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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1963 fasta sequence
[GCCCCCTCGCCTTATCCGCATCCCCAACCGCCACTACAGGCAGCGGCGCAGCACCAGAGAGCGGAGGCGGCGGGAGGAGCGGGATTCGGAGGGGGAGCGCGGCCACGGAGGGGCACACGGGGGCGCAACAGGGTCGGGCGCTCGGCGCCATGGATGCTAAGAAGGGCTCGGGGGAGCCGGAGTTCTTCAGCGAGTACGGCGATGCGAGCCGGTACGAGGTCACCGAGGTGGTCGGCAAGGGCAGCTACGGCGTGGTGGCCGCCGCCGTCGACACTCACACCGGCGGGCGCGTCGCCATCAAGAAGATCAACGACGTCTTCGAGCACATCTCCGACGCCACCCGCATCCTCCGCGAGATCAAGCTACTCCGCCTCCTGCGCCACCCGGACATCGTCGAGATCAAGCACATCATGCTCCCACCCTCCCGCCGCGAGTTTCGCGACATTTACATTATCTTCGAACTCATGGAGTCCGATCTCCACCAGGTCATCAAGGCCAACGACGACCTCACCCCCGAGCACCACCAGTTCTTCCTCTACCAGCTGCTTCGTGGGATGAAGTACATTCATGCCGCCAGCGTCTTCCACCGGGACCTCAAGCCCAAGAACATTCTTGCCAATGCTGATTGCAAGGTCAAGATTTGTGACTTCGGCCTTGCTCGAGTGTCCTTCGACGACACTCCGTCCGCGATATTCTGGACGGATTACGTGGCAACAAGATGGTATCGCGCTCCAGAGTTGTGCGGCTCTTTCTTTTCAAAGTACACTCCTGCAATTGATATTTGGAGCGTCGGTTGTATATTTGCTGAAATGCTTATGGGAAAGCCACTTTTTCCTGGAAAGAATGTGGTACATCAATTGGATCTCATGACCGACTTACTTGGCTCTCCTTCAGGAGAAACTATTTCCAGGATTCGGAATGAGAAAGCTCGACGATATTTGGGCAACATGAGAAAAAAGCCTCGAGTGCCTTTTTCTCAGAAATTTCCTGGTGCAGACCCAATGGCTCTCCATTTGCTTGAACGGTTACTTGCTTTTGATCCCAAGGATCGGCCAACTGCTGCAGAGGCCTTAACAGATCCATACTTTACTGGATTGGCAAATTCGGAACGTGAACCCATAGCACAACCCATCTCAAAACTCGAGTTTGAGTTTGAGAGAAGGAAGCTAGCAAAAGATGATGTCCGGGAATTAATTTACAGAGAGATATTAGAGTACCATCCTCAGATGATGCAGAAATATCTTCGTGGTGGGGATCAGTCAAACTTTTTGTACCCCAGTGGGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAGAAGAAGGTGTTGCTCAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAGGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGTTGCATGTAGGTGAGCAACCGGGGCACTCATCAGTGACAGATGGACTGAACAAGCCACTCTTAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCATAAGATTGCTCAATTGAAAACATAAGTATCTCTTACTGTACAGGTGATCAATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAATTAGATATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCTCTCCCCTGATTTTTTCGAGGAGCTAAGATATATTTGACTTCAGCTCCTGATTTTAGTCGATGGATTTCACTGTCACCCTATACTTTATTCTTAGCCGAGCATAGGAGACTTAGTCACTGATTAGATCATGTAACTAGTGATAACAATGTATCAACATATGCAT]
[+] EMBL AK069424 [GCCCCCTCGCCTTATCCGCATCCCCAACCGCCACTACAGGCAGCGGCGCAGCACCAGAGAGCGGAGGCGGCGGGAGGAGCGGGATTCGGAGGGGGAGCGCGGCCACGGAGGGGCACACGGGGGCGCAACAGGGTCGGGCGCTCGGCGCCATGGATGCTAAGAAGGGCTCGGGGGAGCCGGAGTTCTTCAGCGAGTACGGCGATGCGAGCCGGTACGAGGTCACCGAGGTGGTCGGCAAGGGCAGCTACGGCGTGGTGGCCGCCGCCGTCGACACTCACACCGGCGGGCGCGTCGCCATCAAGAAGATCAACGACGTCTTCGAGCACATCTCCGACGCCACCCGCATCCTCCGCGAGATCAAGCTACTCCGCCTCCTGCGCCACCCGGACATCGTCGAGATCAAGCACATCATGCTCCCACCCTCCCGCCGCGAGTTTCGCGACATTTACATTATCTTCGAACTCATGGAGTCCGATCTCCACCAGGTCATCAAGGCCAACGACGACCTCACCCCCGAGCACCACCAGTTCTTCCTCTACCAGCTGCTTCGTGGGATGAAGTACATTCATGCCGCCAGCGTCTTCCACCGGGACCTCAAGCCCAAGAACATTCTTGCCAATGCTGATTGCAAGGTCAAGATTTGTGACTTCGGCCTTGCTCGAGTGTCCTTCGACGACACTCCGTCCGCGATATTCTGGACGGATTACGTGGCAACAAGATGGTATCGCGCTCCAGAGTTGTGCGGCTCTTTCTTTTCAAAGTACACTCCTGCAATTGATATTTGGAGCGTCGGTTGTATATTTGCTGAAATGCTTATGGGAAAGCCACTTTTTCCTGGAAAGAATGTGGTACATCAATTGGATCTCATGACCGACTTACTTGGCTCTCCTTCAGGAGAAACTATTTCCAGGATTCGGAATGAGAAAGCTCGACGATATTTGGGCAACATGAGAAAAAAGCCTCGAGTGCCTTTTTCTCAGAAATTTCCTGGTGCAGACCCAATGGCTCTCCATTTGCTTGAACGGTTACTTGCTTTTGATCCCAAGGATCGGCCAACTGCTGCAGAGGCCTTAACAGATCCATACTTTACTGGATTGGCAAATTCGGAACGTGAACCCATAGCACAACCCATCTCAAAACTCGAGTTTGAGTTTGAGAGAAGGAAGCTAGCAAAAGATGATGTCCGGGAATTAATTTACAGAGAGATATTAGAGTACCATCCTCAGATGATGCAGAAATATCTTCGTGGTGGGGATCAGTCAAACTTTTTGTACCCCAGTGGGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAGAAGAAGGTGTTGCTCAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAGGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGTTGCATGTAGGTGAGCAACCGGGGCACTCATCAGTGACAGATGGACTGAACAAGCCACTCTTAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCATAAGATTGCTCAATTGAAAACATAAGTATCTCTTACTGTACAGGTGATCAATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAATTAGATATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCTCTCCCCTGATTTTTTCGAGGAGCTAAGATATATTTGACTTCAGCTCCTGATTTTAGTCGATGGATTTCACTGTCACCCTATACTTTATTCTTAGCCGAGCATAGGAGACTTAGTCACTGATTAGATCATGTAACTAGTGATAACAATGTATCAACATATGCAT]
consensusID : consensus_5328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 691 fasta sequence
[GGAATTAATTTACAGAGAGATATTAGAGTACCATCCTCAGATGATGCAGAAATATCTTCGTGGTGGGGATCAGTCAAACTTTTTGTACCCCAGTGGGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAGAAGAAGGTGTTGCTCAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAGGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGTTGCATGTAGGTGAGCAACCGGGGCACTCATCAGTGACAGATGGACTGAACAAGCCACTCTTAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCATAAGATTGCTCAATTGAAAACATAAGTATCTCTTACTGTACAGGTGATCAATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAATTAGATATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCTCTCCCCTGATTTTTTCGAGGAGCTAAGATATATTTGACTTCAGCTCCTGATTTTAGCCTCGTGCCGAATCCGGCACG]
[-] EMBL CA998105 [GGAATTAATTTACAGAGAGATATTAGAGTACCATCCTCAGATGATGCAGAAATATCTTCGTGGTGGGGATCAGTCAAACTTTTTGTACCCCAGTGGGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAGAAGAAGGTGTTGCTCAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAAGGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGTTGCATGTAGGTGAGCAACCGGGGCACTCATCAGTGACAGATGGACTGAACAAGCCACTCTTAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCCGCATAAGATTGCTCAATTGAAAACATAAGTATCTCTTACTGTACAGGTGATCAATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAATTAGATATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCTCTCCCCTGATTTTTTCGAGGAGCTAAGATATATTTGACTTCAGCTCCTGATTTTAGCCTCGTGCCGAATC ]
[-] EMBL CA998052 [ CCGCAGCTAAGGCAGCATGTTTCTTTACCAAGGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGTTGCATGTAGGTGAGCAACCGGGGCACTCATCAGTGACAGATGGACTGAACAAGCCACTCTTAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAAAAGAAAAGCGAGAAAAAGATGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATGGGGTGCAGCATAAGATTGCTCAATTGAAAACATAAGTATCTCTTACTGTACAGGTGATCAATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAATTAGATATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCTCTCCCCTGATTTTTTCGAGGAGCTAAGAGATATTTGACTTCAGCTCCTGATTTTAGCCTCGTGCCGAATTCGGCACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5328#0 GCCCCCTCGCCTTATCCGCATCCCCAACCGCCACTACAGGCAGCGGCGCAGCACCAGAGA 60
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 GCGGAGGCGGCGGGAGGAGCGGGATTCGGAGGGGGAGCGCGGCCACGGAGGGGCACACGG 120
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 GGGCGCAACAGGGTCGGGCGCTCGGCGCCATGGATGCTAAGAAGGGCTCGGGGGAGCCGG 180
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 AGTTCTTCAGCGAGTACGGCGATGCGAGCCGGTACGAGGTCACCGAGGTGGTCGGCAAGG 240
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 GCAGCTACGGCGTGGTGGCCGCCGCCGTCGACACTCACACCGGCGGGCGCGTCGCCATCA 300
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 AGAAGATCAACGACGTCTTCGAGCACATCTCCGACGCCACCCGCATCCTCCGCGAGATCA 360
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 AGCTACTCCGCCTCCTGCGCCACCCGGACATCGTCGAGATCAAGCACATCATGCTCCCAC 420
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 CCTCCCGCCGCGAGTTTCGCGACATTTACATTATCTTCGAACTCATGGAGTCCGATCTCC 480
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 ACCAGGTCATCAAGGCCAACGACGACCTCACCCCCGAGCACCACCAGTTCTTCCTCTACC 540
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 AGCTGCTTCGTGGGATGAAGTACATTCATGCCGCCAGCGTCTTCCACCGGGACCTCAAGC 600
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 CCAAGAACATTCTTGCCAATGCTGATTGCAAGGTCAAGATTTGTGACTTCGGCCTTGCTC 660
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 GAGTGTCCTTCGACGACACTCCGTCCGCGATATTCTGGACGGATTACGTGGCAACAAGAT 720
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 GGTATCGCGCTCCAGAGTTGTGCGGCTCTTTCTTTTCAAAGTACACTCCTGCAATTGATA 780
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 TTTGGAGCGTCGGTTGTATATTTGCTGAAATGCTTATGGGAAAGCCACTTTTTCCTGGAA 840
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 AGAATGTGGTACATCAATTGGATCTCATGACCGACTTACTTGGCTCTCCTTCAGGAGAAA 900
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 CTATTTCCAGGATTCGGAATGAGAAAGCTCGACGATATTTGGGCAACATGAGAAAAAAGC 960
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 CTCGAGTGCCTTTTTCTCAGAAATTTCCTGGTGCAGACCCAATGGCTCTCCATTTGCTTG 1020
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 AACGGTTACTTGCTTTTGATCCCAAGGATCGGCCAACTGCTGCAGAGGCCTTAACAGATC 1080
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 CATACTTTACTGGATTGGCAAATTCGGAACGTGAACCCATAGCACAACCCATCTCAAAAC 1140
consensus_5328#1 ------------------------------------------------------------
consensus_5328#0 TCGAGTTTGAGTTTGAGAGAAGGAAGCTAGCAAAAGATGATGTCCGGGAATTAATTTACA 1200
consensus_5328#1 ----------------------------------------------GGAATTAATTTACA 14
**************
consensus_5328#0 GAGAGATATTAGAGTACCATCCTCAGATGATGCAGAAATATCTTCGTGGTGGGGATCAGT 1260
consensus_5328#1 GAGAGATATTAGAGTACCATCCTCAGATGATGCAGAAATATCTTCGTGGTGGGGATCAGT 74
************************************************************
consensus_5328#0 CAAACTTTTTGTACCCCAGTGGGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAGAAG 1320
consensus_5328#1 CAAACTTTTTGTACCCCAGTGGGGTGGATCGTTTTAAGAGGCAATTTGCTCATCTAGAAG 134
************************************************************
consensus_5328#0 AAGGTGTTGCTCAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAA 1380
consensus_5328#1 AAGGTGTTGCTCAGGGTGACAAGACTAGCCCGCAGCTAAGGCAGCATGTTTCTTTACCAA 194
************************************************************
consensus_5328#0 GGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGT 1440
consensus_5328#1 GGGAAAGAGTTGTTAGGAATGGTGATGAACCTGATCCAACTGCAGATTACTGCATAAAGT 254
************************************************************
consensus_5328#0 TGCATGTAGGTGAGCAACCGGGGCACTCATCAGTGACAGATGGACTGAACAAGCCACTCT 1500
consensus_5328#1 TGCATGTAGGTGAGCAACCGGGGCACTCATCAGTGACAGATGGACTGAACAAGCCACTCT 314
************************************************************
consensus_5328#0 TAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAA 1560
consensus_5328#1 TAAGTGCTCGTAACTTCCTGAAGAGCGAAAGCATCGGTGCTTCCCAGTGTGTTGTCATAA 374
************************************************************
consensus_5328#0 AAGAAAAGCGAGAAAAAGATGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATG 1620
consensus_5328#1 AAGAAAAGCGAGAAAAAGATGAAGAATCTATGTCAGAATATATGAATGAAGCAGCTGATG 434
************************************************************
consensus_5328#0 GGGTGCCGCATAAGATTGCTCAATTGAAAACATAAGTATCTCTTACTGTACAGGTGATCA 1680
consensus_5328#1 GGGTGCCGCATAAGATTGCTCAATTGAAAACATAAGTATCTCTTACTGTACAGGTGATCA 494
************************************************************
consensus_5328#0 ATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAATTAGA 1740
consensus_5328#1 ATCCATATAGCAGCACGTAGATATAGTCTAAACTTAAGAAGGGCAGATAAATGAATTAGA 554
************************************************************
consensus_5328#0 TATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCT 1800
consensus_5328#1 TATTTAAGTAGCCACAGTTTTTCTCGGCTCCTTGTTGGGATCCATGTTGTGTTGAAATCT 614
************************************************************
consensus_5328#0 CTCCCCTGATTTTTTCGAGGAGCTAAGATATATTTGACTTCAGCTCCTGATTTTAGTCGA 1860
consensus_5328#1 CTCCCCTGATTTTTTCGAGGAGCTAAGATATATTTGACTTCAGCTCCTGATTTTAGCCTC 674
******************************************************** *
consensus_5328#0 TGGATTTCACTGTCACCCTATACTTTATTCTTAGCCGAGCATAGGAGACTTAGTCACTGA 1920
consensus_5328#1 GTGCCGAATCCGGCACG------------------------------------------- 691
* * * ***
consensus_5328#0 TTAGATCATGTAACTAGTGATAACAATGTATCAACATATGCAT 1963
consensus_5328#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||