cluster # 5289

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Oryza sativa
cluster # 5289 cluster # 5289 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5289#0 length = 589 sequences # 2

consensus_5289#1 length = 578 sequences # 1

consensusID : consensus_5289#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 589
fasta sequence

                              [AATCTCAATACAATGCNGGTTGTTGGANCNGTGGGGTTCATGGNCCACAGGTTGGACATTCCAAGCGNTNTTGATCCTCATTGGGCGTCGATGATCGAGAGTTNCTGGGACAGTGACCCGCAGCNTCGCCCTTCGTTCCAAGAACTGCTAGATCAGCTCCGAGATCTGCAGAAGCAATACAACTTGCAGGCTCAACTGCAGCGAACTGCAGCTGCCAAGATGAGTNTTGNCGATTGCTAACTTCAAAATCTGAATGGTCCATGTTCAGCTTGTTGCCAATATGNGGTCCCAGCAGGCCAGCAAAATGGGATTCGTTAGGAGTCCNGTCTAACCAAAAAGGGTTCTGAATTCTGAACATTTTGCTNCTTTTCTGAAGAAGCTGTGGCAGCAATTGAGTTTGTGCCAGAAAAAGATGGTGCATTCGATCTGAAGCCTGAAGCTCTGCAACTGCAATTCAATCAATCTTCCAGCNGTGATGACCGATGAAATTTCGGCAGTCATCGAATACAATGCTGTATTCACCCTATTAACCATGTACATGATTTTTTTTAAAAAGAAAAGGTTGTTGTTGGTNTTCTGCAAAAAAAAA]

[+] EMBL AU030126             [AATCTCAATACAATGCNGGTTGTTGGANCNGTGGGGTTCATGGNCCACAGGTTGGACATTCCAAGCGNTNTTGATCCTCATTGGGCGTCGATGATCGAGAGTTNCTGGGACAGTGACCCGCAGCNTCGCCCTTCGTTCCAAGAACTGCTAGATCAGCTCCGAGATCTGCAGAAGCAATACAACTTGCAGGCTCAACTGCAGCGAACTGCAGCTGCCAAGATGAGTNTTGNCGATTGCTAACTTCAAAATCTGAATGGTCCATGTTCAGCTTGTTGCCAATATGNGGTCCCAGCAGGCCAGCAAAATGGGATTCGTTAGGAGTCCNGTCTAACCAAAAAGGGTTCTGAATTCTGAACATTTTGCTNCTTTTCTGAAGAAGCTGTGGCAGCAATTGAGTTTGTGCCAGAAAAAGATGGTGCATTCGATCTGAAGCCTGAAGCTCTGCAACTGCAATTCAATCAATCTTCCAGCNGTGATGACCGATGAAATTTCGGCAGTCATCGAATACAATGCTGTATTCACCCTATTAACCATGTACATGATTTTTTTTAAAAAGAAAAGGTTGTTGTTGGTNTTCTGCAAAAAAAAA]
[+] EMBL AU030125             [     CAATACAATGCAGGTTGTTGGAGCAGTGGGGTTCATGGACCACAGGTTGGACATTCCAAGCGATGTTGATCCTCATTGGGCGTCGATGATCGAGAGTTGCTGGGACAGTGACCCGCAGCGTCGCCCTTCGTTCCAAGAACNGCTAGATCAGCTCCGAGATCTGCAGAAGCAATACAACTTGCAGGCTCAACTGCAGCGAACTGCAGCTGCCAAGATGAGTGTTGACGATTGCTAACTTCAAAATCTGAATGGTCCATGTTCAGCTTGTTGCCAATATGAGGTCCCAGCAGGCCAGCAAAATGGGATTCGTANGGAGTCCAGTCTAACCAAAANGGG TCTG ATTCTGAACATTTTGC ACTTTCCTGAAG ANCTGTGGCAGCAtt                                                                                                                                                                                                     ]




>consensus_5289#0
AATCTCAATACAATGCNGGTTGTTGGANCNGTGGGGTTCATGGNCCACAGGTTGGACATT
CCAAGCGNTNTTGATCCTCATTGGGCGTCGATGATCGAGAGTTNCTGGGACAGTGACCCG
CAGCNTCGCCCTTCGTTCCAAGAACTGCTAGATCAGCTCCGAGATCTGCAGAAGCAATAC
AACTTGCAGGCTCAACTGCAGCGAACTGCAGCTGCCAAGATGAGTNTTGNCGATTGCTAA
CTTCAAAATCTGAATGGTCCATGTTCAGCTTGTTGCCAATATGNGGTCCCAGCAGGCCAG
CAAAATGGGATTCGTTAGGAGTCCNGTCTAACCAAAAAGGGTTCTGAATTCTGAACATTT
TGCTNCTTTTCTGAAGAAGCTGTGGCAGCAATTGAGTTTGTGCCAGAAAAAGATGGTGCA
TTCGATCTGAAGCCTGAAGCTCTGCAACTGCAATTCAATCAATCTTCCAGCNGTGATGAC
CGATGAAATTTCGGCAGTCATCGAATACAATGCTGTATTCACCCTATTAACCATGTACAT
GATTTTTTTTAAAAAGAAAAGGTTGTTGTTGGTNTTCTGCAAAAAAAAA

consensusID : consensus_5289#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence

                              [GCCACAATGGATGGCTCCAGAGGTTGTTGGAGCAGTGGGGTTCATGGACCACAGGTTTGGACATTCCAAGCGATGTTGATCCTCATTGGGCGTCGATGATCTAGAGTTGCTGGGACAGTGACCCGCAGCGTCGCCCTTCGTTCCAAGAACTGCTAGATCATCTCCAACATCTGCATAAGCAATACAACTTGCATGCTCAACTGCAGCGAACTGCATCTGCCAAGATGATTGTTGACAATTGCTAACTTCAAAATCTGAATGGTCCATGTTCATCTTGTTGCCAATATGATGTCCCATCACGCCATCAAAATGGGATTCGATATGAGTCCAGTCTAACCAAAAAGGGTTCTGAATTCTGAACATTTTGCTACTTTTCTGAAGAACCTGTGGCAGCAATTGAGTTTGTGCCAAAAAAAGATGGTGCATTCGATCTGAACCCTGAAGCTCTGCAACTGCAATTCAATCAATCTTCCAACAGTGATGACCGATGAAATTTCGGCAGTCATCTAATACAATGCTGTATTCACCCTATTAACCATGTACATGATTTTTTTTAAAAAGAAAAGGTTGTTGTTGGT]

[+] EMBL CB679016             [GCCACAATGGATGGCTCCAGAGGTTGTTGGAGCAGTGGGGTTCATGGACCACAGGTTTGGACATTCCAAGCGATGTTGATCCTCATTGGGCGTCGATGATCTAGAGTTGCTGGGACAGTGACCCGCAGCGTCGCCCTTCGTTCCAAGAACTGCTAGATCATCTCCAACATCTGCATAAGCAATACAACTTGCATGCTCAACTGCAGCGAACTGCATCTGCCAAGATGATTGTTGACAATTGCTAACTTCAAAATCTGAATGGTCCATGTTCATCTTGTTGCCAATATGATGTCCCATCACGCCATCAAAATGGGATTCGATATGAGTCCAGTCTAACCAAAAAGGGTTCTGAATTCTGAACATTTTGCTACTTTTCTGAAGAACCTGTGGCAGCAATTGAGTTTGTGCCAAAAAAAGATGGTGCATTCGATCTGAACCCTGAAGCTCTGCAACTGCAATTCAATCAATCTTCCAACAGTGATGACCGATGAAATTTCGGCAGTCATCTAATACAATGCTGTATTCACCCTATTAACCATGTACATGATTTTTTTTAAAAAGAAAAGGTTGTTGTTGGT]




>consensus_5289#1
GCCACAATGGATGGCTCCAGAGGTTGTTGGAGCAGTGGGGTTCATGGACCACAGGTTTGG
ACATTCCAAGCGATGTTGATCCTCATTGGGCGTCGATGATCTAGAGTTGCTGGGACAGTG
ACCCGCAGCGTCGCCCTTCGTTCCAAGAACTGCTAGATCATCTCCAACATCTGCATAAGC
AATACAACTTGCATGCTCAACTGCAGCGAACTGCATCTGCCAAGATGATTGTTGACAATT
GCTAACTTCAAAATCTGAATGGTCCATGTTCATCTTGTTGCCAATATGATGTCCCATCAC
GCCATCAAAATGGGATTCGATATGAGTCCAGTCTAACCAAAAAGGGTTCTGAATTCTGAA
CATTTTGCTACTTTTCTGAAGAACCTGTGGCAGCAATTGAGTTTGTGCCAAAAAAAGATG
GTGCATTCGATCTGAACCCTGAAGCTCTGCAACTGCAATTCAATCAATCTTCCAACAGTG
ATGACCGATGAAATTTCGGCAGTCATCTAATACAATGCTGTATTCACCCTATTAACCATG
TACATGATTTTTTTTAAAAAGAAAAGGTTGTTGTTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5289#0      AATCTCAATACAATGCN-----GGTTGTTGGANCNGTGGGGTTCATGGNCCACAGGTT-G 54
consensus_5289#1      -GCCACAATGGATGGCTCCAGAGGTTGTTGGAGCAGTGGGGTTCATGGACCACAGGTTTG 59
                         * ****  *  **      ********** * ************* ********* *

consensus_5289#0      GACATTCCAAGCGNTNTTGATCCTCATTGGGCGTCGATGATCGAGAGTTNCTGGGACAGT 114
consensus_5289#1      GACATTCCAAGCGATGTTGATCCTCATTGGGCGTCGATGATCTAGAGTTGCTGGGACAGT 119
                      ************* * ************************** ****** **********

consensus_5289#0      GACCCGCAGCNTCGCCCTTCGTTCCAAGAACTGCTAGATCAGCTCCGAGATCTGCAGAAG 174
consensus_5289#1      GACCCGCAGCGTCGCCCTTCGTTCCAAGAACTGCTAGATCATCTCCAACATCTGCATAAG 179
                      ********** ****************************** **** * ******* ***

consensus_5289#0      CAATACAACTTGCAGGCTCAACTGCAGCGAACTGCAGCTGCCAAGATGAGTNTTGNCGAT 234
consensus_5289#1      CAATACAACTTGCATGCTCAACTGCAGCGAACTGCATCTGCCAAGATGATTGTTGACAAT 239
                      ************** ********************* ************ * *** * **

consensus_5289#0      TGCTAACTTCAAAATCTGAATGGTCCATGTTCAGCTTGTTGCCAATATGNGGTCCCAGCA 294
consensus_5289#1      TGCTAACTTCAAAATCTGAATGGTCCATGTTCATCTTGTTGCCAATATGATGTCCCATCA 299
                      ********************************* ***************  ****** **

consensus_5289#0      GGCCAGCAAAATGGGATTCGTTAGGAGTCCNGTCTAACCAAAAAGGGTTCTGAATTCTGA 354
consensus_5289#1      CGCCATCAAAATGGGATTCGATATGAGTCCAGTCTAACCAAAAAGGGTTCTGAATTCTGA 359
                       **** ************** ** ****** *****************************

consensus_5289#0      ACATTTTGCTNCTTTTCTGAAGAAGCTGTGGCAGCAATTGAGTTTGTGCCAGAAAAAGAT 414
consensus_5289#1      ACATTTTGCTACTTTTCTGAAGAACCTGTGGCAGCAATTGAGTTTGTGCCAAAAAAAGAT 419
                      ********** ************* ************************** ********

consensus_5289#0      GGTGCATTCGATCTGAAGCCTGAAGCTCTGCAACTGCAATTCAATCAATCTTCCAGCNGT 474
consensus_5289#1      GGTGCATTCGATCTGAACCCTGAAGCTCTGCAACTGCAATTCAATCAATCTTCCAACAGT 479
                      ***************** ************************************* * **

consensus_5289#0      GATGACCGATGAAATTTCGGCAGTCATCGAATACAATGCTGTATTCACCCTATTAACCAT 534
consensus_5289#1      GATGACCGATGAAATTTCGGCAGTCATCTAATACAATGCTGTATTCACCCTATTAACCAT 539
                      **************************** *******************************

consensus_5289#0      GTACATGATTTTTTTTAAAAAGAAAAGGTTGTTGTTGGTNTTCTGCAAAAAAAAA 589
consensus_5289#1      GTACATGATTTTTTTTAAAAAGAAAAGGTTGTTGTTGGT---------------- 578
                      ***************************************