cluster # 5321

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Oryza sativa
cluster # 5321 cluster # 5321 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5321#0 length = 745 sequences # 3

consensusID : consensus_5321#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 745
fasta sequence

                              [AGTTTTTTTTTTTTTTTTAAATAGTAGTAGACAATAATTTCTTGCCTGAGAAATATAAATGTTGCATATCTGTACTTTTTCACAAACAGTACAAA-CGGTGGTTTGTAACAAAATCTTAAATGCACAGCACAAGATACAGCACCAGAGGGCTCCATAATCCTCTTCAATCTCAATAAAGTATAGAACTGTACAGTGTTCAAGGCACACCTCTCAAACCAACAAATTACCAAACCATTGAGCAGCATTACCATCTTTCTCAGCAAACTTTACAGCACCTGCCCTCCTAAGTTGTCTTTTCATTTGGGCATCTCACTCTTGCACCATACCCAATTCCTTCCGAAGAGTTGTCGGATAGGTTTTGCGATTGTCGGTAGGTCTTAGCTGCTCGATAGGGGCATTTCCTTGCTTCATCATGTAGCTCCATCTGTCTATCAAGAGGTAGAAGAAAAGCAGTAAGGAGAGCTCGAAAGTAAGGAGGCCGGTCCAAAGCTTCACACTTTTTGTGGTTCTCTCATGGGATGTGTGAAGGCCAATGTAAACATTTGTAATGCCAGTTGCCCAAATTGCGATGCCAAGAAACCCGTGGAGGAAGTCCACAAGCTCCTTACCTTAACACCTTTTTCTGGTCTGAAGAAACCGATAAACGGGTGGAGCCCCATGAATCCCTACAATGCCTATCCTACTCTCTGGGACTGTTAGAGGGGGGGGCCCGGGCCCCCAATTTCCCTTAATGGAGAGGTATAAC]

[+] EMBL CA757784             [AGTTTTTTTTTTTTTTTTTTATAGTAGTAGACAATAATTTTTTGCCTGAGAAATATAAATGTTGCATATCTGTACTTTTTCACAAACAGTACAAA CGGTGGTTTGAAACAAAATCTTAAATGCACAGCACAAGATACAGCACCAGAGGGCTCCATAATCCTCTTCAATCTCAATAAAGTATAGAACTGTACAGTGTTCAAGGCACACCTCTCAAACCAACAAATTACCAAACCATTGAGCAGCATTACCATCTTTCTCAGCAAACTTTACAGCACCTGCCCTCCTAAGTTGTCTTTTCATTTGGGCATCTCACTCTTGCACCATACCCAATTCCTTCCGAAGAGTTGTCGGATAGGTTTTGCGATTGTCGGTAGGTCTTAACTGCTCGATAGGGGCATTTCCTTGCTTCATCATGTAGCTCCATCTGTCTATCAAGAAGTAGAAGAAAAGCAGTAAGGAGAGCTCGAAAGTAAGGAGGCCGGTCCAAAGCTTCACACTTTTTGTGGTTCTCTCATGGGATGTGTGAAGGCCAATGTAAACATTTGTAATGCCAGTTGCCCAAATTGCGATGCCAAGAAACCCGTGGAGGAAGTCCACAAGCTCCTTACCTTAACACCTTTTTCTGGTCTGAAGAAACCGATAAACGGGTGGAGCCCCATGAATCCCTACAATGCCTATCCTACTCTCTGGGACTGTTAGAGGGGGGGGCCCGGGCCCCCAATTTCCCTTAATGGAGAGGTATAAC]
[-] EMBL AU184785             [             TTTTTAAATAGTAGTAGACAATAATTTCTTGCCTGAGAAATATAAATGTTGCATATCTGTACTTTTTCACAAACAGTACAAACCGGNGGTTTGTAACAAAATCTTAAATGCACAGCACAAGATACAGCACCAGAGGGCTCCATAATCCTCTTCAATCTCAATAAAGTATAGAACTGTACAGTGTTCAAGGCACACCTCTCAAACCAACAAATTACCAAACCATTGAGCAGCATTACCATCTTTCTCAGCAAACTTTACAGCACCTGCCCTCCTAAGTTGTCTTTTCATTTGGGCATCTCACTCTTGCACCATACCCAATTCCTTCCGAAGAGTTGTCGGATAGGTTTTGCGATTGTCGGTAGGTCTTAGCTGCTCGATAGGGGCATTTCCTTGCTTCATCATGTAGCTCCATCTGTCTATCAAGAGGTAGAAGAAAA                                                                                                                                                                                                                                                                                                        ]
[-] EMBL AU173807             [             TTTTTAAATAGTAGTAGACAATAATTTCTTGCCTGAGAAATATAAATGTTGCATATCTGTACTTTTTCACAAACAGTACAAA CGGTGGTTTGTAACAAAATCTTAAATGCACAGCACAAGATACAGCACCAGAGGGCTCCATAATCCTCTTCAATCTCAATAAAGTATANAACTGTACAGTGTTCAAGGCACACCTCTCAAACCAACAAATTACCAAACCATTGAGCAGCATTACCATCTTTCTCAGCAAACTTTACAGCACCTGCCCTCCTAAGTTGTCTTTTCATTTGGGCATCTCACTCTTGCACCATACCCAATTCCTTCCGAAGAGTTGTCGGATAGGTTTTGCGATTGTCGGTAGGTCTTAGCTGCTCGATAGGGGCATTTCCTTGCTTCATCATGTAGCTCCATCTGTCTATCAAGAGGTAGA                                                                                                                                                                                                                                                                                                              ]




>consensus_5321#0
AGTTTTTTTTTTTTTTTTAAATAGTAGTAGACAATAATTTCTTGCCTGAGAAATATAAAT
GTTGCATATCTGTACTTTTTCACAAACAGTACAAACGGTGGTTTGTAACAAAATCTTAAA
TGCACAGCACAAGATACAGCACCAGAGGGCTCCATAATCCTCTTCAATCTCAATAAAGTA
TAGAACTGTACAGTGTTCAAGGCACACCTCTCAAACCAACAAATTACCAAACCATTGAGC
AGCATTACCATCTTTCTCAGCAAACTTTACAGCACCTGCCCTCCTAAGTTGTCTTTTCAT
TTGGGCATCTCACTCTTGCACCATACCCAATTCCTTCCGAAGAGTTGTCGGATAGGTTTT
GCGATTGTCGGTAGGTCTTAGCTGCTCGATAGGGGCATTTCCTTGCTTCATCATGTAGCT
CCATCTGTCTATCAAGAGGTAGAAGAAAAGCAGTAAGGAGAGCTCGAAAGTAAGGAGGCC
GGTCCAAAGCTTCACACTTTTTGTGGTTCTCTCATGGGATGTGTGAAGGCCAATGTAAAC
ATTTGTAATGCCAGTTGCCCAAATTGCGATGCCAAGAAACCCGTGGAGGAAGTCCACAAG
CTCCTTACCTTAACACCTTTTTCTGGTCTGAAGAAACCGATAAACGGGTGGAGCCCCATG
AATCCCTACAATGCCTATCCTACTCTCTGGGACTGTTAGAGGGGGGGGCCCGGGCCCCCA
ATTTCCCTTAATGGAGAGGTATAAC

clustalw multiple alignements is not computed in this case