Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5291 cluster # 5291       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5291#0 length = 1100 sequences # 1  
consensus_5291#1 length = 438 sequences # 2  

consensusID : consensus_5291#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1100
fasta sequence
                              [TCCTGCGACCTCGTCGACGTCGATCCCCCCGAGCTCCAGTTCCCCTTCGAGCTCGACAAGCAGATCTCCTGCCCCCTCAGGATCGCCAACAAGACCGAGAGGACGGTCGCGTTTAAGGTTAAGACGACGAGCCCCAAGAAGTACTGCGTGCGCCCCAATAATGGCGTCGTGCGGCCGCGATCCGCCTCCGTCGTTGTAGTCACGATGCAAGCGCAGATTGTGGCGCCTCCGGACTTGCAGTGCAAGGACAAGTTCTTGGTGCAGAGCGTGGTCGTCGACGATGGCTTGTCAGCTAAGGACATCACCTCTCAAATGTTCCTGAGAGATGAGAACAACATGGTTGAGGAGGTGAAGCTTAAGGTTTCTTATGTGATGCCACCTGAACCAGCGATGGAGATTGCAGAGGAGTCTGATATTCCAAAGAGAATTTTGGTGCCTATGCGGCGGATTTTGGATAATGGGAGGAGTGGTTCGGAGCTGTCAAGTGGTAATGTCTCATTGAGATCAGCTGAGATGGGGACAGAGTTGGGATCACCTCTTGGACGATTTGTGAGAAATGAGGATATGCTGAAGACTGCAAGTCCTGTTGTTGAAACAAGAGTACATGCAGGACCTGATGAACAATACCTCGAGCTGTCCGCTTTGGTTGCAAAATTGACCGAAGAAAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGTGATCATCTTTGTCAACCCCATGTTGGTGGGCATAAATATGCAGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTCTACAGTAAATAAAAAGGTGACGTCGTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACTGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTCGTAGTGGTAATCTAGCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGT]

[+] EMBL AK058656             [TCCTGCGACCTCGTCGACGTCGATCCCCCCGAGCTCCAGTTCCCCTTCGAGCTCGACAAGCAGATCTCCTGCCCCCTCAGGATCGCCAACAAGACCGAGAGGACGGTCGCGTTTAAGGTTAAGACGACGAGCCCCAAGAAGTACTGCGTGCGCCCCAATAATGGCGTCGTGCGGCCGCGATCCGCCTCCGTCGTTGTAGTCACGATGCAAGCGCAGATTGTGGCGCCTCCGGACTTGCAGTGCAAGGACAAGTTCTTGGTGCAGAGCGTGGTCGTCGACGATGGCTTGTCAGCTAAGGACATCACCTCTCAAATGTTCCTGAGAGATGAGAACAACATGGTTGAGGAGGTGAAGCTTAAGGTTTCTTATGTGATGCCACCTGAACCAGCGATGGAGATTGCAGAGGAGTCTGATATTCCAAAGAGAATTTTGGTGCCTATGCGGCGGATTTTGGATAATGGGAGGAGTGGTTCGGAGCTGTCAAGTGGTAATGTCTCATTGAGATCAGCTGAGATGGGGACAGAGTTGGGATCACCTCTTGGACGATTTGTGAGAAATGAGGATATGCTGAAGACTGCAAGTCCTGTTGTTGAAACAAGAGTACATGCAGGACCTGATGAACAATACCTCGAGCTGTCCGCTTTGGTTGCAAAATTGACCGAAGAAAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGTGATCATCTTTGTCAACCCCATGTTGGTGGGCATAAATATGCAGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTCTACAGTAAATAAAAAGGTGACGTCGTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACTGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTCGTAGTGGTAATCTAGCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGT]


>consensus_5291#0 TCCTGCGACCTCGTCGACGTCGATCCCCCCGAGCTCCAGTTCCCCTTCGAGCTCGACAAG CAGATCTCCTGCCCCCTCAGGATCGCCAACAAGACCGAGAGGACGGTCGCGTTTAAGGTT AAGACGACGAGCCCCAAGAAGTACTGCGTGCGCCCCAATAATGGCGTCGTGCGGCCGCGA TCCGCCTCCGTCGTTGTAGTCACGATGCAAGCGCAGATTGTGGCGCCTCCGGACTTGCAG TGCAAGGACAAGTTCTTGGTGCAGAGCGTGGTCGTCGACGATGGCTTGTCAGCTAAGGAC ATCACCTCTCAAATGTTCCTGAGAGATGAGAACAACATGGTTGAGGAGGTGAAGCTTAAG GTTTCTTATGTGATGCCACCTGAACCAGCGATGGAGATTGCAGAGGAGTCTGATATTCCA AAGAGAATTTTGGTGCCTATGCGGCGGATTTTGGATAATGGGAGGAGTGGTTCGGAGCTG TCAAGTGGTAATGTCTCATTGAGATCAGCTGAGATGGGGACAGAGTTGGGATCACCTCTT GGACGATTTGTGAGAAATGAGGATATGCTGAAGACTGCAAGTCCTGTTGTTGAAACAAGA GTACATGCAGGACCTGATGAACAATACCTCGAGCTGTCCGCTTTGGTTGCAAAATTGACC GAAGAAAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGTGATCATCT TTGTCAACCCCATGTTGGTGGGCATAAATATGCAGGAGCTTGCAAGGCGTCAAGCCAGTC AACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTC TGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTCTACA GTAAATAAAAAGGTGACGTCGTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATG CAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACTGTTTACAAGTGTCCGATGGACAA AAAAGGGTGGTGTTTGTGTGGCGTCGTAGTGGTAATCTAGCTTGATCCATGATGTATTTT TAAACTAATCATTGGAAAGT



consensusID : consensus_5291#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 438
fasta sequence
                              [AAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTTCTACAGTAAATAAAGAGGTGACGTCGTTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTTGTAGTGGTAATCTATCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTGTGGTTTTCCAGTATTAGATTTTCTTAAT]

[-] EMBL BI306032             [AAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTTCTACAGTAAATAAAGAGGTGACGTCGTTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTTGTAGTGGTAATCTATCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTGTGGTTTTCCAGTATTAGATTTTCTTAAT]
[-] EMBL CB966426             [          GCACTTGAGCCAAATAGGAAACTTCGAGAGGAGCTGGAGCTTGCAAGGCGTCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTTCTACAGTAAATAAAGAGGTGACGTCGTTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACAAGTGTCCGATGGACAAAAAAGGGTGGTGTTTGTGTGGCGTTGTAGTGGTAATCTATCTTGATCCATGATGTATTTTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTGTGGTTTT CAGTATTAGATTTTCTTAAT]


>consensus_5291#1 AAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGGAGCTTGCAAGGCG TCAAGCCAGTCAACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACT TAGCATTATTCTGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAG ATAATTTCTACAGTAAATAAAGAGGTGACGTCGTTGGGGATGCTTAGTTTTGTTGGTCAG CTGCCAAAGGATGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACAAGTGTCCGAT GGACAAAAAAGGGTGGTGTTTGTGTGGCGTTGTAGTGGTAATCTATCTTGATCCATGATG TATTTTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTGTGGTTTTCCA GTATTAGATTTTCTTAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5291#0      TCCTGCGACCTCGTCGACGTCGATCCCCCCGAGCTCCAGTTCCCCTTCGAGCTCGACAAG 60
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      CAGATCTCCTGCCCCCTCAGGATCGCCAACAAGACCGAGAGGACGGTCGCGTTTAAGGTT 120
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      AAGACGACGAGCCCCAAGAAGTACTGCGTGCGCCCCAATAATGGCGTCGTGCGGCCGCGA 180
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      TCCGCCTCCGTCGTTGTAGTCACGATGCAAGCGCAGATTGTGGCGCCTCCGGACTTGCAG 240
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      TGCAAGGACAAGTTCTTGGTGCAGAGCGTGGTCGTCGACGATGGCTTGTCAGCTAAGGAC 300
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      ATCACCTCTCAAATGTTCCTGAGAGATGAGAACAACATGGTTGAGGAGGTGAAGCTTAAG 360
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      GTTTCTTATGTGATGCCACCTGAACCAGCGATGGAGATTGCAGAGGAGTCTGATATTCCA 420
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      AAGAGAATTTTGGTGCCTATGCGGCGGATTTTGGATAATGGGAGGAGTGGTTCGGAGCTG 480
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      TCAAGTGGTAATGTCTCATTGAGATCAGCTGAGATGGGGACAGAGTTGGGATCACCTCTT 540
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      GGACGATTTGTGAGAAATGAGGATATGCTGAAGACTGCAAGTCCTGTTGTTGAAACAAGA 600
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      GTACATGCAGGACCTGATGAACAATACCTCGAGCTGTCCGCTTTGGTTGCAAAATTGACC 660
consensus_5291#1      ------------------------------------------------------------
                                                                                  

consensus_5291#0      GAAGAAAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTGTGATCATCT 720
consensus_5291#1      -----AAAGAAGTCTGCACTTGAGCAAAATAGGAAACTTCGAGAGGAGCTG--------- 46
                           **********************************************         

consensus_5291#0      TTGTCAACCCCATGTTGGTGGGCATAAATATGCAGGAGCTTGCAAGGCGTCAAGCCAGTC 780
consensus_5291#1      -----------------------------------GAGCTTGCAAGGCGTCAAGCCAGTC 71
                                                         *************************

consensus_5291#0      AACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTC 840
consensus_5291#1      AACATCAAGGAGGCTTCTCGCTGGCATTCGTACTGGTGATTGGGCTACTTAGCATTATTC 131
                      ************************************************************

consensus_5291#0      TGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATT-CTAC 899
consensus_5291#1      TGGGTTGTCTTGTAAAGAAATGAGAAATCTCATATTCCAGTCTAGTCAGATAATTTCTAC 191
                      ******************************************************* ****

consensus_5291#0      AGTAAATAAAAAGGTGACGTCGT-GGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGA 958
consensus_5291#1      AGTAAATAAAGAGGTGACGTCGTTGGGGATGCTTAGTTTTGTTGGTCAGCTGCCAAAGGA 251
                      ********** ************ ************************************

consensus_5291#0      TGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTACTGTTTACAAGTGTCCGATGGAC 1018
consensus_5291#1      TGCAGAAAAACAAATGTACCAAGTTTGGTGAGGTTTAC-------AAGTGTCCGATGGAC 304
                      **************************************       ***************

consensus_5291#0      AAAAAAGGGTGGTGTTTGTGTGGCGTCGTAGTGGTAATCTAGCTTGATCCATGATGTATT 1078
consensus_5291#1      AAAAAAGGGTGGTGTTTGTGTGGCGTTGTAGTGGTAATCTATCTTGATCCATGATGTATT 364
                      ************************** ************** ******************

consensus_5291#0      TTTAAACTAATCATTGGAAAGT-------------------------------------- 1100
consensus_5291#1      TTTAAACTAATCATTGGAAAGTTACTCCTATTGATTGTTACGTGTGTGGTTTTCCAGTAT 424
                      **********************                                      

consensus_5291#0      --------------
consensus_5291#1      TAGATTTTCTTAAT 438
                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)