cluster # 5291

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Oryza sativa
cluster # 5291 cluster # 5291 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5291#0 length = 1100 sequences # 1

consensus_5291#1 length = 438 sequences # 2

consensusID : consensus_5291#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1100
fasta sequence

                              [TCCTGCGACCTCGTCGACGTCGATCCCCCCGAGCTCCAGTTCCCCTTCGAGCTCGACAAGCAGATCTCCTGCCCCCTCAGGATCGCCAACAAGACCGAGAGGACGGTCGCGTTTAAGGTTAAGACGACGAGCCCCAAGAAGTACTGCGTGCGCCCCAATAATGGCGTCGTGCGGCCGCGATCCGCCTCCGTCGTTGTAGTCACGATGCAAGCGCAGATTGTGGCGCCTCCGGACTTGCAGTGCAAGGACAAGTTCTTGGTGCAGAGCGTGGTCGTCGACGATGGCTTGTCAGCTAAGGACATCACCTCTCAAATGTTCCTGAGAGATGAGAACAACATGGTTGAGGAGGTGAAGCTTAAGGTTTCTTATGTGATGCCACCTGAACCAGCGATGGAGATTGCAGAGGAGTCTGATATTCCAAAGAGAATTTTGGTGCCTATGCGGCGGATTTTGGATAATGGGAGGAGTGGTTCGGAGCTGTCAAGTGGTAATGTCTCATTGAGATCAGCTGAGATGGGGACAGAGTTGGGATCACCTCTTGGACGATTTGTGAGAAATGAGGATATGCTGAAGACTGCAAGTCCTGTTGTTGAAACAAGAGTACATGCAGGACCTGATGAACAATACCTCGAGCTGTCCGCTTTGGTTGCAAAATTGACCGAAGAAAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGTGATCATCTTTGTCAACCCCATGTTGGTGGGCATAAATATGCAGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTCTACAGTAAATAAAAAGGTGACGTCGTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACTGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTCGTAGTGGTAATCTAGCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGT]

[+] EMBL AK058656             [TCCTGCGACCTCGTCGACGTCGATCCCCCCGAGCTCCAGTTCCCCTTCGAGCTCGACAAGCAGATCTCCTGCCCCCTCAGGATCGCCAACAAGACCGAGAGGACGGTCGCGTTTAAGGTTAAGACGACGAGCCCCAAGAAGTACTGCGTGCGCCCCAATAATGGCGTCGTGCGGCCGCGATCCGCCTCCGTCGTTGTAGTCACGATGCAAGCGCAGATTGTGGCGCCTCCGGACTTGCAGTGCAAGGACAAGTTCTTGGTGCAGAGCGTGGTCGTCGACGATGGCTTGTCAGCTAAGGACATCACCTCTCAAATGTTCCTGAGAGATGAGAACAACATGGTTGAGGAGGTGAAGCTTAAGGTTTCTTATGTGATGCCACCTGAACCAGCGATGGAGATTGCAGAGGAGTCTGATATTCCAAAGAGAATTTTGGTGCCTATGCGGCGGATTTTGGATAATGGGAGGAGTGGTTCGGAGCTGTCAAGTGGTAATGTCTCATTGAGATCAGCTGAGATGGGGACAGAGTTGGGATCACCTCTTGGACGATTTGTGAGAAATGAGGATATGCTGAAGACTGCAAGTCCTGTTGTTGAAACAAGAGTACATGCAGGACCTGATGAACAATACCTCGAGCTGTCCGCTTTGGTTGCAAAATTGACCGAAGAAAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGTGATCATCTTTGTCAACCCCATGTTGGTGGGCATAAATATGCAGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTCTACAGTAAATAAAAAGGTGACGTCGTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACTGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTCGTAGTGGTAATCTAGCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGT]




>consensus_5291#0
TCCTGCGACCTCGTCGACGTCGATCCCCCCGAGCTCCAGTTCCCCTTCGAGCTCGACAAG
CAGATCTCCTGCCCCCTCAGGATCGCCAACAAGACCGAGAGGACGGTCGCGTTTAAGGTT
AAGACGACGAGCCCCAAGAAGTACTGCGTGCGCCCCAATAATGGCGTCGTGCGGCCGCGA
TCCGCCTCCGTCGTTGTAGTCACGATGCAAGCGCAGATTGTGGCGCCTCCGGACTTGCAG
TGCAAGGACAAGTTCTTGGTGCAGAGCGTGGTCGTCGACGATGGCTTGTCAGCTAAGGAC
ATCACCTCTCAAATGTTCCTGAGAGATGAGAACAACATGGTTGAGGAGGTGAAGCTTAAG
GTTTCTTATGTGATGCCACCTGAACCAGCGATGGAGATTGCAGAGGAGTCTGATATTCCA
AAGAGAATTTTGGTGCCTATGCGGCGGATTTTGGATAATGGGAGGAGTGGTTCGGAGCTG
TCAAGTGGTAATGTCTCATTGAGATCAGCTGAGATGGGGACAGAGTTGGGATCACCTCTT
GGACGATTTGTGAGAAATGAGGATATGCTGAAGACTGCAAGTCCTGTTGTTGAAACAAGA
GTACATGCAGGACCTGATGAACAATACCTCGAGCTGTCCGCTTTGGTTGCAAAATTGACC
GAAGAAAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGTGATCATCT
TTGTCAACCCCATGTTGGTGGGCATAAATATGCAGGAGCTTGCAAGGCGTCAAGCCAGTC
AACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTC
TGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTCTACA
GTAAATAAAAAGGTGACGTCGTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATG
CAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACTGTTTACAAGTGTCCGATGGACAA
AAAAGGGTGGTGTTTGTGTGGCGTCGTAGTGGTAATCTAGCTTGATCCATGATGTATTTT
TAAACTAATCATTGGAAAGT

consensusID : consensus_5291#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 438
fasta sequence

                              [AAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTTCTACAGTAAATAAAGAGGTGACGTCGTTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTTGTAGTGGTAATCTATCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTGTGGTTTTCCAGTATTAGATTTTCTTAAT]

[-] EMBL BI306032             [AAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTTCTACAGTAAATAAAGAGGTGACGTCGTTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTTGTAGTGGTAATCTATCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTGTGGTTTTCCAGTATTAGATTTTCTTAAT]
[-] EMBL CB966426             [          GCACTTGAGCCAAATAGGAAACTTCGAGAGGAGCTGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTTCTACAGTAAATAAAGAGGTGACGTCGTTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTTGTAGTGGTAATCTATCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTGTGGTTTT CAGTATTAGATTTTCTTAAT]




>consensus_5291#1
AAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGGAGCTTGCAAGGCG
TCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACT
TAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAG
ATAATTTCTACAGTAAATAAAGAGGTGACGTCGTTGGGGATGCTTAGTTTTGTTGGTCAG
CTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACAAGTGTCCGAT
GGACAAAAAAGGGTGGTGTTTGTGTGGCGTTGTAGTGGTAATCTATCTTGATCCATGATG
TATTTTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTGTGGTTTTCCA
GTATTAGATTTTCTTAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5291#0      TCCTGCGACCTCGTCGACGTCGATCCCCCCGAGCTCCAGTTCCCCTTCGAGCTCGACAAG 60
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      CAGATCTCCTGCCCCCTCAGGATCGCCAACAAGACCGAGAGGACGGTCGCGTTTAAGGTT 120
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      AAGACGACGAGCCCCAAGAAGTACTGCGTGCGCCCCAATAATGGCGTCGTGCGGCCGCGA 180
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      TCCGCCTCCGTCGTTGTAGTCACGATGCAAGCGCAGATTGTGGCGCCTCCGGACTTGCAG 240
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      TGCAAGGACAAGTTCTTGGTGCAGAGCGTGGTCGTCGACGATGGCTTGTCAGCTAAGGAC 300
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      ATCACCTCTCAAATGTTCCTGAGAGATGAGAACAACATGGTTGAGGAGGTGAAGCTTAAG 360
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      GTTTCTTATGTGATGCCACCTGAACCAGCGATGGAGATTGCAGAGGAGTCTGATATTCCA 420
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      AAGAGAATTTTGGTGCCTATGCGGCGGATTTTGGATAATGGGAGGAGTGGTTCGGAGCTG 480
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      TCAAGTGGTAATGTCTCATTGAGATCAGCTGAGATGGGGACAGAGTTGGGATCACCTCTT 540
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      GGACGATTTGTGAGAAATGAGGATATGCTGAAGACTGCAAGTCCTGTTGTTGAAACAAGA 600
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      GTACATGCAGGACCTGATGAACAATACCTCGAGCTGTCCGCTTTGGTTGCAAAATTGACC 660
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      GAAGAAAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGTGATCATCT 720
consensus_5291#1      -----AAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTG--------- 46
                           **********************************************         

consensus_5291#0      TTGTCAACCCCATGTTGGTGGGCATAAATATGCAGGAGCTTGCAAGGCGTCAAGCCAGTC 780
consensus_5291#1      -----------------------------------GAGCTTGCAAGGCGTCAAGCCAGTC 71
                                                         *************************

consensus_5291#0      AACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTC 840
consensus_5291#1      AACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTC 131
                      ************************************************************

consensus_5291#0      TGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATT-CTAC 899
consensus_5291#1      TGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTTCTAC 191
                      ******************************************************* ****

consensus_5291#0      AGTAAATAAAAAGGTGACGTCGT-GGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGA 958
consensus_5291#1      AGTAAATAAAGAGGTGACGTCGTTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGA 251
                      ********** ************ ************************************

consensus_5291#0      TGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACTGTTTACAAGTGTCCGATGGAC 1018
consensus_5291#1      TGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTAC-------AAGTGTCCGATGGAC 304
                      **************************************       ***************

consensus_5291#0      AAAAAAGGGTGGTGTTTGTGTGGCGTCGTAGTGGTAATCTAGCTTGATCCATGATGTATT 1078
consensus_5291#1      AAAAAAGGGTGGTGTTTGTGTGGCGTTGTAGTGGTAATCTATCTTGATCCATGATGTATT 364
                      ************************** ************** ******************

consensus_5291#0      TTTAAACTAATCATTGGAAAGT-------------------------------------- 1100
consensus_5291#1      TTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTGTGGTTTTCCAGTAT 424
                      **********************                                      

consensus_5291#0      --------------
consensus_5291#1      TAGATTTTCTTAAT 438