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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1367 fasta sequence
[TCCGCCGATCCCCTCCGATCTCGAATTCTCGACCTCCCTTCCTCCTTCGCCGCCGCCGCCGCCGCTCGTCGCCGGCCACCTCCACCGCCGCCATGAACTACATCGTCGGAGCGTTCAAGCCGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCAAGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCGGGGAGGTGTCGGTAGTGCCGGTTCCGGGCAAGAGGATCGAGCACTTGGGTGTCAAGATTGAGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCATTGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGTTTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGATATATTTTGAAGGTTACGATCAGCCGAAACATTATGGGCATGGGCAGCATTGTGGAGTTCCGTGAGTTCTGTGTAAGAAATTACTCTCCTGCCCCCACAATCAACAACAGTATCAAGATGGAAGTTGGAATTGAGGATTGCTTACATATTGAGTTCGAATACAGCAAAAGCAAGTACCATCTCAAGGATGTGATTATTGGGAAGATCTACTTTCTTCTTGTCAGAATAAAGATAAAAAACATGGAACTAGAAGTACGTCGTAGGGAATCAACAGGAGCAGGCTCTAGTGCATATGTTGAGACTGAAACTCTTGCAAAGTTTGAGTTGATGGATGGTGCTCCTGTCAGAGGAGAATCCATCCCGGTGAGGCTATTCTTGACGCCTTACGAGCTGACCCCTTCGTATCGGAACATAAACAACAAGTTCAGCGTCAAGTACTACCTGAATCTGGTCCTTGTTGATGAGGAAGATAGGAGGTACTTCAAGCAGCAAGAGATCACCATGTATCGCCTTCTAGAAACCCCCCAGGCTTCCTAGATTCCAAACTGGAGCAGCAAGATGTTTTTCGATTCTCAGGTTTTGTACAAGCTAGCATCGAGGTTAGGGCAATGGCGTACTTACATGTATATAAACTCCAGAAGAGCTCGGCAGTTCACTAGTGCTGCTCTCCAAATCACATTTCTTTGTTTCTGTATCTTCTTGTCCTCTGTGTGCTTATGGTAGACCCTTTGATTCATGTGGAGTATATGTGCATTACCTCCCCCTGTTTATTTCTGTTTCTTGAAAGTAATCTGTCCGAAGACCTTATGTGTATTATCTCACAAGGATCTTTGTTAATTCACTTGATTGAAGTTTTGCAGTGATGATTGAAGTTTTGCAGTGATGCATAAC]
[+] EMBL AK073408 [TCCGCCGATCCCCTCCGATCTCGAATTCTCGACCTCCCTTCCTCCTTCGCCGCCGCCGCCGCCGCTCGTCGCCGGCCACCTCCACCGCCGCCATGAACTACATCGTCGGAGCGTTCAAGCCGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCAAGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCGGGGAGGTGTCGGTAGTGCCGGTTCCGGGCAAGAGGATCGAGCACTTGGGTGTCAAGATTGAGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCATTGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGTTTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGATATATTTTGAAGGTTACGATCAGCCGAAACATTATGGGCATGGGCAGCATTGTGGAGTTCCGTGAGTTCTGTGTAAGAAATTACTCTCCTGCCCCCACAATCAACAACAGTATCAAGATGGAAGTTGGAATTGAGGATTGCTTACATATTGAGTTCGAATACAGCAAAAGCAAGTACCATCTCAAGGATGTGATTATTGGGAAGATCTACTTTCTTCTTGTCAGAATAAAGATAAAAAACATGGAACTAGAAGTACGTCGTAGGGAATCAACAGGAGCAGGCTCTAGTGCATATGTTGAGACTGAAACTCTTGCAAAGTTTGAGTTGATGGATGGTGCTCCTGTCAGAGGAGAATCCATCCCGGTGAGGCTATTCTTGACGCCTTACGAGCTGACCCCTTCGTATCGGAACATAAACAACAAGTTCAGCGTCAAGTACTACCTGAATCTGGTCCTTGTTGATGAGGAAGATAGGAGGTACTTCAAGCAGCAAGAGATCACCATGTATCGCCTTCTAGAAACCCCCCAGGCTTCCTAGATTCCAAACTGGAGCAGCAAGATGTTTTTCGATTCTCAGGTTTTGTACAAGCTAGCATCGAGGTTAGGGCAATGGCGTACTTACATGTATATAAACTCCAGAAGAGCTCGGCAGTTCACTAGTGCTGCTCTCCAAATCACATTTCTTTGTTTCTGTATCTTCTTGTCCTCTGTGTGCTTATGGTAGACCCTTTGATTCATGTGGAGTATATGTGCATTACCTCCCCCTGTTTATTTCTGTTTCTTGAAAGTAATCTGTCCGAAGACCTTATGTGTATTATCTCACAAGGATCTTTGTTAATTCACTTGATTGAAGTTTTGCAGTGATGATTGAAGTTTTGCAGTGATGCATAAC]
[+] EMBL CA998921 [ CTCTCCTGCCCCCGCAATCAACAACAGTATCAAGATGGAAGTTGGAATTGAGGATTGCTTACATATTGAGTTCGAATACAGCAAAAGCAAGTACCATCTCAAGGATGTGATTATTGGGAAGATCTACTTTCTTCTTGTCAGAATAAAGATAAAAAACATGGAACTAGAAGTACGTCGTAGGGAATCAACAGGAGCAGGCTCTAGTGCATATGTTGAGACTGAAACTCTTGCAAAGTTTGAGTTGATGGATGGTGCTCCTGTCAGAGGAGAATCCATCCCGGTGAGGCTATTCTTGACGCCTTACGAGCTGACCCCTTCGTATCGGAACATAAACAACAAGTTCAGCGTCAAGTACTACCTGAATCTGGTCCTTGTTGATGAGGAAGATAGGAGGTACTTCAAGCAGCAAGAGATCACCATGTATCGCCTTCTAGAAACCCCCCAGGCTTCCTAGATTCCAAACTGGAGCAGCAAGATGTTTTTCGATTCTCAGGTTTTGTACAAGCTAGCATCGAGGTTAGGGCAATGGCGTACTTACATGTATATAAACTCCAGAAGAGCTCGGCAGTTCACTAGTGCTGCTCTCCCAATCACATTTCTTTGTTTCTGTATCTTCTTGTCCTCTGTGTGCTTATGGTAGACCCTTTGATTCATGTGGAGTATATGTGCATTACCTCCCCC ]
consensusID : consensus_5358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence
[CAAGCCGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCAAGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCGGGGAGGTGTCGGTAGTGCCGGTTCCGGGCTTTTGTATCGAGCACTTGGGTGTCAAGATTGAGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCATTGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGTTTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGGTATGCAAATGGTATGTTTTAAAGTTCCTTTATTAATTTTTAGGGAATTTTAACATTGACCAGTGCTGTGTCTCTATAAGTCAAGGACGCATGGCTCACTCTGCAGTTGTATCAGAGATGATTTCTTCTGAATGATCTGTCTGTGTAATAGTATACAACAGTGTAATATAAAGAATATCCCATTTGATCTACAATATTGACTTAACTGAAAATAATT]
[+] EMBL CF303879 [CAAGCCGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCAAGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCGGGGAGGTGTCGGTAGTGCCGGTTCCGGGCTTTTGTATCGAGCACTTGGGTGTCAAGATTGAGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCATTGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGTTTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGGTATGCAAATGGTATGTTTTAAAGTTCCTTTATTAATTTTTAGGGAATTTTAACATTGACCAGTGCTGTGTCTCTATAAGTCAAGGACGCATGGCTCACTCTGCAGTTGTATCAGAGATGATTTCTTCTGAATGATCTGTCTGTGTAATAGTATACAACAGTGTAATATAAAGAATATCCCATTTGATCTACAATATTGACTTAACTGAAAATAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5358#0 TCCGCCGATCCCCTCCGATCTCGAATTCTCGACCTCCCTTCCTCCTTCGCCGCCGCCGCC 60
consensus_5358#1 ------------------------------------------------------------
consensus_5358#0 GCCGCTCGTCGCCGGCCACCTCCACCGCCGCCATGAACTACATCGTCGGAGCGTTCAAGC 120
consensus_5358#1 -------------------------------------------------------CAAGC 5
*****
consensus_5358#0 CGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCA 180
consensus_5358#1 CGCCCTGCGACATCTCCATCGCCTTCTCCGACGCCAGGTCGCGGAAGCAGATCGCGGTCA 65
************************************************************
consensus_5358#0 AGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCG 240
consensus_5358#1 AGAATGACAATGGGAGGACGGTGATGGTGCCGGTCTTCCAGAGCCTGGAGACCATATCCG 125
************************************************************
consensus_5358#0 GGGAGGTGTCGGTAGTGCCGGTTCCGGGCAAGAGGATCGAGCACTTGGGTGTCAAGATTG 300
consensus_5358#1 GGGAGGTGTCGGTAGTGCCGGTTCCGGGCTTTTGTATCGAGCACTTGGGTGTCAAGATTG 185
***************************** * *************************
consensus_5358#0 AGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCAT 360
consensus_5358#1 AGTTACTGGGTCAGATAGAGCTTTATTTGGAGCGAGGCAAATTCTATGACTTCACTTCAT 245
************************************************************
consensus_5358#0 TGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGT 420
consensus_5358#1 TGGTGCGTGAGCTAGATATTCCTGGTGAAATTTACGAGAAGAAAACATATCCATTCGAGT 305
************************************************************
consensus_5358#0 TTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGATATA 480
consensus_5358#1 TTTCCACTGTTGAAATGCCTTATGAATCTTACAATGGAACAAATGTCAGATTAAGGTATG 365
******************************************************* ***
consensus_5358#0 TTTTGAAGGTTACGATCAGCCGAAACATTATGGGCATGGGCAGCATTGTGGAGTTCCGTG 540
consensus_5358#1 C---AAATGGTATGTTTTAAAGTTCCTTTATTAATTTTTAGGGAATTTTAACATTG-ACC 421
** * ** * * * * **** * * *** * **
consensus_5358#0 AGTTCTGTGTA---AGAAATTACTCTCCTGCCCCCACAATCAACAACAGTATCAAGATGG 597
consensus_5358#1 AGTGCTGTGTCTCTATAAGTCAAGGACGCATGGCT-CACTCTGCAGTTGTATCAGAGATG 480
*** ****** * ** * * * * ** ** ** ****** *
consensus_5358#0 AAGTTGGAATTGAGGATTGCTTACATATTGAGTTCGAATACAGCAAAAGCAAGTACCATC 657
consensus_5358#1 ATTTC----TTCTGAATGATCTGTCTGTGTAATA-GTATACAACA-------GTGTAATA 528
* * ** * ** * * * * * * ***** ** ** **
consensus_5358#0 TCAAGGATGTGATTATTGGGAAGATCTACTTTCTTCTTGTCAGAATAAAGATAAAAAACA 717
consensus_5358#1 TAAAGAATATCCCATTTG-----ATCTACAATATTG--ACTTAACTGAAAATAATT---- 577
* *** ** * *** ****** * ** * * ** ****
consensus_5358#0 TGGAACTAGAAGTACGTCGTAGGGAATCAACAGGAGCAGGCTCTAGTGCATATGTTGAGA 777
consensus_5358#1 ------------------------------------------------------------
consensus_5358#0 CTGAAACTCTTGCAAAGTTTGAGTTGATGGATGGTGCTCCTGTCAGAGGAGAATCCATCC 837
consensus_5358#1 ------------------------------------------------------------
consensus_5358#0 CGGTGAGGCTATTCTTGACGCCTTACGAGCTGACCCCTTCGTATCGGAACATAAACAACA 897
consensus_5358#1 ------------------------------------------------------------
consensus_5358#0 AGTTCAGCGTCAAGTACTACCTGAATCTGGTCCTTGTTGATGAGGAAGATAGGAGGTACT 957
consensus_5358#1 ------------------------------------------------------------
consensus_5358#0 TCAAGCAGCAAGAGATCACCATGTATCGCCTTCTAGAAACCCCCCAGGCTTCCTAGATTC 1017
consensus_5358#1 ------------------------------------------------------------
consensus_5358#0 CAAACTGGAGCAGCAAGATGTTTTTCGATTCTCAGGTTTTGTACAAGCTAGCATCGAGGT 1077
consensus_5358#1 ------------------------------------------------------------
consensus_5358#0 TAGGGCAATGGCGTACTTACATGTATATAAACTCCAGAAGAGCTCGGCAGTTCACTAGTG 1137
consensus_5358#1 ------------------------------------------------------------
consensus_5358#0 CTGCTCTCCAAATCACATTTCTTTGTTTCTGTATCTTCTTGTCCTCTGTGTGCTTATGGT 1197
consensus_5358#1 ------------------------------------------------------------
consensus_5358#0 AGACCCTTTGATTCATGTGGAGTATATGTGCATTACCTCCCCCTGTTTATTTCTGTTTCT 1257
consensus_5358#1 ------------------------------------------------------------
consensus_5358#0 TGAAAGTAATCTGTCCGAAGACCTTATGTGTATTATCTCACAAGGATCTTTGTTAATTCA 1317
consensus_5358#1 ------------------------------------------------------------
consensus_5358#0 CTTGATTGAAGTTTTGCAGTGATGATTGAAGTTTTGCAGTGATGCATAAC 1367
consensus_5358#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||