cluster # 5355

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Oryza sativa
cluster # 5355 cluster # 5355 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5355#0 length = 756 sequences # 2

consensus_5355#1 length = 628 sequences # 1

consensusID : consensus_5355#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 756
fasta sequence

                              [TCTCTCTCTCTCTCTCTCTCTCCTCCTTTCCCCCTCCTTCCCCTTCCTTCCTTCCTTCCTCCCTCCGCCCTGCTCCTCTCTCGGGATTCGCCTCCGTTCATCCGCCCGTGCGGGAGAGCCTAGCGGAGCAGAAGCAGGCGCGCGCGGCGGCAGCGGCGGCGGCGAGGAGTAGGAGGAGGAGGAAGGCGAGGACGAGGGCGAGGACGAGGACGAGGAGGGAGGATATGGCGGCGGCTAGGGTTTCTATCCCGGCGGCGGTGCGGCGGACGATCCATAACATCAAGGAGATCGCGGGCGGCCACACCGACGAGGAGGTCTACGCCGTGCTCCGCGAATGCAACATGGATCCCAACGAGACCACCGATAGGCTTCTCAACCAAGGTACATTCCATGAGGTCAGAAGAAAGAGAGACACGAAAAAGGAGAGTGCCAAAGAATCTGCCGATGCTCGATGGAGGCCTGGGATGCAGGGGCGAGGTGGAAAAGGTGGATGGGGAAACTCTTCACGCCAGCTATCCAACTCCTTTGGTATGCATGGCATCTGTCTTCAAAAATGGAAGTGCTCTATCAAACCTATACTACATGTGGCATCCGTGTTGTGATACACTATGAGCAGCTCATGTTGCATTCTTGTAATCTTGTTTAATTTAAAGAGTGGTTTCTCTTTGATATCTGATGGATTTTGTAATATGTAGAACTGCCTGCTCATTATATGAATGTTACTGCCATTTGATTTTCTCCAAAAAAAAAAAAAAA]

[+] EMBL CB640953             [TCTCTCTCTCTCTCTCTCTCTCCTCCTTTCCCCCTCCTTCCCCTTCCTTCCTTCCTTCCTCCCTCCGCCCTGCTCCTCTCTCGGGATTCGCCTCCGTTCATCCGCCCGTGCGGGAGAGCCTAGCGGAGCAGAAGCAGGCGCGCGCGGCGGCAGCGGCGGCGGCGAGGAGTAGGAGGAGGAGGAAGGCGAGGACGAGGGCGAGGACGAGGACGAGGAGGGAGGATATGGCGGCGGCTAGGGTTTCTATCCCGGCGGCGGTGCGGCGGACGATCCATAACATCAAGGAGATCGCGGGCGGCCACACCGACGAGGAGGTCTACGCCGTGCTCCGCGAATGCAACATGGATCCCAACGAGACCACCGATAGGCTTCTCAACCAAGGTACATTCCATGAGGTCAGAAGAAAGAGAGACACGAAAAAGGAGAGTGCCAAAGAATC                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CA759498             [                                                                                                                                                                                                           ACGA GACAAGGGGGGAGGATATGGCGGCGGCTAGGGTTTCGATCCCGGNGGCGGTGCGGCGGACGATCCAGAACATCAAGGAGATCGCGGGCGGCCACACCGACGAGGAGGTCTACGCCGTGCTCCGCGAATGCAACATGGATCCCAACGAGACCACCGATAGGCTTCTCAACCAAGGTACATTCCATGAGGTCAGAAGAAAGAGAGCCAAGAAAAAGGAGAGTGCCAAAGAATCTGCCGATGCTCGATGGAGGCCTGGGATGCAGGGGCGAGGTGGAAAAGGTGGATGGGGAAACTCTTCACGCCAGCTATCCAACTCCTTTGGTATGCATGGCATCTGTCTTCAAAAATGGAAGTGCTCTATCAAACCTATACTACATGTGGCATCCGTGTTGTGATACACTATGAGCAGCTCATGTTGCATTCTTGTAATCTTGTTTAATTTAAAGAGTGGTTTCTCTTTGATATCTGATGGATTTTGTAATATGTAGAACTGCCTGCTCATTATATGAATGTTACTGCCATTTGATTTTCTCCAAAAAAAAAAAAAAA]




>consensus_5355#0
TCTCTCTCTCTCTCTCTCTCTCCTCCTTTCCCCCTCCTTCCCCTTCCTTCCTTCCTTCCT
CCCTCCGCCCTGCTCCTCTCTCGGGATTCGCCTCCGTTCATCCGCCCGTGCGGGAGAGCC
TAGCGGAGCAGAAGCAGGCGCGCGCGGCGGCAGCGGCGGCGGCGAGGAGTAGGAGGAGGA
GGAAGGCGAGGACGAGGGCGAGGACGAGGACGAGGAGGGAGGATATGGCGGCGGCTAGGG
TTTCTATCCCGGCGGCGGTGCGGCGGACGATCCATAACATCAAGGAGATCGCGGGCGGCC
ACACCGACGAGGAGGTCTACGCCGTGCTCCGCGAATGCAACATGGATCCCAACGAGACCA
CCGATAGGCTTCTCAACCAAGGTACATTCCATGAGGTCAGAAGAAAGAGAGACACGAAAA
AGGAGAGTGCCAAAGAATCTGCCGATGCTCGATGGAGGCCTGGGATGCAGGGGCGAGGTG
GAAAAGGTGGATGGGGAAACTCTTCACGCCAGCTATCCAACTCCTTTGGTATGCATGGCA
TCTGTCTTCAAAAATGGAAGTGCTCTATCAAACCTATACTACATGTGGCATCCGTGTTGT
GATACACTATGAGCAGCTCATGTTGCATTCTTGTAATCTTGTTTAATTTAAAGAGTGGTT
TCTCTTTGATATCTGATGGATTTTGTAATATGTAGAACTGCCTGCTCATTATATGAATGT
TACTGCCATTTGATTTTCTCCAAAAAAAAAAAAAAA

consensusID : consensus_5355#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [CCCCCACCTCCGCTTCCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTTTCCCCCTCCTTCCCCTTCCTTCCTTCCTTCCTCCCTCCGCCCTGCTCCTCTCTCGGGATTCGCCTCCGTTCATCCGCCCGTGCGGGAGAGCCTAGCGGAGCAGAAGCAGGCGCGCGCGGCGGCAGCGGCGGCGGCGAGGAGTAGGAGGAGGAGGAAGGCGAGGACGAGGGCGAGGACGAGGACGAGGAGGGAGGATATGGCGGCGGCTAGGGTTTCGATCCCGGCGGCGGTGCGGCGGACGATCCAGAACATCAAGGAGATCGCGGGCGGCCACACCGACGAGGAGGTCTACGCCGTGCTCCGCGAATGCAACATGGATCCCAACGAGACCACCGATAGGCTTCTCAACCAAGTTGCACTGTACGGCTGGTGGTTTCACTGTAGGCGCAGTGGTTTCTATAGGATGGATGCTTCCACCTTTGCAACATGGAACTTCTAGTGCTACCTGTAGTGAAAATTTGAAGTTGATGCACAAATGTTTGTGTGGAAATTGAAGCCGAATGGCCTACCAAAATAAAGATGCCATACATGTAAATCAAACTAAACTTGGATAGAATCATACTGTTCTGGAG]

[+] EMBL AK105353             [CCCCCACCTCCGCTTCCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTTTCCCCCTCCTTCCCCTTCCTTCCTTCCTTCCTCCCTCCGCCCTGCTCCTCTCTCGGGATTCGCCTCCGTTCATCCGCCCGTGCGGGAGAGCCTAGCGGAGCAGAAGCAGGCGCGCGCGGCGGCAGCGGCGGCGGCGAGGAGTAGGAGGAGGAGGAAGGCGAGGACGAGGGCGAGGACGAGGACGAGGAGGGAGGATATGGCGGCGGCTAGGGTTTCGATCCCGGCGGCGGTGCGGCGGACGATCCAGAACATCAAGGAGATCGCGGGCGGCCACACCGACGAGGAGGTCTACGCCGTGCTCCGCGAATGCAACATGGATCCCAACGAGACCACCGATAGGCTTCTCAACCAAGTTGCACTGTACGGCTGGTGGTTTCACTGTAGGCGCAGTGGTTTCTATAGGATGGATGCTTCCACCTTTGCAACATGGAACTTCTAGTGCTACCTGTAGTGAAAATTTGAAGTTGATGCACAAATGTTTGTGTGGAAATTGAAGCCGAATGGCCTACCAAAATAAAGATGCCATACATGTAAATCAAACTAAACTTGGATAGAATCATACTGTTCTGGAG]




>consensus_5355#1
CCCCCACCTCCGCTTCCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTTTCCC
CCTCCTTCCCCTTCCTTCCTTCCTTCCTCCCTCCGCCCTGCTCCTCTCTCGGGATTCGCC
TCCGTTCATCCGCCCGTGCGGGAGAGCCTAGCGGAGCAGAAGCAGGCGCGCGCGGCGGCA
GCGGCGGCGGCGAGGAGTAGGAGGAGGAGGAAGGCGAGGACGAGGGCGAGGACGAGGACG
AGGAGGGAGGATATGGCGGCGGCTAGGGTTTCGATCCCGGCGGCGGTGCGGCGGACGATC
CAGAACATCAAGGAGATCGCGGGCGGCCACACCGACGAGGAGGTCTACGCCGTGCTCCGC
GAATGCAACATGGATCCCAACGAGACCACCGATAGGCTTCTCAACCAAGTTGCACTGTAC
GGCTGGTGGTTTCACTGTAGGCGCAGTGGTTTCTATAGGATGGATGCTTCCACCTTTGCA
ACATGGAACTTCTAGTGCTACCTGTAGTGAAAATTTGAAGTTGATGCACAAATGTTTGTG
TGGAAATTGAAGCCGAATGGCCTACCAAAATAAAGATGCCATACATGTAAATCAAACTAA
ACTTGGATAGAATCATACTGTTCTGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5355#0      ----------------------------TCTCTCTCTCTCTCTCTCTCTCCTCCTTTCCC 32
consensus_5355#1      CCCCCACCTCCGCTTCCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTTTCCC 60
                                                  ********************************

consensus_5355#0      CCTCCTTCCCCTTCCTTCCTTCCTTCCTCCCTCCGCCCTGCTCCTCTCTCGGGATTCGCC 92
consensus_5355#1      CCTCCTTCCCCTTCCTTCCTTCCTTCCTCCCTCCGCCCTGCTCCTCTCTCGGGATTCGCC 120
                      ************************************************************

consensus_5355#0      TCCGTTCATCCGCCCGTGCGGGAGAGCCTAGCGGAGCAGAAGCAGGCGCGCGCGGCGGCA 152
consensus_5355#1      TCCGTTCATCCGCCCGTGCGGGAGAGCCTAGCGGAGCAGAAGCAGGCGCGCGCGGCGGCA 180
                      ************************************************************

consensus_5355#0      GCGGCGGCGGCGAGGAGTAGGAGGAGGAGGAAGGCGAGGACGAGGGCGAGGACGAGGACG 212
consensus_5355#1      GCGGCGGCGGCGAGGAGTAGGAGGAGGAGGAAGGCGAGGACGAGGGCGAGGACGAGGACG 240
                      ************************************************************

consensus_5355#0      AGGAGGGAGGATATGGCGGCGGCTAGGGTTTCTATCCCGGCGGCGGTGCGGCGGACGATC 272
consensus_5355#1      AGGAGGGAGGATATGGCGGCGGCTAGGGTTTCGATCCCGGCGGCGGTGCGGCGGACGATC 300
                      ******************************** ***************************

consensus_5355#0      CATAACATCAAGGAGATCGCGGGCGGCCACACCGACGAGGAGGTCTACGCCGTGCTCCGC 332
consensus_5355#1      CAGAACATCAAGGAGATCGCGGGCGGCCACACCGACGAGGAGGTCTACGCCGTGCTCCGC 360
                      ** *********************************************************

consensus_5355#0      GAATGCAACATGGATCCCAACGAGACCACCGATAGGCTTCTCAACCAAGGTACATTCCAT 392
consensus_5355#1      GAATGCAACATGGATCCCAACGAGACCACCGATAGGCTTCTCAACCAAGTTGCACTGTAC 420
                      ************************************************* * ** *  * 

consensus_5355#0      GAG-GTCAGAAGAAAGAGAGACACGAAAAAGG--AGAGTGCCAAAGAATCTGCCGATGCT 449
consensus_5355#1      GGCTGGTGGTTTCACTGTAGGCGCAGTGGTTTCTATAGGATGGATGCTTCCACCTTTGCA 480
                      *   *   *    *    ** * *          * **     * *  **  **  *** 

consensus_5355#0      CGATGGAGGCCTGGGATGCAGGGGCGAGGTGGAAA----AGGTGGATGGGGAAACTCTTC 505
consensus_5355#1      ACATGGAA-CTTCTAGTGCTACC-TGTAGTGAAAATTTGAAGTTGATGCACAAA-TGTTT 537
                        *****  * *    ***      *  *** ***    * ** ****   *** * ** 

consensus_5355#0      ACGCCAGCTATCCAACTCCTTTGGTATGCATGGCATCTGTCTTCAAAAATGGAAGTGCTC 565
consensus_5355#1      GTGT-GGAAATTGAAGCCGAATGGCCTACCAAAATAAAGATGCCATACATGTAA------ 590
                        *   *  **  **  *   ***  * *         *    ** * *** **      

consensus_5355#0      TATCAAACCTATACTACATGTGGCATCCGTGTTGTGATACACTATGAGCAGCTCATGTTG 625
consensus_5355#1      -ATCAAACTAAACTTGGATAGAATCATACTGTTCTGGAG--------------------- 628
                       *******  *   *  **          **** **                        

consensus_5355#0      CATTCTTGTAATCTTGTTTAATTTAAAGAGTGGTTTCTCTTTGATATCTGATGGATTTTG 685
consensus_5355#1      ------------------------------------------------------------
                                                                                  

consensus_5355#0      TAATATGTAGAACTGCCTGCTCATTATATGAATGTTACTGCCATTTGATTTTCTCCAAAA 745
consensus_5355#1      ------------------------------------------------------------
                                                                                  

consensus_5355#0      AAAAAAAAAAA 756
consensus_5355#1      -----------