cluster # 5353

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5353 cluster # 5353 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5353#0 length = 1108 sequences # 2

consensus_5353#1 length = 450 sequences # 1

consensusID : consensus_5353#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1108
fasta sequence

                              [AGCTACTTTAAACAATGAATTGGATAGCGTGGAATTGGAGGTTGATCCATTTTCCCCAGTTTTGAAGGCATCAACGCCAGGAGGATACTACTAATCATGATTTGCCAGTTCTTCCATCTCATCTGGAATTAAGTGACGATGAGAAAATCTTGTTGCACAAATTAGCAATTAGACGGATAATCGATGATTACAAGAAAAACAGCGTTAACACAAGATTTTCCCTCCTTGCTCATTTGATTGCCCAGAGTACTGCTGATGACAATATTATGGATTTGATTCAGAGACACATTATATACCATTATCATGATCAGGGTCATGAACTGGCAATGCATGTGCTGTATCAGCTGCACAGTGTGAGTGTTGCTGATTCACCAGAAAGCACCGCACCTGCTTCTAAAAATTATGAGAACTTCTTTATATCACTTGCAAGGTCCTTGATTCACTCGCTACCTGCTTCAGACAAATCTTTTAGCAAATTTCTGTGTGATGCACCATACTTGCCTGAGTCTATGCTTAAATTACTGGAGGATATTTGTGTGTCACAAGGCAACAGCCAGCAAACAAAGGACAGTGATGGTGATCGTGTCACCCAAGGCCTTGGAACCGTGTGGAGTCTTATCTTAGCACGGCCTCCACTTCGACAAGATTGCTTAGATATTGCTCTTAAGTGTGCCATTCACTCTCAAGATGAAGTCAGGGGAAAGGCAGTTAGATTGGTTACAAAAAAACTCTATGAACTAACATACGCATCAGAAAGAGTTGAGCAGTTTGCCATCGACAGTCTTTTGGCAATTGCTAATAAACATGGTGTGGAGACGGACATTAATTTCACATCCTTGAAAGAATCTTCACCTGAGTTTGAGGCAGGCAGCCAGGAAACTTCGGTTAGTGGCTCCCATATTTCAGATGCTGAACCTTCTGAAAGTACATGCAATAAGACCGATTTGGTTTCACCTAAGCAATCTGCAGTATCTGTATCTGAGGCCAAACGCCATACTTCATTGTTCTTTGCACTTTGCACGAAGAGGCCCATTCTTCTTCAACATCTGTTCAATGTTTATGGAAGGTCTCCAAAAGTTGTCAAGCAGTGTATCCATTGGCATATACC]

[+] EMBL CB627225             [AGCTACTTTAAACAATGAATTGGATAGCGTGGAATTGGAGGTTGATCCATTTTCCCCAGTTTTGAAGGCATCAACGCCAGGAGGATACTACTAATCATGATTTGCCAGTTCTTCCATCTCATCTGGAATTAAGTGACGATGAGAAAATCTTGTTGCACAAATTAGCAATTAGACGGATAATCGATGATTACAAGAAAAACAGCGTTAACACAAGATTTTCCCTCCTTGCTCATTTGATTGCCCAGAGTACTGCTGATGACAATATTATGGATTTGATTCAGAGACACATTATATACCATTATCATGATCAGGGTCATGAACTGGCAATGCATGTGCTGTATCAGCTGCACAGTGTGAGTGTTGCTGATTCACCAGAAAGCACCGCACCTGCTTCTAAAAATTATGAGAACTTCTTTATATCACTTGCAAGGTCCTTGATTCACTCGCTACCTGCTTCAGACAAATCTTTTAGCAAATTTCTGTGTGATGCACCATACTTGCCTGAGTCTATGCTTAAATTACTGGAGGATATTTGTGTGTCACAAGGCAACAGCCAGCAAACAAAGGACAGTGATGGTGATCGTGTCACCCAAGGCCTTGGAACCGTGTGGAGTCTTATCTTAGCACGGCCTCCACTTCGACAAGATTGCTTAGATATTGCTCTTAAGTGTGCCATTCACTCTCAAGATGAAGTCAGGGGAAAGGCAGTTAGATTGGTTACAAAAAAACTCTATGAACTAACATACGCATCAGAAAGAGTTGAGCAGTTTGCCATCGACAGTCTTTTGGCAATTG                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB633463             [                                                                                                                                                                                                                                                                                                                                      ATGCATGTGCTGTATCAGCTGCACAGTGTGAGTGTTGCTGATTCACCAGAAAGCACCGCACCTGCTTCTAAAAATTATGAGAACTTCTTTATATCACTTGCAAGGTCCTTGATTCACTCGCTACCTGCTTCAGACAAATCTTTTAGCAAATTTCTGTGTGATGCACCATACTTGCCTGAGTCTATGCTTAAATTACTGGAGGATATTTGTGTGTCACAAGGCAACAGCCAGCAAACAAAGGACAGTGATGGTGATCGTGTCACCCAAGGCCTTGGAACCGTGTGGAGTCTTATCTTAGCACGGCCTCCACTTCGACAAGATTGCTTAGATATTGCTCTTAAGTGTGCCATTCACTCTCAAGATGAAGTCAGGGGAAAGGCAGTTAGATTGGTTACAAAAAAACTCTATGAACTAACATACGCATCAGAAAGAGTTGAGCAGTTTGCCATCGACAGTCTTTTGGCAATTGCTAATAAACATGGTGTGGAGACGGACATTAATTTCACATCCTTGAAAGAATCTTCACCTGAGTTTGAGGCAGGCAGCCAGGAAACTTCGGTTAGTGGCTCCCATATTTCAGATGCTGAACCTTCTGAAAGTACATGCAATAAGACCGATTTGGTTTCACCTAAGCAATCTGCAGTATCTGTATCTGAGGCCAAACGCCATACTTCATTGTTCTTTGCACTTTGCACGAAGAGGCCCATTCTTCTTCAACATCTGTTCAATGTTTATGGAAGGTCTCCAAAAGTTGTCAAGCAGTGTATCCATTGGCATATACC]




>consensus_5353#0
AGCTACTTTAAACAATGAATTGGATAGCGTGGAATTGGAGGTTGATCCATTTTCCCCAGT
TTTGAAGGCATCAACGCCAGGAGGATACTACTAATCATGATTTGCCAGTTCTTCCATCTC
ATCTGGAATTAAGTGACGATGAGAAAATCTTGTTGCACAAATTAGCAATTAGACGGATAA
TCGATGATTACAAGAAAAACAGCGTTAACACAAGATTTTCCCTCCTTGCTCATTTGATTG
CCCAGAGTACTGCTGATGACAATATTATGGATTTGATTCAGAGACACATTATATACCATT
ATCATGATCAGGGTCATGAACTGGCAATGCATGTGCTGTATCAGCTGCACAGTGTGAGTG
TTGCTGATTCACCAGAAAGCACCGCACCTGCTTCTAAAAATTATGAGAACTTCTTTATAT
CACTTGCAAGGTCCTTGATTCACTCGCTACCTGCTTCAGACAAATCTTTTAGCAAATTTC
TGTGTGATGCACCATACTTGCCTGAGTCTATGCTTAAATTACTGGAGGATATTTGTGTGT
CACAAGGCAACAGCCAGCAAACAAAGGACAGTGATGGTGATCGTGTCACCCAAGGCCTTG
GAACCGTGTGGAGTCTTATCTTAGCACGGCCTCCACTTCGACAAGATTGCTTAGATATTG
CTCTTAAGTGTGCCATTCACTCTCAAGATGAAGTCAGGGGAAAGGCAGTTAGATTGGTTA
CAAAAAAACTCTATGAACTAACATACGCATCAGAAAGAGTTGAGCAGTTTGCCATCGACA
GTCTTTTGGCAATTGCTAATAAACATGGTGTGGAGACGGACATTAATTTCACATCCTTGA
AAGAATCTTCACCTGAGTTTGAGGCAGGCAGCCAGGAAACTTCGGTTAGTGGCTCCCATA
TTTCAGATGCTGAACCTTCTGAAAGTACATGCAATAAGACCGATTTGGTTTCACCTAAGC
AATCTGCAGTATCTGTATCTGAGGCCAAACGCCATACTTCATTGTTCTTTGCACTTTGCA
CGAAGAGGCCCATTCTTCTTCAACATCTGTTCAATGTTTATGGAAGGTCTCCAAAAGTTG
TCAAGCAGTGTATCCATTGGCATATACC

consensusID : consensus_5353#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [AGGCCTTGGAACCGTGTGGAGTCTTATCTTAGCACGGCCTCCACTTCGACAAGATTGCTTAGATATTGCTCTTAAGTGTGCCATTCACTCTCAAGATGAAGTCAGGGGAAAGGCAGTTAGATTGGTCTGTAGGATCATTGCCTCTATGCTTATGTTCTGTTAATTTGCCATTTTTTTATTTAGTGCTGGTTTTGTAATGCTAATCCTTGTATTTTTGGTAGGTTACAAAAAAACTCTATGAACTAACATACGCATCAGAAAGAGTTGAGCAGTTTGCCATCGACAGTCTTTTGGCAATTGCTAATNAAACATGGTGTGGAGACGGACATTAATTTCACATCCTTGAAAGAATCTTCACCTGAGTTTGAGGCAGGCAGCCAGNGAAACTTCGGTTAGTGGCTCCCATATTTCAGATGCTGAACCTTCTGAAAGTACATGCAATAAGACCGA]

[+] EMBL AU066051             [AGGCCTTGGAACCGTGTGGAGTCTTATCTTAGCACGGCCTCCACTTCGACAAGATTGCTTAGATATTGCTCTTAAGTGTGCCATTCACTCTCAAGATGAAGTCAGGGGAAAGGCAGTTAGATTGGTCTGTAGGATCATTGCCTCTATGCTTATGTTCTGTTAATTTGCCATTTTTTTATTTAGTGCTGGTTTTGTAATGCTAATCCTTGTATTTTTGGTAGGTTACAAAAAAACTCTATGAACTAACATACGCATCAGAAAGAGTTGAGCAGTTTGCCATCGACAGTCTTTTGGCAATTGCTAATNAAACATGGTGTGGAGACGGACATTAATTTCACATCCTTGAAAGAATCTTCACCTGAGTTTGAGGCAGGCAGCCAGNGAAACTTCGGTTAGTGGCTCCCATATTTCAGATGCTGAACCTTCTGAAAGTACATGCAATAAGACCGA]




>consensus_5353#1
AGGCCTTGGAACCGTGTGGAGTCTTATCTTAGCACGGCCTCCACTTCGACAAGATTGCTT
AGATATTGCTCTTAAGTGTGCCATTCACTCTCAAGATGAAGTCAGGGGAAAGGCAGTTAG
ATTGGTCTGTAGGATCATTGCCTCTATGCTTATGTTCTGTTAATTTGCCATTTTTTTATT
TAGTGCTGGTTTTGTAATGCTAATCCTTGTATTTTTGGTAGGTTACAAAAAAACTCTATG
AACTAACATACGCATCAGAAAGAGTTGAGCAGTTTGCCATCGACAGTCTTTTGGCAATTG
CTAATNAAACATGGTGTGGAGACGGACATTAATTTCACATCCTTGAAAGAATCTTCACCT
GAGTTTGAGGCAGGCAGCCAGNGAAACTTCGGTTAGTGGCTCCCATATTTCAGATGCTGA
ACCTTCTGAAAGTACATGCAATAAGACCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5353#0      AGCTACTTTAAACAATGAATTGGATAGCGTGGAATTGGAGGTTGATCCATTTTCCCCAGT 60
consensus_5353#1      ------------------------------------------------------------
                                                                                  

consensus_5353#0      TTTGAAGGCATCAACGCCAGGAGGATACTACTAATCATGATTTGCCAGTTCTTCCATCTC 120
consensus_5353#1      ------------------------------------------------------------
                                                                                  

consensus_5353#0      ATCTGGAATTAAGTGACGATGAGAAAATCTTGTTGCACAAATTAGCAATTAGACGGATAA 180
consensus_5353#1      ------------------------------------------------------------
                                                                                  

consensus_5353#0      TCGATGATTACAAGAAAAACAGCGTTAACACAAGATTTTCCCTCCTTGCTCATTTGATTG 240
consensus_5353#1      ------------------------------------------------------------
                                                                                  

consensus_5353#0      CCCAGAGTACTGCTGATGACAATATTATGGATTTGATTCAGAGACACATTATATACCATT 300
consensus_5353#1      ------------------------------------------------------------
                                                                                  

consensus_5353#0      ATCATGATCAGGGTCATGAACTGGCAATGCATGTGCTGTATCAGCTGCACAGTGTGAGTG 360
consensus_5353#1      ------------------------------------------------------------
                                                                                  

consensus_5353#0      TTGCTGATTCACCAGAAAGCACCGCACCTGCTTCTAAAAATTATGAGAACTTCTTTATAT 420
consensus_5353#1      ------------------------------------------------------------
                                                                                  

consensus_5353#0      CACTTGCAAGGTCCTTGATTCACTCGCTACCTGCTTCAGACAAATCTTTTAGCAAATTTC 480
consensus_5353#1      -----------------------------------------------------AGGCCTT 7
                                                                           *    * 

consensus_5353#0      TGTGTGATGCACCATACTTGCCTGAGTCTATGCTTAAATTACTGGAGGATATTTGTGTGT 540
consensus_5353#1      GGAACCGTGTGGAGT-CTTATCTTAGCACGGCCTCCACTTCGACAAGATTGCTTAGATAT 66
                       *     **     * ***  ** **      **  * **     **  *  **   * *

consensus_5353#0      CACAAGGCAACAGCCAGCAAACAAAGGACAGTGATGGTGATCGTGTCACCCAAGGCCTTG 600
consensus_5353#1      TGC-------TCTTAAGTGTGCCATTCACTCTCAAGATGAAGTCAGGGGAAAGGCAGTTA 119
                        *            **    * *   **  * * * ***           * *   ** 

consensus_5353#0      GAACCGTGTGGAGTCTTATCTTAGCACGGCCTCCACTTCGACAAGATTGCTTAGATATTG 660
consensus_5353#1      GATTGGTCTGTAGGATCATTGCCTCTATGCTTATGTTCTGTTAAT-TTGCC---ATTTTT 175
                      **   ** ** **  * **     *   ** *    *  *  **  ****    ** ** 

consensus_5353#0      CTCTTAAGTGTGCCATTCACTCTCAAGATGAAGTCAGGGGAAAGGCAGTTAGATTGGTTA 720
consensus_5353#1      TTATTTAGTGC-----TGGTTTTGTAATGCTAATCCTTGTATT-----TTTGGTAGGTTA 225
                       * ** ****      *   * *  *     * **   * *       ** * * *****

consensus_5353#0      CAAAAAAACTCTATGAACTAACATACGCATCAGAAAGAGTTGAGCAGTTTGCCATCGACA 780
consensus_5353#1      CAAAAAAACTCTATGAACTAACATACGCATCAGAAAGAGTTGAGCAGTTTGCCATCGACA 285
                      ************************************************************

consensus_5353#0      GTCTTTTGGCAATTGCTAATAAA-CATGGTGTGGAGACGGACATTAATTTCACATCCTTG 839
consensus_5353#1      GTCTTTTGGCAATTGCTAATNAAACATGGTGTGGAGACGGACATTAATTTCACATCCTTG 345
                      ******************** ** ************************************

consensus_5353#0      AAAGAATCTTCACCTGAGTTTGAGGCAGGCAGCCAGG-AAACTTCGGTTAGTGGCTCCCA 898
consensus_5353#1      AAAGAATCTTCACCTGAGTTTGAGGCAGGCAGCCAGNGAAACTTCGGTTAGTGGCTCCCA 405
                      ************************************  **********************

consensus_5353#0      TATTTCAGATGCTGAACCTTCTGAAAGTACATGCAATAAGACCGATTTGGTTTCACCTAA 958
consensus_5353#1      TATTTCAGATGCTGAACCTTCTGAAAGTACATGCAATAAGACCGA--------------- 450
                      *********************************************               

consensus_5353#0      GCAATCTGCAGTATCTGTATCTGAGGCCAAACGCCATACTTCATTGTTCTTTGCACTTTG 1018
consensus_5353#1      ------------------------------------------------------------
                                                                                  

consensus_5353#0      CACGAAGAGGCCCATTCTTCTTCAACATCTGTTCAATGTTTATGGAAGGTCTCCAAAAGT 1078
consensus_5353#1      ------------------------------------------------------------
                                                                                  

consensus_5353#0      TGTCAAGCAGTGTATCCATTGGCATATACC 1108
consensus_5353#1      ------------------------------