cluster # 5330

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5330 cluster # 5330 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5330#0 length = 533 sequences # 2

consensus_5330#1 length = 75 sequences # 1

consensusID : consensus_5330#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 533
fasta sequence

                              [AAGATTGCGGACATCATCCGAAGCCGAAAGATTGTGCTCCACCTCCACACTGACTGCATCAGCAGAAACTGTTGCAGCAATACCAGCAAAGGTAAAGACACTTTGCTCGAGCTTGCCACCAGGGATCATCATACCAGCCAGGCCAGCCGGTGCTCAGGAGCTATGTGAAATGCTCCAGGCCCAGCACGGAGTTGCTCAGCCACAGCATAGTGAAGCTGCCTGAGATCGTAGTGGAGTAGTAGGAAATTCACAATGTCTGCACATATCATCAGAAAATATAGCAACCTCGTCATCGGCGAAATGTAGAAAAAGCCGATGCTGCTATGCGTTTGATC-TTTTTTTTTTAGTCGTGCTGCTTTTGCTTCAGCTAAAGAAAAAAATGTTGTTTGTAGAGGTGTCTGGTTTTGAGACGAACCAGGTGTTTGAATCCTGAAATGTATAAGCCTGCTTTGTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BI804363             [AAGATTGCGGACATCATCCGAAGCCGAAAGATTGTGCTCCACCTCCACACTGACTGCATCAGCAGAAACTGTTGCAGCAATACCAGCAAAGGTAAAGACACTTTGCTCGAGCTTGCCACCAGGGATCATCATACCAGCCAGGCCAGCCGGTGCTCAGGAGCTATGTGAAATGCTCCAGGCCCAGCACGGAGTTGCTCAGCCACAGCATAGTGAAGCTGCCTGAGATCGTAGTGGAGTAGTAGGAAATTCACAATGTCTGCACATATCATCAGAAAATATAGCAACCTCGTCATCGGCGAAATGTAGAAAAAGCCGATGCTGCTATGCGTTTGATC TTTTTTTTTTAGTCGTGCTGCTTTTGCTTCAGCTAAAGAAAAAAATGTTGTTTGTAGAGGTGTCTGGTTTTGAGACGAACCAGGTGTTTGAATCCTGAAATGTATAAGCCTGCTTTGTGGTTTAAAAAAAAAA                                                                 ]
[+] EMBL CF314285             [                                                                                                                                                                                                                                                       cagCAATGTCTGCACATATCATCAGAAAATATAGCAACCTCGTCATCGGCGAAATGTAGAAAAAGCCGATGCTGCTATGCGTTTGATCTTTTTTTTTTTAGTCGTGCTGCTTTTGCTTCAGCTAAAGAAAAAAATGTTGTTTGTAGAGGTGTCTGGTTTTGAGACGAAGCAGGTGTTTGAATCATGAAATGTATAAGCCTGCTTTGTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5330#0
AAGATTGCGGACATCATCCGAAGCCGAAAGATTGTGCTCCACCTCCACACTGACTGCATC
AGCAGAAACTGTTGCAGCAATACCAGCAAAGGTAAAGACACTTTGCTCGAGCTTGCCACC
AGGGATCATCATACCAGCCAGGCCAGCCGGTGCTCAGGAGCTATGTGAAATGCTCCAGGC
CCAGCACGGAGTTGCTCAGCCACAGCATAGTGAAGCTGCCTGAGATCGTAGTGGAGTAGT
AGGAAATTCACAATGTCTGCACATATCATCAGAAAATATAGCAACCTCGTCATCGGCGAA
ATGTAGAAAAAGCCGATGCTGCTATGCGTTTGATCTTTTTTTTTTAGTCGTGCTGCTTTT
GCTTCAGCTAAAGAAAAAAATGTTGTTTGTAGAGGTGTCTGGTTTTGAGACGAACCAGGT
GTTTGAATCCTGAAATGTATAAGCCTGCTTTGTGGTTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_5330#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 75
fasta sequence

                              [GGGGATGGTCTTGAGACGAAGCAGGTGTTTGAATCATGAAATGTATAAGCCTGCTTTGTGGTTTTCTTTAAAAAA]

[+] EMBL CF931999             [GGGGATGGTCTTGAGACGAAGCAGGTGTTTGAATCATGAAATGTATAAGCCTGCTTTGTGGTTTTCTTTAAAAAA]




>consensus_5330#1
GGGGATGGTCTTGAGACGAAGCAGGTGTTTGAATCATGAAATGTATAAGCCTGCTTTGTG
GTTTTCTTTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5330#0      AAGATTGCGGACATCATCCGAAGCCGAAAGATTGTGCTCCACCTCCACACTGACTGCATC 60
consensus_5330#1      ------------------------------------------------------------
                                                                                  

consensus_5330#0      AGCAGAAACTGTTGCAGCAATACCAGCAAAGGTAAAGACACTTTGCTCGAGCTTGCCACC 120
consensus_5330#1      ------------------------------------------------------------
                                                                                  

consensus_5330#0      AGGGATCATCATACCAGCCAGGCCAGCCGGTGCTCAGGAGCTATGTGAAATGCTCCAGGC 180
consensus_5330#1      ------------------------------------------------------------
                                                                                  

consensus_5330#0      CCAGCACGGAGTTGCTCAGCCACAGCATAGTGAAGCTGCCTGAGATCGTAGTGGAGTAGT 240
consensus_5330#1      ------------------------------------------------------------
                                                                                  

consensus_5330#0      AGGAAATTCACAATGTCTGCACATATCATCAGAAAATATAGCAACCTCGTCATCGGCGAA 300
consensus_5330#1      ------------------------------------------------------------
                                                                                  

consensus_5330#0      ATGTAGAAAAAGCCGATGCTGCTATGCGTTTGATCTTTTTTTTTTAGTCGTGCTGCTTTT 360
consensus_5330#1      ------------------------------------------------------------
                                                                                  

consensus_5330#0      GCTTCAGCTAAAGAAAAAAATGTTGTTTGTAGAGGTGTCTGGTTTTGAGACGAACCAGGT 420
consensus_5330#1      ----------------------------------GGGGATGGTCTTGAGACGAAGCAGGT 26
                                                        * *  **** ********** *****

consensus_5330#0      GTTTGAATCCTGAAATGTATAAGCCTGCTTTGTGGTTTAAAAAAAAAAAAAAAAAAAAAA 480
consensus_5330#1      GTTTGAATCATGAAATGTATAAGCCTGCTTTGTGGTTTTCTTTAAAAAA----------- 75
                      ********* ****************************     ******           

consensus_5330#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 533
consensus_5330#1      -----------------------------------------------------