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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1543 fasta sequence
[AACCATCTTCACCTAAACCCGTCCACACGCCGGGTGGCCGCCAGTTCAGCGAGTGACGACGACGACCCCCCACGCGCGGCGGCCGCGCCCATCTCCGTCGCCTCCCCGCCGGCCATGTCGGTGCCGCCCGCCAGCCACCGCCAGGTGTCCCTGAGGGGATCGAGCGCGAGGGAGATCACCCGCGACGCGCTGCTGCAGAAGGTCTCCGAGGAGCGCCAGCTCCGCAGCCACCTCCGCCGCGCCGCCGCCGCGGCGCTCTCCATCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACCATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAAAATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTTTACCGACTTCCATCTTGACCTTTTTGTACTTTATTTTCTCCTCCTTAATGAAATGACACGCAGCTCTCCTGTGTAGTTTGAAAAAAAATGTTTTACTTTACCCATTCCACTAGTTGTGGTTAACTCCTATAAAAATTTATTTATGTAATACTTCCTTTTGCTGTAAGGATTATAATCCTTTATATTATTCAATCCTTGTATGGCGATGACCTAATTGTTAGTTCTAGAATGGAATTATGTACTTAACAGAAAAGAAATTGCAGTCGACGTGAGATAAGCAGATACTCCCTCCGTCCCTAAATATAAGGGATTTTGGTTGGATGTGATGTATCCTAGTACTACGAATCTGGACAGAGACTTTAATATATATCATATATTTAGTACTAGGATACATCATATCCAACCAAAATTCCCTAAATTTAGGGACGGAGGTAGTATTTGTTTTGATATATATATATATTAGTACTGTTTGGTTGAGCAGTGCAATATGGAAGGAATATTACAGTAACTTTTTTCTTGAGGCTCTTGATCCACTGAGCTGGCACAAATGGGTAGTCTCTTCTCGGTGAGATTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGTGGAATGTAGCCTCTAGATATTACTGTTTCAAGAAAAAAGAAGTTCTTTGAATTTGAATGTAAAGTGCATGCTATGCTTTGATAGACAAGAAGTATGAAGTGGGTCTACGATATGTAACCTTGTTTAATAATGGACGGATGCATGCTAAGCTACAGAGCGAAGCTCCCAACCAGCTGGCCTCCATGTTTAAAGATAATACAAATATTACCACATAACTAGTTTAGAATGCATAGGTCCATAACTGTCCTTCAATTATCATTTGGTAGATGAGGTTAAACACAAAAAGCATGAACTATCTTGGAGAGCTAGCTTTCCTTTAACCATTACAGTAACAATAAGAACAGCCTTTAGTCCCAAGCAATTTGGGGTAGGCTAGACAGGAAATCCAAGTCAAACCACAT]
[+] EMBL AK107672 [AACCATCTTCACCTAAACCCGTCCACACGCCGGGTGGCCGCCAGTTCAGCGAGTGACGACGACGACCCCCCACGCGCGGCGGCCGCGCCCATCTCCGTCGCCTCCCCGCCGGCCATGTCGGTGCCGCCCGCCAGCCACCGCCAGGTGTCCCTGAGGGGATCGAGCGCGAGGGAGATCACCCGCGACGCGCTGCTGCAGAAGGTCTCCGAGGAGCGCCAGCTCCGCAGCCACCTCCGCCGCGCCGCCGCCGCGGCGCTCTCCATCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACCATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAAAATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTTTACCGACTTCCATCTTGACCTTTTTGTACTTTATTTTCTCCTCCTTAATGAAATGACACGCAGCTCTCCTGTGTAGTTTGAAAAAAAATGTTTTACTTTACCCATTCCACTAGTTGTGGTTAACTCCTATAAAAATTTATTTATGTAATACTTCCTTTTGCTGTAAGGATTATAATCCTTTATATTATTCAATCCTTGTATGGCGATGACCTAATTGTTAGTTCTAGAATGGAATTATGTACTTAACAGAAAAGAAATTGCAGTCGACGTGAGATAAGCAGATACTCCCTCCGTCCCTAAATATAAGGGATTTTGGTTGGATGTGATGTATCCTAGTACTACGAATCTGGACAGAGACTTTAATATATATCATATATTTAGTACTAGGATACATCATATCCAACCAAAATTCCCTAAATTTAGGGACGGAGGTAGTATTTGTTTTGATATATATATATATTAGTACTGTTTGGTTGAGCAGTGCAATATGGAAGGAATATTACAGTAACTTTTTTCTTGAGGCTCTTGATCCACTGAGCTGGCACAAATGGGTAGTCTCTTCTCGGTGAGATTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGTGGAATGTAGCCTCTAGATATTACTGTTTCAAGAAAAAAGAAGTTCTTTGAATTTGAATGTAAAGTGCATGCTATGCTTTGATAGACAAGAAGTATGAAGTGGGTCTACGATATGTAACCTTGTTTAATAATGGACGGATGCATGCTAAGCTACAGAGCGAAGCTCCCAACCAGCTGGCCTCCATGTTTAAAGATAATACAAATATTACCACATAACTAGTTTAGAATGCATAGGTCCATAACTGTCCTTCAATTATCATTTGGTAGATGAGGTTAAACACAAAAAGCATGAACTATCTTGGAGAGCTAGCTTTCCTTTAACCATTACAGTAACAATAAGAACAGCCTTTAGTCCCAAGCAATTTGGGGTAGGCTAGACAGGAAATCCAAGTCAAACCACAT]
consensusID : consensus_5360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 315 fasta sequence
[TGCTTTTGTTTTTTGCTTTGTTATGCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACCATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAAAATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTTTACCGACTTCCATC]
[+] EMBL CA998931 [TGCTTTTGTTTTTTGCTTTGTTATGCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACCATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAAAATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTTTACCGACTTCCATC]
[+] EMBL CA998928 [TGCTTTTGTTTTTTGCTTTGTTATGCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAATTGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCTGACAAAACAATGGATATCAAGCATGATGCTTAGAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5360#0 AACCATCTTCACCTAAACCCGTCCACACGCCGGGTGGCCGCCAGTTCAGCGAGTGACGAC 60
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 GACGACCCCCCACGCGCGGCGGCCGCGCCCATCTCCGTCGCCTCCCCGCCGGCCATGTCG 120
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 GTGCCGCCCGCCAGCCACCGCCAGGTGTCCCTGAGGGGATCGAGCGCGAGGGAGATCACC 180
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 CGCGACGCGCTGCTGCAGAAGGTCTCCGAGGAGCGCCAGCTCCGCAGCCACCTCCGCCGC 240
consensus_5360#1 -----------------------------------------------------------T 1
consensus_5360#0 GCCGCCGCCGCGGCGCTCTCCAT-CCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAAT 299
consensus_5360#1 GCTTTTGTTTTTTGCTTTGTTATGCCAGCGTGTTTGGAGAAGATACTCAGTCATAAGAAT 61
** * * ** ************************************
consensus_5360#0 TGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCT 359
consensus_5360#1 TGTTTCAGAACAGCTCCATGAAGAGTGGGAAGCATTAATAAACCAGCCTGACATTAATCT 121
************************************************************
consensus_5360#0 GACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACC 419
consensus_5360#1 GACAAAACAATGGATATCAAGCATGATGCTTAGACCATTTCTTTTCTTCGTTACTCAACC 181
************************************************************
consensus_5360#0 ATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAA 479
consensus_5360#1 ATCAAGCTGGTACAAGGGACAACAGGACAAGACTCTAAACTCGATTTCGGCATGCTTCAA 241
************************************************************
consensus_5360#0 AATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTT 539
consensus_5360#1 AATCATCTTGAATAGCATAAACTCAATGGGTATGCCTTTTTCATAATCAAAGTTTGACTT 301
************************************************************
consensus_5360#0 TACCGACTTCCATCTTGACCTTTTTGTACTTTATTTTCTCCTCCTTAATGAAATGACACG 599
consensus_5360#1 TACCGACTTCCATC---------------------------------------------- 315
**************
consensus_5360#0 CAGCTCTCCTGTGTAGTTTGAAAAAAAATGTTTTACTTTACCCATTCCACTAGTTGTGGT 659
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 TAACTCCTATAAAAATTTATTTATGTAATACTTCCTTTTGCTGTAAGGATTATAATCCTT 719
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 TATATTATTCAATCCTTGTATGGCGATGACCTAATTGTTAGTTCTAGAATGGAATTATGT 779
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 ACTTAACAGAAAAGAAATTGCAGTCGACGTGAGATAAGCAGATACTCCCTCCGTCCCTAA 839
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 ATATAAGGGATTTTGGTTGGATGTGATGTATCCTAGTACTACGAATCTGGACAGAGACTT 899
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 TAATATATATCATATATTTAGTACTAGGATACATCATATCCAACCAAAATTCCCTAAATT 959
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 TAGGGACGGAGGTAGTATTTGTTTTGATATATATATATATTAGTACTGTTTGGTTGAGCA 1019
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 GTGCAATATGGAAGGAATATTACAGTAACTTTTTTCTTGAGGCTCTTGATCCACTGAGCT 1079
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 GGCACAAATGGGTAGTCTCTTCTCGGTGAGATTTTTTTTTTTTTTTTTTTTTGGGGGGGG 1139
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 GGTGGAATGTAGCCTCTAGATATTACTGTTTCAAGAAAAAAGAAGTTCTTTGAATTTGAA 1199
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 TGTAAAGTGCATGCTATGCTTTGATAGACAAGAAGTATGAAGTGGGTCTACGATATGTAA 1259
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 CCTTGTTTAATAATGGACGGATGCATGCTAAGCTACAGAGCGAAGCTCCCAACCAGCTGG 1319
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 CCTCCATGTTTAAAGATAATACAAATATTACCACATAACTAGTTTAGAATGCATAGGTCC 1379
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 ATAACTGTCCTTCAATTATCATTTGGTAGATGAGGTTAAACACAAAAAGCATGAACTATC 1439
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 TTGGAGAGCTAGCTTTCCTTTAACCATTACAGTAACAATAAGAACAGCCTTTAGTCCCAA 1499
consensus_5360#1 ------------------------------------------------------------
consensus_5360#0 GCAATTTGGGGTAGGCTAGACAGGAAATCCAAGTCAAACCACAT 1543
consensus_5360#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||