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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5315#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1686 fasta sequence
[GTTTGTCCGTTGCTCTTGATGCCATTTGGTTCTTGCGGACGGAGCAGGATCTTCAAGGTCTCAACCATCTGATAGGTAAGATTGTAGAATCAGGGGCGAAGGATTTTGCCAGGGCAATCCTCAGGACTTCATTGCTCGCATCTTGTGTCGTTGCCTGCCAAAGCAAGGCGCTTACTTTAGGTGATAGCAAGGAAATCATAGCTCAGAGATTACATGATCGTCTACAAGATTGTCCTGGCGGTGAACGTTTACAAATTGAGGCAGGTGCCAAAGTGCAGAAGTTTATAGAATGGGCATTGCAGTGCATTCATCTGCATCGTTGTTCTGAAGATATAGAGTGTTACAAAGCAAACTGCAGCACTCACCAAGAGGTACAGTTCCATCTATCAGCGTTTAAAGCCTTCTTGGACATAGCTGGTGACAATCTCAGTGGCAAGATTTTCACTGAGGCATTCGATGCGGCCTGCTTCCCACTTACACTATTCTCAACTTTATTTGAACCTGGATGGTCTTCTGGGAGTTCAGCAGTTGCCATACAAGGGCTTTTGTCATTGCTGGTGGAAGGAGGTGCTGAGAATGTAAATCAGTGTTTTCTAGAAGCTTCACGTTTTGGAAGTACTGAGCTTGTACGCATTCTGCTAAAGATTGCTCATCAGAACAGCTTGGCTGTCGATGTCGATCTTGCTCTAGTCTATGCTTCTCACTACTGCAAATTTGAAACGATGGCATGCTTGGTGGATGAAGGGCATGCCACATCTTTCCTTTGTCCCTTAGTAAAAGCTTCTGAGCGTGGTTGCTTGCAGGTTGTCCAGTGGTTTGTCAACCGGCATGTTTCAGACATTGAGATGTGCCTTGCTGTAACAACCGCTGCCTCTTGCGGCCACTTCGCAGTTGCCACCTACCTGCTTGCGCATATCCCCCGGCATGTCCTCGAAGCCCTCAGCCCACAGATTCTCAAAGCTGCGAGGGGACAGGGTAGTGGGTCTTTTGAAGGTGTTTCCTTCCTTCTCCGTTCAAACTTCCTCAACGATGCCGCCGCTACGTATGCAGTTGCAGACAGCATTGCGACCACGAGTACGATGGATATTCCCCAAGACCTGGTTGATTTTCTGAAAGAGCAGTGGTCTCAGGCCGCATTTGC-TGAAGGAGTAGTGGCTGGGGAAGATCATTTTGTGAACATCACCAGGGTTCTGAGGAGAGGGGCGTCTCCGATCCGCCTGC-ATGACCTCCCGGAGCCCATGGCACTCGCTATCGCGTACCTGCCGCTGTACCGGGCATGCGCGAGTGCAAGAGGGCAGCTGCTGCCGCAGAGACTGAGGGGGGAACTGGTCGAGGCGGTTGGCCGGCTCGGCGTTCCGGTCAACATGGAAAACAACAGGAGAGATTTCCTGGCGGTTTTGGAGCATTACTTCCCATCATTCATAACTGGAGCTTGAGAAACCTCATGGAATTTTACCCAGAACCCAAATGGTTTAGCTGTTGACACAGTAGAATGGAGCCAAATGAGCCTTCACTGTGTTAGTTCACTATGTCAGAGAGAGGAGTTTGTTGTCGAGATTGTATAGAGCATTTTGCGGTTGCGATGTGAGAAGACATAAATGCTTGGAAACTTTTTTTTTTTTGTTTTTTTTTTGTTGCTGTCATAGGTCAGCGTTGGCACTACAACTGCACCATAAAATGTGATGG]
[+] EMBL AK106570 [GTTTGTCCGTTGCTCTTGATGCCATTTGGTTCTTGCGGACGGAGCAGGATCTTCAAGGTCTCAACCATCTGATAGGTAAGATTGTAGAATCAGGGGCGAAGGATTTTGCCAGGGCAATCCTCAGGACTTCATTGCTCGCATCTTGTGTCGTTGCCTGCCAAAGCAAGGCGCTTACTTTAGGTGATAGCAAGGAAATCATAGCTCAGAGATTACATGATCGTCTACAAGATTGTCCTGGCGGTGAACGTTTACAAATTGAGGCAGGTGCCAAAGTGCAGAAGTTTATAGAATGGGCATTGCAGTGCATTCATCTGCATCGTTGTTCTGAAGATATAGAGTGTTACAAAGCAAACTGCAGCACTCACCAAGAGGTACAGTTCCATCTATCAGCGTTTAAAGCCTTCTTGGACATAGCTGGTGACAATCTCAGTGGCAAGATTTTCACTGAGGCATTCGATGCGGCCTGCTTCCCACTTACACTATTCTCAACTTTATTTGAACCTGGATGGTCTTCTGGGAGTTCAGCAGTTGCCATACAAGGGCTTTTGTCATTGCTGGTGGAAGGAGGTGCTGAGAATGTAAATCAGTGTTTTCTAGAAGCTTCACGTTTTGGAAGTACTGAGCTTGTACGCATTCTGCTAAAGATTGCTCATCAGAACAGCTTGGCTGTCGATGTCGATCTTGCTCTAGTCTATGCTTCTCACTACTGCAAATTTGAAACGATGGCATGCTTGGTGGATGAAGGGCATGCCACATCTTTCCTTTGTCCCTTAGTAAAAGCTTCTGAGCGTGGTTGCTTGCAGGTTGTCCAGTGGTTTGTCAACCGGCATGTTTCAGACATTGAGATGTGCCTTGCTGTAACAACCGCTGCCTCTTGCGGCCACTTCGCAGTTGCCACCTACCTGCTTGCGCATATCCCCCGGCATGTCCTCGAAGCCCTCAGCCCACAGATTCTCAAAGCTGCGAGGGGACAGGGTAGTGGGTCTTTTGAAGGTGTTTCCTTCCTTCTCCGTTCAAACTTCCTCAACGATGCCGCCGCTACGTATGCAGTTGCAGACAGCATTGCGACCACGAGTACGATGGATATTCCCCAAGACCTGGTTGATTTTCTGAAAGAGCAGTGGTCTCAGGCCGCATTTGC TGAAGGAGTAGTGGCTGGGGAAGATCATTTTGTGAACATCACCAGGGTTCTGAGGAGAGGGGCGTCTCCGATCCGCCTGC ATGACCTCCCGGAGCCCATGGCACTCGCTATCGCGTACCTGCCGCTGTACCGGGCATGCGCGAGTGCAAGAGGGCAGCTGCTGCCGCAGAGACTGAGGGGGGAACTGGTCGAGGCGGTTGGCCGGCTCGGCGTTCCGGTCAACATGGAAAACAACAGGAGAGATTTCCTGGCGGTTTTGGAGCATTACTTCCCATCATTCATAACTGGAGCTTGAGAAACCTCATGGAATTTTACCCAGAACCCAAATGGTTTAGCTGTTGACACAGTAGAATGGAGCCAAATGAGCCTTCACTGTGTTAGTTCACTATGTCAGAGAGAGGAGTTTGTTGTCGAGATTGTATAGAGCATTTTGCGGTTGCGATGTGAGAAGACATAAATGCTTGGAAACTTTTTTTTTTTTGTTTTTTTTTTGTTGCTGTCATAGGTCAGCGTTGGCACTACAACTGCACCATAAAATGTGATGG]
[+] EMBL C72154 [ TGTAACAACCGCTGCCTCTTGCGGCCACTTCGCAGTTGCCACCTACCTGCTTGCGCATATCCCCCGGCATGTCCTCGAAGCCCTCAGCCCACAGATTCTCAAAGCTGCGAGGGGACAGGGTAGTGGGTCTTTTGAAGGTGTTTCCTTCCTTCTCCGTTCAAACTTCCTCAACGATGCCGCCGCTACGTATGCAGTTGCAGACAGCATTGCGACCACGAGTACGATGGATATTCCCCAAGACCTGGTTGATTTTCTGAAAGAGCAGTGGTCTCAGGCCGCATTTGCTTGAAGGAGTAGAGGCTGGGGAAGATCATTTTGTGAACATCACCAGGGTTCTGAGGAGAGGGGCG NTNCGATCCGCCTGCAATGACCTCCCGGAGCC ]
consensusID : consensus_5315#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[TCCCCACTCCACTTCACTAACTCTCGGAGGCCTTGGAGGAAACCCTCTCACTGGAATTTTACCCCCCACGAGACCCCACAAGTGGTTTAGCTCGTTGANACACCACGTATGAATTGGAGCCACAATGAGCCTTCACCTGTGTTATGTTCACCTATGTCACGAGAGAGGAGTTTGTTGTCGAGATTGTATAGAGCACTTTTGCGGTTGCGATGTGAGAAGACACTAAATGCTTGGAAACTTTTTTTTTGTTTTTTTTTTGTTGCTGTCATAGGTCAGCGTTGGCACCTACACACTGCACCCACTAAAATGTGATGGTATGTTTTTCAGTTGCTTGTGATGGTAAAAAAAAAA]
[+] EMBL BQ906708 [TCCCCACTCCACTTCACTAACTCTCGGAGGCCTTGGAGGAAACCCTCTCACTGGAATTTTACCCCCCACGAGACCCCACAAGTGGTTTAGCTCGTTGANACACCACGTATGAATTGGAGCCACAATGAGCCTTCACCTGTGTTATGTTCACCTATGTCACGAGAGAGGAGTTTGTTGTCGAGATTGTATAGAGCACTTTTGCGGTTGCGATGTGAGAAGACACTAAATGCTTGGAAACTTTTTTTTTGTTTTTTTTTTGTTGCTGTCATAGGTCAGCGTTGGCACCTACACACTGCACCCACTAAAATGTGATGGTATGTTTTTCAGTTGCTTGTGATGGTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5315#0 GTTTGTCCGTTGCTCTTGATGCCATTTGGTTCTTGCGGACGGAGCAGGATCTTCAAGGTC 60
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 TCAACCATCTGATAGGTAAGATTGTAGAATCAGGGGCGAAGGATTTTGCCAGGGCAATCC 120
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 TCAGGACTTCATTGCTCGCATCTTGTGTCGTTGCCTGCCAAAGCAAGGCGCTTACTTTAG 180
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 GTGATAGCAAGGAAATCATAGCTCAGAGATTACATGATCGTCTACAAGATTGTCCTGGCG 240
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 GTGAACGTTTACAAATTGAGGCAGGTGCCAAAGTGCAGAAGTTTATAGAATGGGCATTGC 300
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 AGTGCATTCATCTGCATCGTTGTTCTGAAGATATAGAGTGTTACAAAGCAAACTGCAGCA 360
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 CTCACCAAGAGGTACAGTTCCATCTATCAGCGTTTAAAGCCTTCTTGGACATAGCTGGTG 420
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 ACAATCTCAGTGGCAAGATTTTCACTGAGGCATTCGATGCGGCCTGCTTCCCACTTACAC 480
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 TATTCTCAACTTTATTTGAACCTGGATGGTCTTCTGGGAGTTCAGCAGTTGCCATACAAG 540
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 GGCTTTTGTCATTGCTGGTGGAAGGAGGTGCTGAGAATGTAAATCAGTGTTTTCTAGAAG 600
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 CTTCACGTTTTGGAAGTACTGAGCTTGTACGCATTCTGCTAAAGATTGCTCATCAGAACA 660
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 GCTTGGCTGTCGATGTCGATCTTGCTCTAGTCTATGCTTCTCACTACTGCAAATTTGAAA 720
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 CGATGGCATGCTTGGTGGATGAAGGGCATGCCACATCTTTCCTTTGTCCCTTAGTAAAAG 780
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 CTTCTGAGCGTGGTTGCTTGCAGGTTGTCCAGTGGTTTGTCAACCGGCATGTTTCAGACA 840
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 TTGAGATGTGCCTTGCTGTAACAACCGCTGCCTCTTGCGGCCACTTCGCAGTTGCCACCT 900
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 ACCTGCTTGCGCATATCCCCCGGCATGTCCTCGAAGCCCTCAGCCCACAGATTCTCAAAG 960
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 CTGCGAGGGGACAGGGTAGTGGGTCTTTTGAAGGTGTTTCCTTCCTTCTCCGTTCAAACT 1020
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 TCCTCAACGATGCCGCCGCTACGTATGCAGTTGCAGACAGCATTGCGACCACGAGTACGA 1080
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 TGGATATTCCCCAAGACCTGGTTGATTTTCTGAAAGAGCAGTGGTCTCAGGCCGCATTTG 1140
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 CTGAAGGAGTAGTGGCTGGGGAAGATCATTTTGTGAACATCACCAGGGTTCTGAGGAGAG 1200
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 GGGCGTCTCCGATCCGCCTGCATGACCTCCCGGAGCCCATGGCACTCGCTATCGCGTACC 1260
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 TGCCGCTGTACCGGGCATGCGCGAGTGCAAGAGGGCAGCTGCTGCCGCAGAGACTGAGGG 1320
consensus_5315#1 ------------------------------------------------------------
consensus_5315#0 GGGAACTGGTCGAGGCGGTTGGCCGGCTCGGCGTTCCGGTCAACATGGAAAACAACAGGA 1380
consensus_5315#1 --------------------------------TCCCCACTCCACTTCACTAAC------- 21
** ** ** * ***
consensus_5315#0 GAGATTTCCTGGCGGTTTTGGAGCATTACTTCCCATCATTCATAACTGGAGCTTGAGAAA 1440
consensus_5315#1 ------TCTCGGAGGCCTTGGAGGAAACCCTCTCA----------CTGGAATTTTAC--C 63
** ** ** ****** * * ** ** ***** ** *
consensus_5315#0 CCTCATGGAATTTTACCCAGAACCCAAATGGTTTAGCTGTTGACACAGTAGAATGGAGCC 1500
consensus_5315#1 CCCCACGAGACCCCACAAGTGGTTTAGCTCGTTGANACACC-ACGTA-TGAATTGGAGCC 121
** ** * * ** * * *** * ** * * * *******
consensus_5315#0 A-AATGAGCCTTCAC-TGTGTTA-GTTCAC-TATGTCA-GAGAGAGGAGTTTGTTGTCGA 1555
consensus_5315#1 ACAATGAGCCTTCACCTGTGTTATGTTCACCTATGTCACGAGAGAGGAGTTTGTTGTCGA 181
* ************* ******* ****** ******* *********************
consensus_5315#0 GATTGTATAGAGCA-TTTTGCGGTTGCGATGTGAGAAGACA-TAAATGCTTGGAAACTTT 1613
consensus_5315#1 GATTGTATAGAGCACTTTTGCGGTTGCGATGTGAGAAGACACTAAATGCTTGGAAACTTT 241
************** ************************** ******************
consensus_5315#0 TTTTTTTTTGTTTTTTTTTTGTTGCTGTCATAGGTCAGCGTTGGCAC-TACA-ACTGCAC 1671
consensus_5315#1 TTTTTT---GTTTTTTTTTTGTTGCTGTCATAGGTCAGCGTTGGCACCTACACACTGCAC 298
****** ************************************** **** *******
consensus_5315#0 CA--TAAAATGTGATGG------------------------------------ 1686
consensus_5315#1 CCACTAAAATGTGATGGTATGTTTTTCAGTTGCTTGTGATGGTAAAAAAAAAA 351
* *************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||