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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1454 fasta sequence
[GTGCGTTTGTAACTTCCTCCGCAGCTATCTCCCTTGCTCTCGCCATCTCGCCATTCTAGCTCCCGCAAAGCTCTCCCCCCCCGAGGCGAGCTCTCTCTGCTCCCGAGCGAGAGCTCTCGCCATGGCGAAGAACGCATGCAAGCTCTGCTACCGCCGCTTCGCTAGCCCACGCGCCCTCGCGGGGCACATGCGGTCTCACTCTGTGGCGGCCGCCAACGCAGCCGCGGCTGCGGCGGCGGCCGCAGCCGCGAAGCTGCAGATCTCATCGGCGTCGTCCGCGTCGACGTCGTTCACCGCGGCCGATGGGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGCGTGGGATTCAAGAAGCCCCTTTCCATCTACGCGCTCCGGGAGAATCCCAAGCGCAGCCTCCGCGTCTCCGAGTACGCGTTCTCCGACCGCGAGAGCGAGGCCGAGTCCACCCCGACGCCCGCAGCCAAGGGCTTACGCGCCGGCGGCGGCGGCGGCGGCGGCGATGGCGAGCCCATGAGCTCGTTGTCGTACGCGGGAACGCCGGAGGAGGAGGTGGCGCTGGCCCTCATGATGCTCTCCCGCGACACCTGGCCGTCCGTCGAGCGCGGTGGCGGCGGGGGCGAGTACTCGGACGACGGGAGCGACGACGGCTACGCGCTCCCTCCGCCGTCTCCCGCTCCGGCGCCGGCGCCGGTGCCGGAGAAGCGGACGCGGTTCCAGTGCCCCGCGTGCAAGAAGGTGTTCCGGTCCTACCAGGCGCTCGGCGGCCACCGCGCCAGCCACGTCCGCGGCGGCAGGGGCGGCTGCTGCGCGCCTCCCGTCGCTCCTCCCCCTCAGCCGCATCCGCAGCCGCCATTGCCGGAGCACGACGCGGGCGAGGAAGACATGGACGGGAAGGCGCCGCCGCACGAGTGCCCCTACTGCTACCGCGTGTTCGCCTCCGGGCAAGCTCTGGGCGGCCACAAGAAGTCTCACGTCTGCTCCGCCGCCGCCGCCGCGGCCCATGCACAGACACCCGGCGGCGGCGCTCCTCCGCCCCAGCCCAAAATTCTCGGCATGATCGATCTCAACTTCGCGCCGCCCGTGGATGAGGTGGAGCTCTCCGCCGTGTCAGATCCCCACTTCCCCTCCAATCCACCAGGTCCTTGAAGCAAGAAAACCAGACTTGGCAATGGCGGAGATGATGATCTGAGGTGAGGCATAAATCGAAGAAACAGAAAGAATAACAAAAAGAGGGAAAAAAAAAGAGAAGAGAAGGATAAACACAAGAACATATTTTTTAGCCCCTTAGTTAATCTTCTGGTCGTACCTTTTAGTATTCCATTCCATTGATTTGTGTTCAGAATGTTTAATTAATATGTTACTACCATGCTGTTGCTTTGTTTTTTTTTGCCTGTTTAAGCTATGGAATCGATGTAGATTTGAGCAACTGACAGTGCAACAAGAACTAGCCCCT]
[+] EMBL AK064694 [GTGCGTTTGTAACTTCCTCCGCAGCTATCTCCCTTGCTCTCGCCATCTCGCCATTCTAGCTCCCGCAAAGCTCTCCCCCCCCGAGGCGAGCTCTCTCTGCTCCCGAGCGAGAGCTCTCGCCATGGCGAAGAACGCATGCAAGCTCTGCTACCGCCGCTTCGCTAGCCCACGCGCCCTCGCGGGGCACATGCGGTCTCACTCTGTGGCGGCCGCCAACGCAGCCGCGGCTGCGGCGGCGGCCGCAGCCGCGAAGCTGCAGATCTCATCGGCGTCGTCCGCGTCGACGTCGTTCACCGCGGCCGATGGGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGCGTGGGATTCAAGAAGCCCCTTTCCATCTACGCGCTCCGGGAGAATCCCAAGCGCAGCCTCCGCGTCTCCGAGTACGCGTTCTCCGACCGCGAGAGCGAGGCCGAGTCCACCCCGACGCCCGCAGCCAAGGGCTTACGCGCCGGCGGCGGCGGCGGCGGCGGCGATGGCGAGCCCATGAGCTCGTTGTCGTACGCGGGAACGCCGGAGGAGGAGGTGGCGCTGGCCCTCATGATGCTCTCCCGCGACACCTGGCCGTCCGTCGAGCGCGGTGGCGGCGGGGGCGAGTACTCGGACGACGGGAGCGACGACGGCTACGCGCTCCCTCCGCCGTCTCCCGCTCCGGCGCCGGCGCCGGTGCCGGAGAAGCGGACGCGGTTCCAGTGCCCCGCGTGCAAGAAGGTGTTCCGGTCCTACCAGGCGCTCGGCGGCCACCGCGCCAGCCACGTCCGCGGCGGCAGGGGCGGCTGCTGCGCGCCTCCCGTCGCTCCTCCCCCTCAGCCGCATCCGCAGCCGCCATTGCCGGAGCACGACGCGGGCGAGGAAGACATGGACGGGAAGGCGCCGCCGCACGAGTGCCCCTACTGCTACCGCGTGTTCGCCTCCGGGCAAGCTCTGGGCGGCCACAAGAAGTCTCACGTCTGCTCCGCCGCCGCCGCCGCGGCCCATGCACAGACACCCGGCGGCGGCGCTCCTCCGCCCCAGCCCAAAATTCTCGGCATGATCGATCTCAACTTCGCGCCGCCCGTGGATGAGGTGGAGCTCTCCGCCGTGTCAGATCCCCACTTCCCCTCCAATCCACCAGGTCCTTGAAGCAAGAAAACCAGACTTGGCAATGGCGGAGATGATGATCTGAGGTGAGGCATAAATCGAAGAAACAGAAAGAATAACAAAAAGAGGGAAAAAAAAAGAGAAGAGAAGGATAAACACAAGAACATATTTTTTAGCCCCTTAGTTAATCTTCTGGTCGTACCTTTTAGTATTCCATTCCATTGATTTGTGTTCAGAATGTTTAATTAATATGTTACTACCATGCTGTTGCTTTGTTTTTTTTTGCCTGTTTAAGCTATGGAATCGATGTAGATTTGAGCAACTGACAGTGCAACAAGAACTAGCCCCT]
consensusID : consensus_532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1320 fasta sequence
[CCTCTGAAAGCTCGTATTTTTAGCTCTCCTAAGCTCTGTGCCTCATCAAGCTCTATCCAAGCTCTCGCCATGGCCAAGAACACATGCAAGCTCTGCTACCGCCGCTTCGGCAACCCCCGCGCCCTCGCCGGCCACATGCGCTCCCACTCAGTCGCCGCCTCGAGGTCGCAGATCTCCTCGACGTCCTCCGCGTCCACATCCGTCGCGGTCGGCGACGACGACGGCGGCGGTGATGCCAAGAGGCCCATCCAGGGATACGTGCTGCGGGAGAAGCCCAAGCGGAGGGTCCGCCTCGCCGAGTCCGACTTCTCGGATCGCGAGAGCGAGACGGAGTACTACTCCTCGCCGCCTCACGGCAAGCGCGCGAACACCGGATCGGGCGATGTCGAGCAGGTGAGCTCGGTGTCCGACGCCACGTCGGAGGAGGACGTAGCGCTGTCCCTCATGATGCTCTCCCGCGACACCTGGCCAGCCACGCCGCCGCCGCCGCCGCCCTACCGTCTCCGCGGCGCAGGCTACGACGACGGGAGCGACGGTGGCGACGCACCTCCGGCTCCGGCCGCAGCGGCCGCGCAGAAGCGGACGCGGTTCCAGTGCCCCGCATGCAAGAAGGTGTTCCGATCGTACCAGGCCCTCGGCGGCCATCGCGCTAGCCACATGCGCGGCGGCAGGGGCGGCTGCTGCGCGCCTCCGCCTAACCCTCCTCCTTCTCCCGCTACGCCTCTCCAGCCATTGCCGGAGTGCGACGGCGGCGAGGAGGAGGGCGCGAAGCCGCATCCTCACGAGTGCCCCTACTGCTTCCGCGTGTTCGCGTCCGGCCAAGCTCTGGGCGGCCACAAGCGGTCCCAGCTGTGCTCAGCCGCGGCGGCGGCCGCATCGGGCGACGATATTCCAGCCATGATTAAAAGCAACGGCTTCATTGATCTGAACCTCCCGGCGCCGTTCGACGACGTGGAGCTCTCCGCCGTTTCAGATCCTTTCCTCTCCTCGAAGCCAGGTTCTTGAAAGCAAGCAGAGCATGAGAGAGCGAGCATACTGGCTGTTCAGTGCTCTCTCTCCTTTCGGTTGATTCCAAAGAAGATGGTTAGAGCTATGGATTCGAGAGAAAGAGCTGCTTAACCAGGCAGCCGAAAAGGTAAAGAAAATATCATAAAAAGGAGACATCTTTGCTTTGGTAGTTTTTTTTTTCTCAGTTGTTTTGTTCATTCAGCTACAAAAATTGCTTGATGCTGTCCTCCATTCTGTTCTGTCTTTTTGTTTGTTTCAAGCTACCCGAACAGTGTACATTGGGGCAACTAGCAGAGCTTAGCATCTTGCTTA]
[+] EMBL AK121993 [CCTCTGAAAGCTCGTATTTTTAGCTCTCCTAAGCTCTGTGCCTCATCAAGCTCTATCCAAGCTCTCGCCATGGCCAAGAACACATGCAAGCTCTGCTACCGCCGCTTCGGCAACCCCCGCGCCCTCGCCGGCCACATGCGCTCCCACTCAGTCGCCGCCTCGAGGTCGCAGATCTCCTCGACGTCCTCCGCGTCCACATCCGTCGCGGTCGGCGACGACGACGGCGGCGGTGATGCCAAGAGGCCCATCCAGGGATACGTGCTGCGGGAGAAGCCCAAGCGGAGGGTCCGCCTCGCCGAGTCCGACTTCTCGGATCGCGAGAGCGAGACGGAGTACTACTCCTCGCCGCCTCACGGCAAGCGCGCGAACACCGGATCGGGCGATGTCGAGCAGGTGAGCTCGGTGTCCGACGCCACGTCGGAGGAGGACGTAGCGCTGTCCCTCATGATGCTCTCCCGCGACACCTGGCCAGCCACGCCGCCGCCGCCGCCGCCCTACCGTCTCCGCGGCGCAGGCTACGACGACGGGAGCGACGGTGGCGACGCACCTCCGGCTCCGGCCGCAGCGGCCGCGCAGAAGCGGACGCGGTTCCAGTGCCCCGCATGCAAGAAGGTGTTCCGATCGTACCAGGCCCTCGGCGGCCATCGCGCTAGCCACATGCGCGGCGGCAGGGGCGGCTGCTGCGCGCCTCCGCCTAACCCTCCTCCTTCTCCCGCTACGCCTCTCCAGCCATTGCCGGAGTGCGACGGCGGCGAGGAGGAGGGCGCGAAGCCGCATCCTCACGAGTGCCCCTACTGCTTCCGCGTGTTCGCGTCCGGCCAAGCTCTGGGCGGCCACAAGCGGTCCCAGCTGTGCTCAGCCGCGGCGGCGGCCGCATCGGGCGACGATATTCCAGCCATGATTAAAAGCAACGGCTTCATTGATCTGAACCTCCCGGCGCCGTTCGACGACGTGGAGCTCTCCGCCGTTTCAGATCCTTTCCTCTCCTCGAAGCCAGGTTCTTGAAAGCAAGCAGAGCATGAGAGAGCGAGCATACTGGCTGTTCAGTGCTCTCTCTCCTTTCGGTTGATTCCAAAGAAGATGGTTAGAGCTATGGATTCGAGAGAAAGAGCTGCTTAACCAGGCAGCCGAAAAGGTAAAGAAAATATCATAAAAAGGAGACATCTTTGCTTTGGTAGTTTTTTTTTTCTCAGTTGTTTTGTTCATTCAGCTACAAAAATTGCTTGATGCTGTCCTCCATTCTGTTCTGTCTTTTTGTTTGTTTCAAGCTACCCGAACAGTGTACATTGGGGCAACTAGCAGAGCTTAGCATCTTGCTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_532#0 GTGCGTTTGTAACTTCCTCCGCAGCTATCTCCCTTGCTCTCGCCATCTCGCCATTCTAGC 60
consensus_532#1 ------------------------------------CCTCTGAAAGCTCGTATTTTTAGC 24
* * * **** ** ****
consensus_532#0 TCCCGCAAAGCTCTCCCCCCCCGAGGCGAGCTCTCTCTGCTCCCGAGCGAGAGCTCTCGC 120
consensus_532#1 TCTC-CTAAGCTCTGTGCCTC---ATCAAGCTCTATCCA------------AGCTCTCGC 68
** * * ******* ** * * ****** ** *********
consensus_532#0 CATGGCGAAGAACGCATGCAAGCTCTGCTACCGCCGCTTCGCTAGCCCACGCGCCCTCGC 180
consensus_532#1 CATGGCCAAGAACACATGCAAGCTCTGCTACCGCCGCTTCGGCAACCCCCGCGCCCTCGC 128
****** ****** *************************** * *** ***********
consensus_532#0 GGGGCACATGCGGTCTCACTCTGTGGCGGCCGCCAACGCAGCCGCGGCTGCGGCGGCGGC 240
consensus_532#1 CGGCCACATGCGCTCCCACTCAGT------------------------------------ 152
** ******** ** ***** **
consensus_532#0 CGCAGCCGCGAAGCTGCAGATCTCATCGGCGTCGTCCGCGTCGACGTCGTTCACCGCGGC 300
consensus_532#1 CGCCGCCTCGAGGTCGCAGATCTCCTCGACGTCCTCCGCGTCCACATC---CGTCGCGGT 209
*** *** *** * ********* *** **** ******** ** ** * *****
consensus_532#0 CGATGGGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGCGTGGGATTCAAGAAGCCCCTTTC 360
consensus_532#1 CGGCGACGACGACGGCGGCGGTGATG------------------CCAAGAGGCCCATCCA 251
** * ** ** * * * ** * ***** **** *
consensus_532#0 CATCTACGCGCTCCGGGAGAATCCCAAGCGCAGCCTCCGCGTCTCCGAGTACGCGTTCTC 420
consensus_532#1 GGGATACGTGCTGCGGGAGAAGCCCAAGCGGAGGGTCCGCCTCGCCGAGTCCGACTTCTC 311
**** *** ******** ******** ** ***** ** ****** ** *****
consensus_532#0 CGACCGCGAGAGCGAGGCCGAGTCCACCCCGACGCCCGCAGCCAAGGGCTTACGCGCCGG 480
consensus_532#1 GGATCGCGAGAGCGAGACGGAGTACTACTCCTCGCC---GCCTCACGGCAAGCGCGCGAA 368
** ************ * **** * * * **** * * *** *****
consensus_532#0 CGGCGGCGGCGGCGGCGGCGATGGCGAGCCCATGAGCTCGTTGTCGTACGCGGGAACGCC 540
consensus_532#1 CACCGG-ATCGG-----GCGATGTCGAGCAGGTGAGCTCGGTGTCCGACGCC---ACGTC 419
* *** *** ****** ***** ******** **** **** *** *
consensus_532#0 GGAGGAGGAGGTGGCGCTGGCCCTCATGATGCTCTCCCGCGACACCTGGCCGTCCGT-CG 599
consensus_532#1 GGAGGAGGACGTAGCGCTGTCCCTCATGATGCTCTCCCGCGACACCTGGCCAGCCACGCC 479
********* ** ****** ******************************* ** *
consensus_532#0 AGCGCGGTGGCGGCGGGGGCGAGTACTCGGACGACGGGAGCGACGACGGCTACG-CGCTC 658
consensus_532#1 GCCGCCGCCGCCGCCCTACCGTCTCCGCGG-CGCAGGCTACGACGACGGGAGCGACGGTG 538
*** * ** ** ** * * *** ** ** ********* ** ** *
consensus_532#0 CCTCCGCCGTCTCCCGCTCCGGCGCCGGCGCCGGTGCCGGAGAAGCGGACGCGGTTCCAG 718
consensus_532#1 GCGACGC-ACCTCCGGCTCCGGCCGCAGCGGCCGCGC---AGAAGCGGACGCGGTTCCAG 594
* *** **** ******** * *** * * ** ********************
consensus_532#0 TGCCCCGCGTGCAAGAAGGTGTTCCGGTCCTACCAGGCGCTCGGCGGCCACCGCGCCAGC 778
consensus_532#1 TGCCCCGCATGCAAGAAGGTGTTCCGATCGTACCAGGCCCTCGGCGGCCATCGCGCTAGC 654
******** ***************** ** ******** *********** ***** ***
consensus_532#0 CACGTCCGCGGCGGCAGGGGCGGCTGCTGCGCGCCTCCCGTCGCTCCTCCCCCTCAGCCG 838
consensus_532#1 CACATGCGCGGCGGCAGGGGCGGCTGCTGCGCGCCTCCGCCTAACCCTCCTCCTTCTCCC 714
*** * ******************************** ***** *** **
consensus_532#0 CATCCGCAGCC---GCCATTGCCGGAGCACGACGCGGGCGAGGAAGACATGGACGGGAAG 895
consensus_532#1 GCTACGCCTCTCCAGCCATTGCCGGAGTGCGACGGCGGCGAGGAGGA---GGGCGCGAAG 771
* *** * ************* ***** ******** ** ** ** ****
consensus_532#0 GCGCCGCCGCACGAGTGCCCCTACTGCTACCGCGTGTTCGCCTCCGGGCAAGCTCTGGGC 955
consensus_532#1 CCGCATCCTCACGAGTGCCCCTACTGCTTCCGCGTGTTCGCGTCCGGCCAAGCTCTGGGC 831
*** ** ******************* ************ ***** ************
consensus_532#0 GGCCACAAGAAGTCTCACGTCTGCTCCGCCGCCGCCGCCGCGGCCCATGCACAGACACCC 1015
consensus_532#1 GGCCACAAGCGGTCCCAGCTGTGCTCAGCCGCGGCGGCGGCCGC------------ATCG 879
********* *** ** * ***** ***** ** ** ** ** * *
consensus_532#0 GGCGGCGGCGCTCCTCCGCCCCAGCCCAAAATTCTCGGCATGATCGATCTCAACTTCGCG 1075
consensus_532#1 GGCGACGATATTCC---AGCCATGATTAAAAGCAACGGCTTCATTGATCTGAACCTCCCG 936
**** ** *** ** * **** **** * ** ***** *** ** **
consensus_532#0 CCGCCCGTGGATGAGGTGGAGCTCTCCGCCGTGTCAGATCCCCACTTCCCCTCCAATCCA 1135
consensus_532#1 GCGCCGTTCGACGACGTGGAGCTCTCCGCCGTTTCAGATCCTTTCCTCTCCTCGAA---G 993
**** * ** ** ***************** ******** * ** **** **
consensus_532#0 CCAGGTCCTTGAA-GCAAGAAAACCA-GACTTGGCAATGGCGGAGATGATGATCTGAGGT 1193
consensus_532#1 CCAGGTTCTTGAAAGCAAGCAGAGCATGAGAGAGCGA--GCATACTGGCTGTTCAGTGCT 1051
****** ****** ***** * * ** ** ** * ** * * ** ** * * *
consensus_532#0 GAGGCATAAATCGAAGAAA--CAGAAAGAATAACAAAAAGAGGGAA----AAAAAAAGAG 1247
consensus_532#1 CTCTCTCCTTTCGGTTGATTCCAAAGAAGATGGTTAGAGCTATGGATTCGAGAGAAAGAG 1111
* *** * ** * * ** * * * * * * ******
consensus_532#0 AAG---AGAAGGATAAACACAAGAACATATTTTTTAGCCCCTTAGTTAATCTTCTGGTCG 1304
consensus_532#1 CTGCTTAACCAGGCAGCCGAAAAGGTAAAGAAAATATCATAAAAAGGAGACATCTTTGCT 1171
* * * * * ** * * ** * * * * *** *
consensus_532#0 TACCTTTTAGTATTCCATTCCATTGATTTGT--GTTCAGAATGTTTAATTAATATGTTAC 1362
consensus_532#1 TTGGTAGTTTTTTTTTTCTCAGTTGTTTTGTTCATTCAGC-TACAAAAATTGCTTGATGC 1230
* * * * ** ** *** ***** ***** * ** * ** * *
consensus_532#0 TACCATGCTGTTGCTTTGTTTTTTTTTGCCTGTTT-AAGCTATGGAATCGATGTAGATTT 1421
consensus_532#1 TGTCCT-CCATTCTGTTCTGTCTTTTTGTTTGTTTCAAGCTACCCGAACAGTGTACATTG 1289
* * * * ** ** * * ****** ***** ****** * * **** ***
consensus_532#0 GAGCAACTGACAGTGCAACAAGAACTAGCCCCT 1454
consensus_532#1 GGGCAACTAGCAGAGCT-TAGCATCTTGCTTA- 1320
* ****** *** ** * * ** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||