These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5330#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 533 fasta sequence [AAGATTGCGGACATCATCCGAAGCCGAAAGATTGTGCTCCACCTCCACACTGACTGCATCAGCAGAAACTGTTGCAGCAATACCAGCAAAGGTAAAGACACTTTGCTCGAGCTTGCCACCAGGGATCATCATACCAGCCAGGCCAGCCGGTGCTCAGGAGCTATGTGAAATGCTCCAGGCCCAGCACGGAGTTGCTCAGCCACAGCATAGTGAAGCTGCCTGAGATCGTAGTGGAGTAGTAGGAAATTCACAATGTCTGCACATATCATCAGAAAATATAGCAACCTCGTCATCGGCGAAATGTAGAAAAAGCCGATGCTGCTATGCGTTTGATC-TTTTTTTTTTAGTCGTGCTGCTTTTGCTTCAGCTAAAGAAAAAAATGTTGTTTGTAGAGGTGTCTGGTTTTGAGACGAACCAGGTGTTTGAATCCTGAAATGTATAAGCCTGCTTTGTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI804363 [AAGATTGCGGACATCATCCGAAGCCGAAAGATTGTGCTCCACCTCCACACTGACTGCATCAGCAGAAACTGTTGCAGCAATACCAGCAAAGGTAAAGACACTTTGCTCGAGCTTGCCACCAGGGATCATCATACCAGCCAGGCCAGCCGGTGCTCAGGAGCTATGTGAAATGCTCCAGGCCCAGCACGGAGTTGCTCAGCCACAGCATAGTGAAGCTGCCTGAGATCGTAGTGGAGTAGTAGGAAATTCACAATGTCTGCACATATCATCAGAAAATATAGCAACCTCGTCATCGGCGAAATGTAGAAAAAGCCGATGCTGCTATGCGTTTGATC TTTTTTTTTTAGTCGTGCTGCTTTTGCTTCAGCTAAAGAAAAAAATGTTGTTTGTAGAGGTGTCTGGTTTTGAGACGAACCAGGTGTTTGAATCCTGAAATGTATAAGCCTGCTTTGTGGTTTAAAAAAAAAA ] [+] EMBL CF314285 [ cagCAATGTCTGCACATATCATCAGAAAATATAGCAACCTCGTCATCGGCGAAATGTAGAAAAAGCCGATGCTGCTATGCGTTTGATCTTTTTTTTTTTAGTCGTGCTGCTTTTGCTTCAGCTAAAGAAAAAAATGTTGTTTGTAGAGGTGTCTGGTTTTGAGACGAAGCAGGTGTTTGAATCATGAAATGTATAAGCCTGCTTTGTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_5330#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 75 fasta sequence [GGGGATGGTCTTGAGACGAAGCAGGTGTTTGAATCATGAAATGTATAAGCCTGCTTTGTGGTTTTCTTTAAAAAA] [+] EMBL CF931999 [GGGGATGGTCTTGAGACGAAGCAGGTGTTTGAATCATGAAATGTATAAGCCTGCTTTGTGGTTTTCTTTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5330#0 AAGATTGCGGACATCATCCGAAGCCGAAAGATTGTGCTCCACCTCCACACTGACTGCATC 60 consensus_5330#1 ------------------------------------------------------------ consensus_5330#0 AGCAGAAACTGTTGCAGCAATACCAGCAAAGGTAAAGACACTTTGCTCGAGCTTGCCACC 120 consensus_5330#1 ------------------------------------------------------------ consensus_5330#0 AGGGATCATCATACCAGCCAGGCCAGCCGGTGCTCAGGAGCTATGTGAAATGCTCCAGGC 180 consensus_5330#1 ------------------------------------------------------------ consensus_5330#0 CCAGCACGGAGTTGCTCAGCCACAGCATAGTGAAGCTGCCTGAGATCGTAGTGGAGTAGT 240 consensus_5330#1 ------------------------------------------------------------ consensus_5330#0 AGGAAATTCACAATGTCTGCACATATCATCAGAAAATATAGCAACCTCGTCATCGGCGAA 300 consensus_5330#1 ------------------------------------------------------------ consensus_5330#0 ATGTAGAAAAAGCCGATGCTGCTATGCGTTTGATCTTTTTTTTTTAGTCGTGCTGCTTTT 360 consensus_5330#1 ------------------------------------------------------------ consensus_5330#0 GCTTCAGCTAAAGAAAAAAATGTTGTTTGTAGAGGTGTCTGGTTTTGAGACGAACCAGGT 420 consensus_5330#1 ----------------------------------GGGGATGGTCTTGAGACGAAGCAGGT 26 * * **** ********** ***** consensus_5330#0 GTTTGAATCCTGAAATGTATAAGCCTGCTTTGTGGTTTAAAAAAAAAAAAAAAAAAAAAA 480 consensus_5330#1 GTTTGAATCATGAAATGTATAAGCCTGCTTTGTGGTTTTCTTTAAAAAA----------- 75 ********* **************************** ****** consensus_5330#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 533 consensus_5330#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||