTGAACGGCGGCGGCGGCGTTGAGACGGTGCCGGTCACGGCGGCGGA 360
************************************************************
consensus_5288#0 CTCCTCCGCGTCCTCGGAGGCCGGCGAGGCGGACACGGTGACGCCGTCGCAGCAGCAGCA 295
consensus_5288#1 CTCCTCCGCGTCCTCGGAGGCCGGCGAGGCGGACACGGTGACGCCGTCGCAGCAGCAGCA 420
************************************************************
consensus_5288#0 GCAGCAGCAGCAGGGTTCTCCTTCTTCTCCGGCGGCGTCGTCGGCGCCGAACAAGGTGTT 355
consensus_5288#1 GCAGCAGCAGCAGGGTTCTCCTTCTTCTCCGGCGGCGTCGTCGGCGCCGAACAAGGTGTT 480
************************************************************
consensus_5288#0 CTCGTGCAACTTCTGCATGCGCAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAA 415
consensus_5288#1 CTCGTGCAACTTCTGCATGCGCAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAA 540
************************************************************
consensus_5288#0 CGCGCACAAGCGGGAGCGCAGCGCCGCCAAGCGGACGCCGTCGTCGTCGCCGTACCACCT 475
consensus_5288#1 CGCGCACAAGCGGGAGCGCAGCGCCGCCAAGCGGACGCCGTCGTCGTCGCCGTACCACCT 600
************************************************************
consensus_5288#0 CCACCACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGCGTT 535
consensus_5288#1 CCACCACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGCGTT 660
************************************************************
consensus_5288#0 CATGCGCGCCGCCCTCCGCGTCAACCCGGCGGGCTCGGCGATCCACAAGCAGCAGCAGCG 595
consensus_5288#1 CATGCGCGCCGCCCTCCGCGTCAACCCGGCGGGCTCGG---------------------- 698
**************************************
consensus_5288#0 GCGGCGGCGGTCACGCCGTGGGCGCCCGTCGCCCCACTCGCCTACGACGAGGTGCTCAGC 655
consensus_5288#1 ------------------------------------------------------------
consensus_5288#0 TCGTCGGCGTCGTCGTGGCCCGGGAGCTTCAGGTTCAGAACGCAGCCTGAGCCTCCTCCC 715
consensus_5288#1 ------------------------------------------------------------
consensus_5288#0 AGCTCGGAGCAGGAGCCGCCATCAGAGCAGAGTAAGAAGATAGACTTGAGCCTCAGGCTG 775
consensus_5288#1 ------------------------------------------------------------
consensus_5288#0 TGATGTGAGAGATTATACTAGTAGATTATGATAGGTGATCAATTGATCATCATCATGATA 835
consensus_5288#1 ------------------------------------------------------------
consensus_5288#0 TAAATCCATGCATGTCCTAGGTGTAGAGCTAGCTTTTGTATTAATTAATTTGACCAGTAT 895
consensus_5288#1 ------------------------------------------------------------
consensus_5288#0 ATAATCATCATGTGTTTGATTCTTCAGTTTGATATATAGGGATTCCAGGAAGAGATTAGT 955
consensus_5288#1 ------------------------------------------------------------
consensus_5288#0 CTGCCATCAAACCTTAAAAGG 976
consensus_5288#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||