cluster # 5306

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Oryza sativa
cluster # 5306 cluster # 5306 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5306#0 length = 838 sequences # 2

consensus_5306#1 length = 293 sequences # 1

consensusID : consensus_5306#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 838
fasta sequence

                              [GCGGCGCCACCGGCGGCTGGAGGTCGGCGCTCTTCATCATAGCGGTGGAGATCGCGGANGNTGTCGCGTTCTACGGGGTGTCGGCGAACCTGATCACCTACCTGACGGGCTCGCTCNGGGAAGGGAACGCAGCGGCGGCGGCGGCCATCAACGCCTGGAACGGCGTCTCCCAGCTGCTGCCGCTGCTCGGCGGCGCCCTCGCCGACTCCTGGCTCGGCCGCTACCGCACCATCCTCCTCGCCTCGCTGCTCTACATCCTGGGCTTGGCCATGTTAGCTTTCTCGACCTTGATCTCCACCGGCGGCAACCAATGCAGCAACNCCGCCGTCGCCGGC-GCAAGGACCTGCCCACCGTCGACTCTGCGGGTGGCGTTCTTCTACATCTCCCTCTACATGGTGGCCGTCGCGCAGGGCGGCCACAAGCCGTGCGTGCAGGCGTTCGGCGCCGACCAGTTCGACCCGAGCGACCCCGAGGAGTCGGTCTCCAGGAGCTCCTTCTTCAACTGGTGGTACTTCGGCATGTGCGGCGGCACCGCCGTCACGCTGGTGTTCCTCAGCTACGTCCAGGACAACATCGGCTGGGGCCTCGGCTTCGGCATCCCCTGCGTCGTCATGGCGTGCGCCCTCGCCGTGTTCCTGCTCGGCACCAGGACGTACCGCTACTACGTCTCCGGCAGCAAGAAGGGCGTGGTCGCTCGCGCCGGCGAGGCACTCGCGGCGTGGCGAAACAGGGCGAAGTCGATCCCCCTTCTTCCGCCGGCTTCGCAGGAGTGCCATCCAACGGCGACATCGGCGCCGGAGTTCATCACGGGAGTACAGGAGGACGAACAGGTGGTGGG]

[-] EMBL AU081298             [GCGGCGCCACCGGCGGCTGGAGGTCGGCGCTCTTCATCATAGCGGTGGAGATCGCGGANGNTGTCGCGTTCTACGGGGTGTCGGCGAACCTGATCACCTACCTGACGGGCTCGCTCNGGGAAGGGAACGCAGCGGCGGCGGCGGCCATCAACGCCTGGAACGGCGTCTCCCAGCTGCTGCCGCTGCTCGGCGGCGCCCTCGCCGACTCCTGGCTCGGCCGCTACCGCACCATCCTCCTCGCCTCGCTGCTCTACATCCTGGGCTTGGCCATGTTAGCTTTCTCGACCTTGATCTCCACCGGCGGCAACCAATGCAGCAACNCCGCCGTCGCCGGC GCAAGGACCTGCCCACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB669343             [                                                                                              ccCCTAACTGACGGGCTCGCTCGGGGAAGGGAACGCGGCGGCGGCGGCGGCCATCAACGCCTGGAACGGCGTCTCCCAGCTGCTGCCGCTGCTCGGCGGCGCCCTCGCCGACTCCTGGCTCGGCCGCTACCGCACCATCCTCCTCGCCTCGCTGCTCTACATCCTGGGCTTGGCCATGTTAGCTTTCTCGACCTTGATCTCCACCGGCGGCAACCAATGCAGCAGCGCCGCCGTCGCCGGCGGCAA GACCTGCCCACCGTCGACTCTGCGGGTGGCGTTCTTCTACATCTCCCTCTACATGGTGGCCGTCGCGCAGGGCGGCCACAAGCCGTGCGTGCAGGCGTTCGGCGCCGACCAGTTCGACCCGAGCGACCCCGAGGAGTCGGTCTCCAGGAGCTCCTTCTTCAACTGGTGGTACTTCGGCATGTGCGGCGGCACCGCCGTCACGCTGGTGTTCCTCAGCTACGTCCAGGACAACATCGGCTGGGGCCTCGGCTTCGGCATCCCCTGCGTCGTCATGGCGTGCGCCCTCGCCGTGTTCCTGCTCGGCACCAGGACGTACCGCTACTACGTCTCCGGCAGCAAGAAGGGCGTGGTCGCTCGCGCCGGCGAGGCACTCGCGGCGTGGCGAAACAGGGCGAAGTCGATCCCCCTTCTTCCGCCGGCTTCGCAGGAGTGCCATCCAACGGCGACATCGGCGCCGGAGTTCATCACGGGAGTACAGGAGGACGAACAGGTGGTGGG]




>consensus_5306#0
GCGGCGCCACCGGCGGCTGGAGGTCGGCGCTCTTCATCATAGCGGTGGAGATCGCGGANG
NTGTCGCGTTCTACGGGGTGTCGGCGAACCTGATCACCTACCTGACGGGCTCGCTCNGGG
AAGGGAACGCAGCGGCGGCGGCGGCCATCAACGCCTGGAACGGCGTCTCCCAGCTGCTGC
CGCTGCTCGGCGGCGCCCTCGCCGACTCCTGGCTCGGCCGCTACCGCACCATCCTCCTCG
CCTCGCTGCTCTACATCCTGGGCTTGGCCATGTTAGCTTTCTCGACCTTGATCTCCACCG
GCGGCAACCAATGCAGCAACNCCGCCGTCGCCGGCGCAAGGACCTGCCCACCGTCGACTC
TGCGGGTGGCGTTCTTCTACATCTCCCTCTACATGGTGGCCGTCGCGCAGGGCGGCCACA
AGCCGTGCGTGCAGGCGTTCGGCGCCGACCAGTTCGACCCGAGCGACCCCGAGGAGTCGG
TCTCCAGGAGCTCCTTCTTCAACTGGTGGTACTTCGGCATGTGCGGCGGCACCGCCGTCA
CGCTGGTGTTCCTCAGCTACGTCCAGGACAACATCGGCTGGGGCCTCGGCTTCGGCATCC
CCTGCGTCGTCATGGCGTGCGCCCTCGCCGTGTTCCTGCTCGGCACCAGGACGTACCGCT
ACTACGTCTCCGGCAGCAAGAAGGGCGTGGTCGCTCGCGCCGGCGAGGCACTCGCGGCGT
GGCGAAACAGGGCGAAGTCGATCCCCCTTCTTCCGCCGGCTTCGCAGGAGTGCCATCCAA
CGGCGACATCGGCGCCGGAGTTCATCACGGGAGTACAGGAGGACGAACAGGTGGTGGG

consensusID : consensus_5306#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [TTCGCGTTCTACGGGNTGTCGGCGAACNTGATCACCTACTGACGGGCTCGCTAGGGGAAGGGAAGCGGCGGCGGCGGCGGCCATCAAAGCCTGGAACGGCGTCTCCCAGCTGCTGAGCTGCTCGGGNGCCCTCGCCGACTCCTGGCTCGGCCCTACCGCACCATCCTCCNNGCCTCGCTGCTCTACATCCTGGGCTTGGCCATGTTAGCTTTCTCGACCTTGATCTCCACCGGCGGCAACCAATTGCANGNNANNCGTCNCGGCGGCAAGACCTGCCCACCGTCGACTCTGCG]

[-] EMBL OSC026               [TTCGCGTTCTACGGGNTGTCGGCGAACNTGATCACCTACTGACGGGCTCGCTAGGGGAAGGGAAGCGGCGGCGGCGGCGGCCATCAAAGCCTGGAACGGCGTCTCCCAGCTGCTGAGCTGCTCGGGNGCCCTCGCCGACTCCTGGCTCGGCCCTACCGCACCATCCTCCNNGCCTCGCTGCTCTACATCCTGGGCTTGGCCATGTTAGCTTTCTCGACCTTGATCTCCACCGGCGGCAACCAATTGCANGNNANNCGTCNCGGCGGCAAGACCTGCCCACCGTCGACTCTGCG]




>consensus_5306#1
TTCGCGTTCTACGGGNTGTCGGCGAACNTGATCACCTACTGACGGGCTCGCTAGGGGAAG
GGAAGCGGCGGCGGCGGCGGCCATCAAAGCCTGGAACGGCGTCTCCCAGCTGCTGAGCTG
CTCGGGNGCCCTCGCCGACTCCTGGCTCGGCCCTACCGCACCATCCTCCNNGCCTCGCTG
CTCTACATCCTGGGCTTGGCCATGTTAGCTTTCTCGACCTTGATCTCCACCGGCGGCAAC
CAATTGCANGNNANNCGTCNCGGCGGCAAGACCTGCCCACCGTCGACTCTGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5306#0      GCGGCGCCACCGGCGGCTGGAGGTCGGCGCTCTTCATCATAGCGGTGGAGATCGCGGANG 60
consensus_5306#1      ------------------------------------------------------------
                                                                                  

consensus_5306#0      NTGTCGCGTTCTACGGGGTGTCGGCGAACCTGATCACCTACCTGACGGGCTCGCTCNGGG 120
consensus_5306#1      --TTCGCGTTCTACGGGNTGTCGGCGAACNTGATCACCTAC-TGACGGGCTCGCTAGGGG 57
                         ************** *********** *********** *************  ***

consensus_5306#0      AAGGGAACGCAGCGGCGGCGGCGGCCATCAACGCCTGGAACGGCGTCTCCCAGCTGCTGC 180
consensus_5306#1      AAGGGAA-GCGGCGGCGGCGGCGGCCATCAAAGCCTGGAACGGCGTCTCCCAGCTGCTGA 116
                      ******* ** ******************** *************************** 

consensus_5306#0      CGCTGCTCGGCGGCGCCCTCGCCGACTCCTGGCTCGGCCGCTACCGCACCATCCTCCTCG 240
consensus_5306#1      -GCTGCTCG--GGNGCCCTCGCCGACTCCTGGCTCGGCC-CTACCGCACCATCCTCCNNG 172
                       ********  ** ************************* *****************  *

consensus_5306#0      CCTCGCTGCTCTACATCCTGGGCTTGGCCATGTTAGCTTTCTCGACCTTGATCTCCACCG 300
consensus_5306#1      CCTCGCTGCTCTACATCCTGGGCTTGGCCATGTTAGCTTTCTCGACCTTGATCTCCACCG 232
                      ************************************************************

consensus_5306#0      GCGGCAACCAATGCAGCAACNCCGCCGTCGCCGGCGCAAGGACCTGCCCACCGTCGACTC 360
consensus_5306#1      GCGGCAACCAAT--TGCANGNNANNCGTCNC-GGCGGCAAGACCTGCCCACCGTCGACTC 289
                      ************   ***  *    **** * ****  * ********************

consensus_5306#0      TGCGGGTGGCGTTCTTCTACATCTCCCTCTACATGGTGGCCGTCGCGCAGGGCGGCCACA 420
consensus_5306#1      TGCG-------------------------------------------------------- 293
                      ****                                                        

consensus_5306#0      AGCCGTGCGTGCAGGCGTTCGGCGCCGACCAGTTCGACCCGAGCGACCCCGAGGAGTCGG 480
consensus_5306#1      ------------------------------------------------------------
                                                                                  

consensus_5306#0      TCTCCAGGAGCTCCTTCTTCAACTGGTGGTACTTCGGCATGTGCGGCGGCACCGCCGTCA 540
consensus_5306#1      ------------------------------------------------------------
                                                                                  

consensus_5306#0      CGCTGGTGTTCCTCAGCTACGTCCAGGACAACATCGGCTGGGGCCTCGGCTTCGGCATCC 600
consensus_5306#1      ------------------------------------------------------------
                                                                                  

consensus_5306#0      CCTGCGTCGTCATGGCGTGCGCCCTCGCCGTGTTCCTGCTCGGCACCAGGACGTACCGCT 660
consensus_5306#1      ------------------------------------------------------------
                                                                                  

consensus_5306#0      ACTACGTCTCCGGCAGCAAGAAGGGCGTGGTCGCTCGCGCCGGCGAGGCACTCGCGGCGT 720
consensus_5306#1      ------------------------------------------------------------
                                                                                  

consensus_5306#0      GGCGAAACAGGGCGAAGTCGATCCCCCTTCTTCCGCCGGCTTCGCAGGAGTGCCATCCAA 780
consensus_5306#1      ------------------------------------------------------------
                                                                                  

consensus_5306#0      CGGCGACATCGGCGCCGGAGTTCATCACGGGAGTACAGGAGGACGAACAGGTGGTGGG 838
consensus_5306#1      ----------------------------------------------------------