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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1582 fasta sequence
[TCACTATTTTTTTTATCAGAACCGCAGATAGATTGTACAGAAACTTGTTGAGTATTGAAAGTACTCTGTATGGTCAACAATTCTCATATGAAATATGTGCAATCATTCCTGTATGCAACAAAAGTTTTAAGGAAAAAATGGTTTGGTTATGCTGTCAGGCTGTTTCTTGACTGCTTGCAAGATCGGAAAGCTTTACAGAGCAATTTCCCTCTTTCTATAGCTACATCTAACTATTTTGAATTGATCCAGATATAATACAGAATAGAGTACAACTACAGGAGAAGACTTATGGCTCTTCTTCGGGAAGCTACAAGCAGGAAATTTGCTGGTTGACTCCACCAGTTGGCACCATACGACTTGTGCAGTGGCAAGACATTGGAATAGAGCTGAGCAATGCATTCACCACCTCGACTGAGGGATTTCTCTTGAGCAAGCACATGGCATACTCCATCTCTCAGCATCAAAAGGCAACACGATTCTGCCGTCGCTTGTGAAACCGAACTCCTCCTGGGACATCCTCAGGAGTTCACTGAAGACCGCGGTGCCAAGGTACGTCAACGGGACCTCGAACCGCCTCCCATCAGCTGTGTACATGACGCAGTGGCCCCTTGACTGCTACAGAAGTGGAGCATTCTTCAGTTTCTGGGCCCTTTTCCATGATCCTCTTTCTTCCAAGGGCTGCCATCCTCTGCCACTTTGCCAATTGAACCAGTCTCTTGGCGCTGATCATGGTTGGTTGGCTGGTTTTTTCAGCTGAAAATATGAATAGGTATGCTATAAGGTGTGATTCTCAGTTTCTGTCTCTGGAGGAGCTGATGAACTGATGATATTGAGATAGCTAGTCTGAATTTATAGATGGGGGAAATGATGGTGTGCGAGTGTCTAGGTTGGCCAGAAGTATCAGCAAGGGACAGGGCCATGATACCGCAACATGCAAATGCTGAGTGCAACTGGTTGAATTAGATTTTGATAGGGACAAGTGTTTGCTACATGCATGTCTTAGTGGTTGAGTTCTGCACACACCGCTATATGCACTTGATGCCAGAGTGACATACTGACATGTTTAGTGAATGAGGAACACGAGGACCCCATGTTTAATTGGGTCCATGTTGTGACGGCGTGAGGGGCAGTTCCATCAACTATTGTGCAATGAGATAATAGCAGAGAAGTATGGTGAGGGCACCTCTGGTCCAGCTTTTTATTGGCGGATTCCATCATGCTTGGCATATTTTTTTTGACTTGGAAAACTGCCAGGGCTTTGCGTAGCAGTGTATTTTCATTAAAGCAGAAAATATTTACAGAGGTTTACATACAGCAAGATCTTAAAGCTACAAAGTTTGTAACCAATCAAAAACAGATTGCTTTAAAGGATCCTTCATTCTACACAGATGTAGAAGAATTTGTTTGGCGAACAAGGCCTTCCAAGATTGAAATGATGGAATAATATTATAAAAAATGAGCCCATTTCTCTGCTTCCATATGCCTGGCATATTTTGTGGGAGTAAAAATTATTTGCTTGTGTTTATTGGAGCTAATAAATATTTCAGAATTCAGCGGCCGCGAATTCGCGGCCGCTAGCGGC]
[+] EMBL AK071560 [TCACTATTTTTTTTATCAGAACCGCAGATAGATTGTACAGAAACTTGTTGAGTATTGAAAGTACTCTGTATGGTCAACAATTCTCATATGAAATATGTGCAATCATTCCTGTATGCAACAAAAGTTTTAAGGAAAAAATGGTTTGGTTATGCTGTCAGGCTGTTTCTTGACTGCTTGCAAGATCGGAAAGCTTTACAGAGCAATTTCCCTCTTTCTATAGCTACATCTAACTATTTTGAATTGATCCAGATATAATACAGAATAGAGTACAACTACAGGAGAAGACTTATGGCTCTTCTTCGGGAAGCTACAAGCAGGAAATTTGCTGGTTGACTCCACCAGTTGGCACCATACGACTTGTGCAGTGGCAAGACATTGGAATAGAGCTGAGCAATGCATTCACCACCTCGACTGAGGGATTTCTCTTGAGCAAGCACATGGCATACTCCATCTCTCAGCATCAAAAGGCAACACGATTCTGCCGTCGCTTGTGAAACCGAACTCCTCCTGGGACATCCTCAGGAGTTCACTGAAGACCGCGGTGCCAAGGTACGTCAACGGGACCTCGAACCGCCTCCCATCAGCTGTGTACATGACGCAGTGGCCCCTTGACTGCTACAGAAGTGGAGCATTCTTCAGTTTCTGGGCCCTTTTCCATGATCCTCTTTCTTCCAAGGGCTGCCATCCTCTGCCACTTTGCCAATTGAACCAGTCTCTTGGCGCTGATCATGGTTGGTTGGCTGGTTTTTTCAGCTGAAAATATGAATAGGTATGCTATAAGGTGTGATTCTCAGTTTCTGTCTCTGGAGGAGCTGATGAACTGATGATATTGAGATAGCTAGTCTGAATTTATAGATGGGGGAAATGATGGTGTGCGAGTGTCTAGGTTGGCCAGAAGTATCAGCAAGGGACAGGGCCATGATACCGCAACATGCAAATGCTGAGTGCAACTGGTTGAATTAGATTTTGATAGGGACAAGTGTTTGCTACATGCATGTCTTAGTGGTTGAGTTCTGCACACACCGCTATATGCACTTGATGCCAGAGTGACATACTGACATGTTTAGTGAATGAGGAACACGAGGACCCCATGTTTAATTGGGTCCATGTTGTGACGGCGTGAGGGGCAGTTCCATCAACTATTGTGCAATGAGATAATAGCAGAGAAGTATGGTGAGGGCACCTCTGGTCCAGCTTTTTATTGGCGGATTCCATCATGCTTGGCATATTTTTTTTGACTTGGAAAACTGCCAGGGCTTTGCGTAGCAGTGTATTTTCATTAAAGCAGAAAATATTTACAGAGGTTTACATACAGCAAGATCTTAAAGCTACAAAGTTTGTAACCAATCAAAAACAGATTGCTTTAAAGGATCCTTCATTCTACACAGATGTAGAAGAATTTGTTTGGCGAACAAGGCCTTCCAAGATTGAAATGATGGAATAATATTATAAAAAATGAGCCCATTTCTCTGCTTCCATATGCCTGGCATATTTTGTGGGAGTAAAAATTATTTGCTTGTGTTTATTGGAGCTAATAAATATTTCAGA ]
[-] EMBL AU225340 [ ccgctAACAGATTGCTTTAAAGGATCCTTCATTCTACACAGATGTAGAAGAATTTCTTTGGCGAACAAGGCCTTCCAAGATTGAAATGATGGAATAATATTATAAAAAATGAGCCCATTTCTCTGCTTCCATATGCCTGGCATATTTTGTGGGAGTAAAAATTATTTGCTTGTGTTTATTGGAGCTAATAAATATTTCAGAATTCAGCGGCCGCGAATTCGCGGCCGCTAGCGGC]
consensusID : consensus_5304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 813 fasta sequence
[GGGGGGTGTGGAAAATTTAGATGAAAAAAGTGAAAAGAAAAATGGAGTGCTCTTATGCCTTTGAGCATGTTCAGGCCTACTGGCTACTGCCTTCTTTAAAGGGCGAGCCATATGGCTCTTCTTCAGGAAGCTACAAGCAGGAAATTTGCTGGTTGACTCCGACAGTTGGCACCATACTACCAGTGCAGTGGCAACGTATCAGCATAGAGCTGAGCAATGCATCCACCACCTCGACCGATGGATTCCTCTTGAGCAAGCACATGGCATACTCCATTTCTGCAGCATCACAAGGCAACACAATTCTCCCGTCGCTTGTGAAGCCAAACTCCTCCTGGGACATCCTCAGGAGTTCACTGAAGACCACTGTGCCAAGGTACGCCAATGGGACCTCAAACCGCCTCCCATCAGCTGTGTACATGACGCAGTGGCCCTTGACTGCTACAGAAGTGGAGCATTCTTCAGTTTCTTGGGCCTTTCCCATGATCCTCTTCCTTCCAAGGGCTGCCATCCTCTGCCACTTTGCCAATTGGACCAGTCTCTTGGCGCTGATCATGGTTGGTTGGCTGGTTTTTTCAGCTGAAAATATGAATAGGTATGCTATAAGGGGTGATTCTCAGTTTCTGTCTCTGGAGGAGCTGATGAACTGATGATATTGAGATAGCTAGTCTGAATTTATAGATGGGGGGAAATGATGGTGTGCGAGTGTCTAAGGTTGGCCAGAAGTTTCAGCAAGGGACAGGGCCATGATACCCGGAACATGCAAATGCTGAGNGCAACTGGTTGAAATANATTTTGANAAGGACAAGGGGTTGC]
[+] EMBL CB096280 [GGGGGGTGTGGAAAATTTAGATGAAAAAAGTGAAAAGAAAAATGGAGTGCTCTTATGCCTTTGAGCATGTTCAGGCCTACTGGCTACTGCCTTCTTTAAAGGGCGAGCCATATGGCTCTTCTTCAGGAAGCTACAAGCAGGAAATTTGCTGGTTGACTCCGACAGTTGGCACCATACTACCAGTGCAGTGGCAACGTATCAGCATAGAGCTGAGCAATGCATCCACCACCTCGACCGATGGATTCCTCTTGAGCAAGCACATGGCATACTCCATTTCTGCAGCATCACAAGGCAACACAATTCTCCCGTCGCTTGTGAAGCCAAACTCCTCCTGGGACATCCTCAGGAGTTCACTGAAGACCACTGTGCCAAGGTACGCCAATGGGACCTCAAACCGCCTCCCATCAGCTGTGTACATGACGCAGTGGCCCTTGACTGCTACAGAAGTGGAGCATTCTTCAGTTTCTTGGGCCTTTCCCATGATCCTCTTCCTTCCAAGGGCTGCCATCCTCTGCCACTTTGCCAATTGGACCAGTCTCTTGGCGCTGATCATGGTTGGTTGGCTGGTTTTTTCAGCTGAAAATATGAATAGGTATGCTATAAGGGGTGATTCTCAGTTTCTGTCTCTGGAGGAGCTGATGAACTGATGATATTGAGATAGCTAGTCTGAATTTATAGATGGGGGGAAATGATGGTGTGCGAGTGTCTAAGGTTGGCCAGAAGTTTCAGCAAGGGACAGGGCCATGATACCCGGAACATGCAAATGCTGAGNGCAACTGGTTGAAATANATTTTGANAAGGACAAGGGGTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5304#0 TCACTATTTTTTTTATCAGAACCGCAGATAGATTGTACAGAAACTTGTTGAGTATTGAAA 60
consensus_5304#1 ------------------------------------------------------------
consensus_5304#0 GTACTCTGTATGGTCAACAATTCTCATATGAAATATGTGCAATCATTCCTGTATGCAACA 120
consensus_5304#1 ------------------------------------------------------------
consensus_5304#0 AAAGTTTTAAGGAAAAAATGGTTTGGTTATGCTGTCAGGCTGTTTCTTGACTGCTTGCAA 180
consensus_5304#1 -------------------------------------------------------GGGGG 5
*
consensus_5304#0 GATCGGAAAGCTTTACAGAGCAATTTCCCTCTTTCTATAGCTACATCTAACTATTTTGAA 240
consensus_5304#1 GTGTGGAAAATTTAGATGAAAAAAGTGAAAAGAAAAATGGAGTGCTCTTATGCCTTTGAG 65
* ***** ** ** ** * ** * *** * *****
consensus_5304#0 TTGATCCAGATATAATACAGAATAGAGTACAACTACAGGAGAAGACTTATGGCTCTTCTT 300
consensus_5304#1 CATGTTCAGGCCTACTGGCTACTGCCTTCT--TTAAAGGGCGAGCCATATGGCTCTTCTT 123
* *** ** * * * * ** *** ** * *************
consensus_5304#0 CGGGAAGCTACAAGCAGGAAATTTGCTGGTTGACTCCACCAGTTGGCACCATACGACTTG 360
consensus_5304#1 CAGGAAGCTACAAGCAGGAAATTTGCTGGTTGACTCCGACAGTTGGCACCATACTACCAG 183
* *********************************** *************** ** *
consensus_5304#0 TGCAGTGGCAAGACATTGGAATAGAGCTGAGCAATGCATTCACCACCTCGACTGAGGGAT 420
consensus_5304#1 TGCAGTGGCAACGTATCAGCATAGAGCTGAGCAATGCATCCACCACCTCGACCGATGGAT 243
*********** ** * ******************* ************ ** ****
consensus_5304#0 TTCTCTTGAGCAAGCACATGGCATACTCCATCTCT-CAGCATCAAAAGGCAACACGATTC 479
consensus_5304#1 TCCTCTTGAGCAAGCACATGGCATACTCCATTTCTGCAGCATCACAAGGCAACACAATTC 303
* ***************************** *** ******** ********** ****
consensus_5304#0 TGCCGTCGCTTGTGAAACCGAACTCCTCCTGGGACATCCTCAGGAGTTCACTGAAGACCG 539
consensus_5304#1 TCCCGTCGCTTGTGAAGCCAAACTCCTCCTGGGACATCCTCAGGAGTTCACTGAAGACCA 363
* ************** ** ***************************************
consensus_5304#0 CGGTGCCAAGGTACGTCAACGGGACCTCGAACCGCCTCCCATCAGCTGTGTACATGACGC 599
consensus_5304#1 CTGTGCCAAGGTACGCCAATGGGACCTCAAACCGCCTCCCATCAGCTGTGTACATGACGC 423
* ************* *** ******** *******************************
consensus_5304#0 AGTGGCCCCTTGACTGCTACAGAAGTGGAGCATTCTTCAGTTTCTGGGCCCTTTTCCATG 659
consensus_5304#1 AGTGGCCC-TTGACTGCTACAGAAGTGGAGCATTCTTCAGTTTCTTGGGCCTTTCCCATG 482
******** ************************************ ** ***** *****
consensus_5304#0 ATCCTCTTTCTTCCAAGGGCTGCCATCCTCTGCCACTTTGCCAATTGAACCAGTCTCTTG 719
consensus_5304#1 ATCCTCTTCCTTCCAAGGGCTGCCATCCTCTGCCACTTTGCCAATTGGACCAGTCTCTTG 542
******** ************************************** ************
consensus_5304#0 GCGCTGATCATGGTTGGTTGGCTGGTTTTTTCAGCTGAAAATATGAATAGGTATGCTATA 779
consensus_5304#1 GCGCTGATCATGGTTGGTTGGCTGGTTTTTTCAGCTGAAAATATGAATAGGTATGCTATA 602
************************************************************
consensus_5304#0 AGGTGTGATTCTCAGTTTCTGTCTCTGGAGGAGCTGATGAACTGATGATATTGAGATAGC 839
consensus_5304#1 AGGGGTGATTCTCAGTTTCTGTCTCTGGAGGAGCTGATGAACTGATGATATTGAGATAGC 662
*** ********************************************************
consensus_5304#0 TAGTCTGAATTTATAGATGGGGG-AAATGATGGTGTGCGAGTGTCTA-GGTTGGCCAGAA 897
consensus_5304#1 TAGTCTGAATTTATAGATGGGGGGAAATGATGGTGTGCGAGTGTCTAAGGTTGGCCAGAA 722
*********************** *********************** ************
consensus_5304#0 GTATCAGCAAGGGACAGGGCCATGATACC-GCAACATGCAAATGCTGAGTGCAACTGGTT 956
consensus_5304#1 GTTTCAGCAAGGGACAGGGCCATGATACCCGGAACATGCAAATGCTGAGNGCAACTGGTT 782
** ************************** * ***************** **********
consensus_5304#0 GAATTAGATTTTGATAGGGACAAGTGTTTGCTACATGCATGTCTTAGTGGTTGAGTTCTG 1016
consensus_5304#1 GAAATANATTTTGANAAGGACAAGGGGTTGC----------------------------- 813
*** ** ******* * ******* * ****
consensus_5304#0 CACACACCGCTATATGCACTTGATGCCAGAGTGACATACTGACATGTTTAGTGAATGAGG 1076
consensus_5304#1 ------------------------------------------------------------
consensus_5304#0 AACACGAGGACCCCATGTTTAATTGGGTCCATGTTGTGACGGCGTGAGGGGCAGTTCCAT 1136
consensus_5304#1 ------------------------------------------------------------
consensus_5304#0 CAACTATTGTGCAATGAGATAATAGCAGAGAAGTATGGTGAGGGCACCTCTGGTCCAGCT 1196
consensus_5304#1 ------------------------------------------------------------
consensus_5304#0 TTTTATTGGCGGATTCCATCATGCTTGGCATATTTTTTTTGACTTGGAAAACTGCCAGGG 1256
consensus_5304#1 ------------------------------------------------------------
consensus_5304#0 CTTTGCGTAGCAGTGTATTTTCATTAAAGCAGAAAATATTTACAGAGGTTTACATACAGC 1316
consensus_5304#1 ------------------------------------------------------------
consensus_5304#0 AAGATCTTAAAGCTACAAAGTTTGTAACCAATCAAAAACAGATTGCTTTAAAGGATCCTT 1376
consensus_5304#1 ------------------------------------------------------------
consensus_5304#0 CATTCTACACAGATGTAGAAGAATTTGTTTGGCGAACAAGGCCTTCCAAGATTGAAATGA 1436
consensus_5304#1 ------------------------------------------------------------
consensus_5304#0 TGGAATAATATTATAAAAAATGAGCCCATTTCTCTGCTTCCATATGCCTGGCATATTTTG 1496
consensus_5304#1 ------------------------------------------------------------
consensus_5304#0 TGGGAGTAAAAATTATTTGCTTGTGTTTATTGGAGCTAATAAATATTTCAGAATTCAGCG 1556
consensus_5304#1 ------------------------------------------------------------
consensus_5304#0 GCCGCGAATTCGCGGCCGCTAGCGGC 1582
consensus_5304#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||