These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 976 fasta sequence [GTCTACCTTTTGATGCTAAGCTCATCGTCGAGCTTGCATGATAGCTAGTGCATCATCAGCTGCAAGAAGAACAGCCAAGAACAAGAAGCTGCTGAGCTCAACAAGCTGTGTGCATGCGAGTCGATAGGGAGATGGAGAGAGGGGACGAGGCGTCGGTGAACAGGGGGTGGCTTGAGCTCAGGCTAGGCGTGAACGGCGGCGGCGGCGTTGAGACGGTGCCGGTCACGGCGGCGGACTCCTCCGCGTCCTCGGAGGCCGGCGAGGCGGACACGGTGACGCCGTCGCAGCAGCAGCAGCAGCAGCAGCAGGGTTCTCCTTCTTCTCCGGCGGCGTCGTCGGCGCCGAACAAGGTGTTCTCGTGCAACTTCTGCATGCGCAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAACGCGCACAAGCGGGAGCGCAGCGCCGCCAAGCGGACGCCGTCGTCGTCGCCGTACCACCTCCACCACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGCGTTCATGCGCGCCGCCCTCCGCGTCAACCCGGCGGGCTCGGCGATCCACAAGCAGCAGCAGCGGCGGCGGCGGTCACGCCGTGGGCGCCCGTCGCCCCACTCGCCTACGACGAGGTGCTCAGCTCGTCGGCGTCGTCGTGGCCCGGGAGCTTCAGGTTCAGAACGCAGCCTGAGCCTCCTCCCAGCTCGGAGCAGGAGCCGCCATCAGAGCAGAGTAAGAAGATAGACTTGAGCCTCAGGCTGTGATGTGAGAGATTATACTAGTAGATTATGATAGGTGATCAATTGATCATCATCATGATATAAATCCATGCATGTCCTAGGTGTAGAGCTAGCTTTTGTATTAATTAATTTGACCAGTATATAATCATCATGTGTTTGATTCTTCAGTTTGATATATAGGGATTCCAGGAAGAGATTAGTCTGCCATCAAACCTTAAAAGG] [+] EMBL CB645625 [GTCTACCTTTTGATGCTAAGCTCATCGTCGAGCTTGCATGATAGCTAGTGCATCATCAGCTGCAAGAAGAACAGCCAAGAACAAGAAGCTGCTGAGCTCAACAAGCTGTGTGCATGCGAGTCGATAGGGAGATGGAGAGAGGGGACGAGGCGTCGGTGAACAGGGGGTGGCTTGAGCTCAGGCTAGGCGTGAACGGCGGCGGCGGCGTTGAGACGGTGCCGGTCACGGCGGCGGACTCCTCCGCGTCCTCGGAGGCCGGCGAGGCGGACACGGTGACGCCGTCGCAGCAGCAGCAGCAGCAGCAGCAGGGTTCTCCTTCTTCTCCGGCGGCGTCGTCGGCGCCGAACAAGGTGTTCTCGTGCAACTTCTGCATGCGCAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAACGCGCACAAGCGGGAGCGCAGCGCCGCCAAGCGGACGCCGTCGTCGTCGCCGTACCACCTCCACCACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGCGTTCATGCGCGCCGCCCTCCGCGTCAACCCGGCGGGCTCGGCGATCCACAAGCAGCAGCAGCGGCGGCGGCGGTCACGCCGTGGGCGCCCGTCGCCCCACTCGCCTACGACGAGGTGCTCAGCTCGTCGGCGTCGTCGTGGCCCGGGAGCTTCAGGTTCAGAACGCAGCCTGAGCCTCCTCCCAGCTCGGAGCAGGAGCCGCCATCAGAGCAGAGTAAGAAGATAGACTTGAGCCTCAGGCTGTGATGTGAGAGATTATACTAGTA ] [-] EMBL CB645626 [ GCCGTCGCAGCAGCAGCAGCAGCAGCAGCAGGGTTTTCCTTCTTCTCCGGCGGGGTCGTCGGCGCCGAACAAGGTGTTCTCGTGCAACTTCTGCATGCGCAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAACGCGCACAAGCGGGAGCGCAGCGCCGCCAAGCGGACGCCGTCGTCGTGGCGGTACCACCTCCACCACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGGGTTCATGCGCGCCGCCCTCCGGGTCAACCCGGCGGGCTCGGCGATCCACAAGCAGCAGCAGCGGCGGCGGCGGTCACGCCGTGGGCGCCCGTCGCCCCACTCGCCTACGACGAGGTGTTCAGCTCGTCGGCGTCGTCGTGGCCCGGGAGCTTCAGGTTCAGAACGCAGCCTGAGCCTCCTCCCAGCTCGGAGCAGGAGCCGCCATCAGAGCAGAGTAAGAAGATAGCCTTGAGCCTCAGGCTGTGATGTGAGAGATTATATTAGTAGATTATGATAGGTGATCAATTGATCATCATCATGATATAAATCCATGCATGTCCTAGGTGTAGAGCTAGCTTTTGTATTAATTAATTTGACCAGTATATAATCATCATGTGTTTGATTCTTCAGTTTGATATATAGGGATTCCAGGAAGAGATTAGTCTGCCATCAAACCTTAAAAGG] consensusID : consensus_5288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [TTAGAATTATTCCCTCCTCCCTACGTTACCCTGCCGGATGATTGCCCTACCCTCATCTCATCATCTCCTCCACCTATAAAGCTACCCAGCTGATGCTTCCGATACGATCGAGCCGAAGATTATCTGTCTAGTAGCTGATGCTAAGCTCATCGTCGAGCTTGCATGATAGCTAGTGCATCATCAGCTGCAAGAAGAACAGCCAAGAACAAGAAGCTGCTGAGCTCAACAAGCTGTGTGCATGCGAGTCGATAGGGAGATGGAGAGAGGGGACGAGGCGTCGGTGAACAGGGGGTGGCTTGAGCTCAGGCTAGGCGTGAACGGCGGCGGCGGCGTTGAGACGGTGCCGGTCACGGCGGCGGACTCCTCCGCGTCCTCGGAGGCCGGCGAGGCGGACACGGTGACGCCGTCGCAGCAGCAGCAGCAGCAGCAGCAGGGTTCTCCTTCTTCTCCGGCGGCGTCGTCGGCGCCGAACAAGGTGTTCTCGTGCAACTTCTGCATGCGCAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAACGCGCACAAGCGGGAGCGCAGCGCCGCCAAGCGGACGCCGTCGTCGTCGCCGTACCACCTCCACCACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGCGTTCATGCGCGCCGCCCTCCGCGTCAACCCGGCGGGCTCGG] [+] EMBL AK059013 [TTAGAATTATTCCCTCCTCCCTACGTTACCCTGCCGGATGATTGCCCTACCCTCATCTCATCATCTCCTCCACCTATAAAGCTACCCAGCTGATGCTTCCGATACGATCGAGCCGAAGATTATCTGTCTAGTAGCTGATGCTAAGCTCATCGTCGAGCTTGCATGATAGCTAGTGCATCATCAGCTGCAAGAAGAACAGCCAAGAACAAGAAGCTGCTGAGCTCAACAAGCTGTGTGCATGCGAGTCGATAGGGAGATGGAGAGAGGGGACGAGGCGTCGGTGAACAGGGGGTGGCTTGAGCTCAGGCTAGGCGTGAACGGCGGCGGCGGCGTTGAGACGGTGCCGGTCACGGCGGCGGACTCCTCCGCGTCCTCGGAGGCCGGCGAGGCGGACACGGTGACGCCGTCGCAGCAGCAGCAGCAGCAGCAGCAGGGTTCTCCTTCTTCTCCGGCGGCGTCGTCGGCGCCGAACAAGGTGTTCTCGTGCAACTTCTGCATGCGCAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAACGCGCACAAGCGGGAGCGCAGCGCCGCCAAGCGGACGCCGTCGTCGTCGCCGTACCACCTCCACCACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGCGTTCATGCGCGCCGCCCTCCGCGTCAACCCGGCGGGCTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5288#0 ------------------------------------------------------------ consensus_5288#1 TTAGAATTATTCCCTCCTCCCTACGTTACCCTGCCGGATGATTGCCCTACCCTCATCTCA 60 consensus_5288#0 ------------------------------------------------------------ consensus_5288#1 TCATCTCCTCCACCTATAAAGCTACCCAGCTGATGCTTCCGATACGATCGAGCCGAAGAT 120 consensus_5288#0 -----GTCTACCTTTTGATGCTAAGCTCATCGTCGAGCTTGCATGATAGCTAGTGCATCA 55 consensus_5288#1 TATCTGTCTAGTAGCTGATGCTAAGCTCATCGTCGAGCTTGCATGATAGCTAGTGCATCA 180 ***** ********************************************* consensus_5288#0 TCAGCTGCAAGAAGAACAGCCAAGAACAAGAAGCTGCTGAGCTCAACAAGCTGTGTGCAT 115 consensus_5288#1 TCAGCTGCAAGAAGAACAGCCAAGAACAAGAAGCTGCTGAGCTCAACAAGCTGTGTGCAT 240 ************************************************************ consensus_5288#0 GCGAGTCGATAGGGAGATGGAGAGAGGGGACGAGGCGTCGGTGAACAGGGGGTGGCTTGA 175 consensus_5288#1 GCGAGTCGATAGGGAGATGGAGAGAGGGGACGAGGCGTCGGTGAACAGGGGGTGGCTTGA 300 ************************************************************ consensus_5288#0 GCTCAGGCTAGGCGTGAACGGCGGCGGCGGCGTTGAGACGGTGCCGGTCACGGCGGCGGA 235 consensus_5288#1 GCTCAGGCTAGGCGTGAACGGCGGCGGCGGCGTTGAGACGGTGCCGGTCACGGCGGCGGA 360 ************************************************************ consensus_5288#0 CTCCTCCGCGTCCTCGGAGGCCGGCGAGGCGGACACGGTGACGCCGTCGCAGCAGCAGCA 295 consensus_5288#1 CTCCTCCGCGTCCTCGGAGGCCGGCGAGGCGGACACGGTGACGCCGTCGCAGCAGCAGCA 420 ************************************************************ consensus_5288#0 GCAGCAGCAGCAGGGTTCTCCTTCTTCTCCGGCGGCGTCGTCGGCGCCGAACAAGGTGTT 355 consensus_5288#1 GCAGCAGCAGCAGGGTTCTCCTTCTTCTCCGGCGGCGTCGTCGGCGCCGAACAAGGTGTT 480 ************************************************************ consensus_5288#0 CTCGTGCAACTTCTGCATGCGCAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAA 415 consensus_5288#1 CTCGTGCAACTTCTGCATGCGCAAGTTCTTCAGCTCGCAGGCGCTGGGCGGGCACCAGAA 540 ************************************************************ consensus_5288#0 CGCGCACAAGCGGGAGCGCAGCGCCGCCAAGCGGACGCCGTCGTCGTCGCCGTACCACCT 475 consensus_5288#1 CGCGCACAAGCGGGAGCGCAGCGCCGCCAAGCGGACGCCGTCGTCGTCGCCGTACCACCT 600 ************************************************************ consensus_5288#0 CCACCACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGCGTT 535 consensus_5288#1 CCACCACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGCGTT 660 ************************************************************ consensus_5288#0 CATGCGCGCCGCCCTCCGCGTCAACCCGGCGGGCTCGGCGATCCACAAGCAGCAGCAGCG 595 consensus_5288#1 CATGCGCGCCGCCCTCCGCGTCAACCCGGCGGGCTCGG---------------------- 698 ************************************** consensus_5288#0 GCGGCGGCGGTCACGCCGTGGGCGCCCGTCGCCCCACTCGCCTACGACGAGGTGCTCAGC 655 consensus_5288#1 ------------------------------------------------------------ consensus_5288#0 TCGTCGGCGTCGTCGTGGCCCGGGAGCTTCAGGTTCAGAACGCAGCCTGAGCCTCCTCCC 715 consensus_5288#1 ------------------------------------------------------------ consensus_5288#0 AGCTCGGAGCAGGAGCCGCCATCAGAGCAGAGTAAGAAGATAGACTTGAGCCTCAGGCTG 775 consensus_5288#1 ------------------------------------------------------------ consensus_5288#0 TGATGTGAGAGATTATACTAGTAGATTATGATAGGTGATCAATTGATCATCATCATGATA 835 consensus_5288#1 ------------------------------------------------------------ consensus_5288#0 TAAATCCATGCATGTCCTAGGTGTAGAGCTAGCTTTTGTATTAATTAATTTGACCAGTAT 895 consensus_5288#1 ------------------------------------------------------------ consensus_5288#0 ATAATCATCATGTGTTTGATTCTTCAGTTTGATATATAGGGATTCCAGGAAGAGATTAGT 955 consensus_5288#1 ------------------------------------------------------------ consensus_5288#0 CTGCCATCAAACCTTAAAAGG 976 consensus_5288#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||