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Oryza sativa
cluster # 5345 cluster # 5345       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5345#0 length = 1240 sequences # 3  

consensusID : consensus_5345#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1240
fasta sequence
                              [TATAGTTGACAACCGATCAAAACGGATTGTATTACTCAGATCTGTGTTCAAATCGTACAGAATGAGTGGGTAGGGTGTACAACAACACATGGATGGGATAAATATGGCGCGCCGATGCGTCTGCATCGTTCGCAACGGAGCTGATCTTTGTTAGTTCTGTTGCCTTATGTACCATCCTAAAGTCAGGAGTTCCTGAAAAATAACCTACGTATCAATTATACACAAGCGTCTGAACATTTTGTCACGAGGTAGCCATGCTATCTTCTTCTTTGGTTGGTGGCAACACGTCTGCCTTCTGCTCCTGCTCTGGCACCATCTCAGTGTCAGTTTTCATAGTGGTTTGATTATGCTCAGCACACAGATTTGCTTTGCTGTCATCTGTATCACCCGTTTTACTCAGATCAGCAGGATGCTGCACAGTCATTTTGGGGGCATTCAAAGGACTTCTTAGGGTGCCCTTGTTTGCCCACATTAGGCCACAGGCATTACAGAGGGACCTTGGACCAGCTGGCCCACGACGCATTGCTGGAGTAAGCCTTGAGCTGATGCCACAATTTTGGCAATGCGTTTCTCGGATATGATCATCCTCGCCATTGGCTGTGGAGCCGCATGGTGCAGAAGAACATGAACCATCACCAAAGTCTGCCCTTCCAGCAAACTGGCCTTTACGTCGTTTCATCTTTTGAGCAACCTCCTTACGAACACTGTATCTTATTTTCTTATCAAAACATCTTTCCTTCCTCTTCTCACGAAACCTCATTAAGGAAGCAATTCTTCTGGCAGCCACAGTTGTACTCTTTTCATCGAATGTGGTAGGTACAGCCATGCTTACTAAACCAGGAGGCATGTCAGACCCTCCAAGTACCAATAGAACAGCCTGAACCTGTATAACACTAACATAACAGTCAGTCATGTATATCAACTACAAATGGCCATGAGCAATATAATAGCCAAAGCAATAAACAGCAGCTCATCACTAGTAACATAAGCACATGATCACCCTTGAAACTTTACTATGGTTGCATCACAATTGATTCATGGGACAGGAAAAGCTTTTGGGGCGGGACGGGGTCGAAGACGTAGACCTCCCCCTGGTACACGAGCGTCAGCTGCTCCGACGCCGCGCTCAGGAGCGCCTCCGCCGCCGCGGACTCCACCGCGCCGTCGCCGGCGGCGCCATCGTCCGCCGGGGGATCGCGGCCGTCCGCCGGGGGCTCCGCCGCCATCGGCTAGGGATCGG]

[+] EMBL CB630582             [TATAGTTGACAACCGATCAAAACGGATTGTATTACTCAGATCTGTGTTCAAATCGTACAGAATGAGTGGGTAGGGTGTACAACAACACATGGATGGGATAAATATGGCGCGCCGATGCGTCTGCATCGTTCGCAACGGAGCTGATCTTTGTTAGTTCTGTTGCCTTATGTACCATCCTAAAGTCAGGAGTTCCTGAAAAATAACCTACGTATCAATTATACACAAGCGTCTGAACATTTTGTCACGAGGTAGCCATGCTATCTTCTTCTTTGGTTGGTGGCAACACGTCTGCCTTCTGCTCCTGCTCTGGCACCATCTCAGTGTCAGTTTTCATAGTGGTTTGATTATGCTCAGCACACAGATTTGCTTTGCTGTCATCTGTATCACCCGTTTTACTCAGATCAGCAGGATGCTGCACAGTCATTTTGGGGGCATTCAAAGGACTTCTTAGGGTGCCCTTGTTTGCCCACATTAGGCCACAGGCATTACAGAGGGACCTTGGACCAGCTGGCCCACGACGCATTGCTGGAGTAAGCCTTGAGCTGATGCCACAATTTTGGCAATGCGTTTCTCGGATATGATCATCCTCGCCATTGGCTGTGGAGCCGCATGGTGCAGAAGAACATGAACCATCACCAAAGTCTGCCCTTCCAGCAAACTGGCCTTTACGTCGTTTCATCTTTTGAGCAACCTCCTTACGAACACTGTATCTTATTTTCTTATCAAAACATCTTTCCTTCCTCTTCTCACGAAACCTCATTAAGGAAGCAATTCTTCTGGCAGCCACAGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AU173881             [tttttTTGACAACCGATCAAAACGGATTGTATTACTCANATCTGTGTTCAAATCGTACAGAATGAGTGGGTAGGGTGTACAACAACACATGGATTTGATAAATATGGCGCGCCGATGCGTCTGCATCGTTCGCAACGGAGCTGATCTTTGTTAGTTCTGTTGCCTTATGTACCATCCTAAAGTCAGGAGTTCCTGAAAAATAACCTACGTATCAATTATACACAAGCGTCTGAACATTTTGTCACGAGGTAGCCATGCTATCTTCTTCTTTGGTTGGNGGCAACACGTCTGCCTTCTGCTCCTGCTCTGGCACCATCTCAGTGTCAGTTTTCATAGTGGTTTGATTATGCTCAGCACACAGATTTGCTTTGCTGNCATCTGTATCACCCGTTTTACTCANATCAGCAGGATGCTGCACAGTCATTTTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB655376             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACAATTTTGGCAATGCGTTTCTCGGATATGATCATCCTCGCCATTGGCTGTGGAGCCGCATGGTGCAGAAGAACATGAACCATCACCAAAGTCTGCCCTTCCAGCAAACTGGCCTTTACGTCGTTTCATCTTTTGAGCAACCTCCTTACGAACACTGTATCTTATTTTCTTATCAAAACATCTTTCCTTCCTCTTCTCACGAAACCTCATTAAGGAAGCAACTCTTCTGGCAGCCACAGTTGTACTCTTTTCATCGAATGTGGTAGGTACAGCCATGCTTACTAAACCAGGAGGCATGTCAGACCCTCCAAGTACCAATAGAACAGCCTGAACCTGTATAACACTAACATAACAGTCAGTCATGTATATCAACTACAAATGGCCATGAGCAATATAATAGCCAAAGCAATAAACAGCAGCTCATCACTAGTAACATAAGCACATGATCACCCTTGAAACTTTACTATGGTTGCATCACAATTGATTCATGGGACAGGAAAAGCTTTTGGGGCGGGACGGGGTCGAAGACGTAGACCTCCCCCTGGTACACGAGCGTCAGCTGCTCCGACGCCGCGCTCAGGAGCGCCTCCGCCGCCGCGGACTCCACCGCGCCGTCGCCGGCGGCGCCATCGTCCGCCGGGGGATCGCGGCCGTCCGCCGGGGGCTCCGCCGCCATCGGCTAGGGATCGG]


>consensus_5345#0 TATAGTTGACAACCGATCAAAACGGATTGTATTACTCAGATCTGTGTTCAAATCGTACAG AATGAGTGGGTAGGGTGTACAACAACACATGGATGGGATAAATATGGCGCGCCGATGCGT CTGCATCGTTCGCAACGGAGCTGATCTTTGTTAGTTCTGTTGCCTTATGTACCATCCTAA AGTCAGGAGTTCCTGAAAAATAACCTACGTATCAATTATACACAAGCGTCTGAACATTTT GTCACGAGGTAGCCATGCTATCTTCTTCTTTGGTTGGTGGCAACACGTCTGCCTTCTGCT CCTGCTCTGGCACCATCTCAGTGTCAGTTTTCATAGTGGTTTGATTATGCTCAGCACACA GATTTGCTTTGCTGTCATCTGTATCACCCGTTTTACTCAGATCAGCAGGATGCTGCACAG TCATTTTGGGGGCATTCAAAGGACTTCTTAGGGTGCCCTTGTTTGCCCACATTAGGCCAC AGGCATTACAGAGGGACCTTGGACCAGCTGGCCCACGACGCATTGCTGGAGTAAGCCTTG AGCTGATGCCACAATTTTGGCAATGCGTTTCTCGGATATGATCATCCTCGCCATTGGCTG TGGAGCCGCATGGTGCAGAAGAACATGAACCATCACCAAAGTCTGCCCTTCCAGCAAACT GGCCTTTACGTCGTTTCATCTTTTGAGCAACCTCCTTACGAACACTGTATCTTATTTTCT TATCAAAACATCTTTCCTTCCTCTTCTCACGAAACCTCATTAAGGAAGCAATTCTTCTGG CAGCCACAGTTGTACTCTTTTCATCGAATGTGGTAGGTACAGCCATGCTTACTAAACCAG GAGGCATGTCAGACCCTCCAAGTACCAATAGAACAGCCTGAACCTGTATAACACTAACAT AACAGTCAGTCATGTATATCAACTACAAATGGCCATGAGCAATATAATAGCCAAAGCAAT AAACAGCAGCTCATCACTAGTAACATAAGCACATGATCACCCTTGAAACTTTACTATGGT TGCATCACAATTGATTCATGGGACAGGAAAAGCTTTTGGGGCGGGACGGGGTCGAAGACG TAGACCTCCCCCTGGTACACGAGCGTCAGCTGCTCCGACGCCGCGCTCAGGAGCGCCTCC GCCGCCGCGGACTCCACCGCGCCGTCGCCGGCGGCGCCATCGTCCGCCGGGGGATCGCGG CCGTCCGCCGGGGGCTCCGCCGCCATCGGCTAGGGATCGG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)