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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[TTTTTTTTTTTTTTTTTTGGTTATTTTTTTTTGGCTTCAAGCACGTCTGTGTTTTGTCTATTATAAAAGGTCCAACAAACAAACGGGCTTGAAAAACACTGGCCCAATCACTGTCCACGTAACAAAACATATCACGCTTTGCAACGAAAGCTCTGTTTAATAGCTAACATTCTCTGAACATACGTCGGGCTATGAAAAACATGTAATCTACTGTGTTCAAATTTTGGTTCTCTGAACCAAAACCCTTGAAAAGAAAGCAAAGCACTAGAGCCACCTAATTACTAGGGCCTAACTAGATTGACCATTATCTCCACTGGAAGATCAGCCAGAAAACATCACAAGATTGACTTTATCTGTTAGCTTCCTAGTCATCCATAGCGCAATATTAGACCCGTGGCTGCCTCACTGATAACCGTTTTGGGATGCCATGACCGACACACTGACAACCGCTGGAGAGGTATAGGCCATTTCACCCAGCGCCAATAGGATACACAATACAATGGATGCCTTGCTGACCTCCAAGGAAGACGTTGTAGCCATCTCGCCCACCTTGTCTCGCGAACAAAAACACGGCGCATATCCTTGGCCACGGGCTCCCCCCCT]
[+] EMBL CA761249 [TTTTTTTTTTTTTTTTTTGGTTATTTTTTTTTGGCTTCAAGCACGTCTGTGTTTTGTCTATTATAAAAGGTCCAACAAACAAACGGGCTTGAAAAACACTGGCCCAATCACTGTCCACGTAACAAAACATATCACGCTTTGCAACGAAAGCTCTGTTTAATAGCTAACATTCTCTGAACATACGTCGGGCTATGAAAAACATGTAATCTACTGTGTTCAAATTTTGGTTCTCTGAACCAAAACCCTTGAAAAGAAAGCAAAGCACTAGAGCCACCTAATTACTAGGGCCTAACTAGATTGACCATTATCTCCACTGGAAGATCAGCCAGAAAACATCACAAGATTGACTTTATCTGTTAGCTTCCTAGTCATCCATAGCGCAATATTAGACCCGTGGCTGCCTCACTGATAACCGTTTTGGGATGCCATGACCGACACACTGACAACCGCTGGAGAGGTATAGGCCATTTCACCCAGCGCCAATAGGATACACAATACAATGGATGCCTTGCTGACCTCCAAGGAAGACGTTGTAGCCATCTCGCCCACCTTGTCTCGCGAACAAAAACACGGCGCATATCCTTGGCCACGGGCTCCCCCCCT]
consensusID : consensus_5361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence
[GCGCAATATTAGACCCCCAAAAATCAAAATGAGTACTCATTTTACCCCAAAATGAGTACTAGATTGAATCATTCCTGCACTTTAAGAAATTCAACAGTAATTATACCCCAAAAAAAAAGCATTTGTGGCATATACTAGCACCATAAAAGGAGAGCATTAATTAAGGATGGAGAAGTGGATAGCAGGATGTCATCGAACAGATGTAAACTGTGGAAAAGAAGTTCTCATAACAAATACTCATTTCTCAATATCAAAACCACACTGTCCAAACAGCACAGATCAGGTAACTAAAGATGCAAACCGTGGGGTTTACCGTGGCTGCCTCACTGATAACCGTTTTGGGATGCCATGACCGACACACTAACAACCGCTGGAGAGGTATAGGCCATTTCACCCAGCGCCAATAGGATACACAATACAATGGATGCCTTGCTGACCTCCGAGGAAGACGTTGTAGCCATCTCGCCAACCTTGTCTCGCGAACAAAAACACGGCGCATATCCTTGGCCACGGGCTCCGTCGTGACCCGGCGGAACGGACGCCGACATCATCGCGGATGCTGCTGCCGCTTCGCCGCCTCCTCCCCCATCGACGACTTC]
[-] EMBL CF312356 [GCGCAATATTAGACCCCCAAAAATCAAAATGAGTACTCATTTTACCCCAAAATGAGTACTAGATTGAATCATTCCTGCACTTTAAGAAATTCAACAGTAATTATACCCCAAAAAAAAAGCATTTGTGGCATATACTAGCACCATAAAAGGAGAGCATTAATTAAGGATGGAGAAGTGGATAGCAGGATGTCATCGAACAGATGTAAACTGTGGAAAAGAAGTTCTCATAACAAATACTCATTTCTCAATATCAAAACCACACTGTCCAAACAGCACAGATCAGGTAACTAAAGATGCAAACCGTGGGGTTTACCGTGGCTGCCTCACTGATAACCGTTTTGGGATGCCATGACCGACACACTAACAACCGCTGGAGAGGTATAGGCCATTTCACCCAGCGCCAATAGGATACACAATACAATGGATGCCTTGCTGACCTCCGAGGAAGACGTTGTAGCCATCTCGCCAACCTTGTCTCGCGAACAAAAACACGGCGCATATCCTTGGCCACGGGCTCCGTCGTGACCCGGCGGAACGGACGCCGACATCATCGCGGATGCTGCTGCCGCTTCGCCGCCTCCTCCCCCATCGACGACTTC]
[-] EMBL AU162256 [ tttttgAAAGAAG TCTCATAAC AATNC CATTTCTCAATATNAAAACCACANTGT CAAACAGCACAGATCAGGTAACTAAAGATGNAAACCGT GGGTTTACCGTGG TGCCTCACTGATAACCGTTTTGGGATGCCATGACCGACACACTAACAACCGCTGGAGAGGTATAGGCCATTTCACCCAGCGCCAATAGGATACACAATACAATGGATGCCTTGCTGACCTCCGAGGAAGACGTTGTAGCCATCTCGCCAACCTTGTCTCGCGAACAAAAACACGGCGCATATCCTTGGCCACGGGCTCCGTCGTGACCCGGCGGAACGGACGCCGACATCATCGCGGATGCTGCTGCC CTTCGCCGCCTCCTCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5361#0 TTTTTTTTTTTTTTTTTTGGTTATTTTTTTTTGGCTTCAAGCACGTCTGTGTTTTGTCTA 60
consensus_5361#1 -------------------------------------------------------GCGCA 5
* *
consensus_5361#0 TTATAAAAGGTCCAACAAACAAACGGGCTTGAAAAACACTGGCCCAATCACTGTCCACGT 120
consensus_5361#1 ATATTAGACCCCCAAAAATCAAA--------ATGAGTACTCATTTTACCCCAAAATGAGT 57
*** * * **** ** **** * * *** * * * **
consensus_5361#0 AACAAAACATATCACGCTTTGCAACGAAAGCTCTGTTTAATAGCTAACATTCTCTGAACA 180
consensus_5361#1 ACTAGATTGAATCATTCCT-GCACTTTAAGAA--ATTCAACAGTAATTATACCCCAAAAA 114
* * * **** * * *** *** ** ** ** * ** * * ** *
consensus_5361#0 TACGTCGGGCTATGAAAAACATGTAATCTACTGTGTTCAAATTTTGGTTCTCTGAACCAA 240
consensus_5361#1 AAAAGCAT-TTGTGGCATATACTAGCACCATAAAAGGAGAGCATTAATTAA--GGATGGA 171
* * * ** * * * * * * ** ** * * *
consensus_5361#0 AACCCTTGAAAAGAAAGCAAAGCACTAGAGCCACCTAATTACTAGGGCCTAACTAGATTG 300
consensus_5361#1 GAAG--TGGATAGCAGG-ATGTCATCGAACAGATGTAA--ACTGTGG---AAAAGAAGTT 223
* ** * ** * * * ** * * *** *** ** ** * *
consensus_5361#0 ACCATTATCTCCACTGGAAGATCAGCCAGAAAACATCACAAGATTGACTTTATCTGTTAG 360
consensus_5361#1 CTCATAACAAATACTCATTTCTCAATATCAAAACCACACTGTCCAAACAGCACAGATCAG 283
*** * *** *** ***** *** ** * * **
consensus_5361#0 CTTCCTAGTCATCCATAGCGCAATATTAGACCCGTGGCTGCCTCACTGATAACCGTTTTG 420
consensus_5361#1 GTAACTAAAGATGCAAACCGTGGGGTTTA--CCGTGGCTGCCTCACTGATAACCGTTTTG 341
* *** ** ** * ** ** *****************************
consensus_5361#0 GGATGCCATGACCGACACACTGACAACCGCTGGAGAGGTATAGGCCATTTCACCCAGCGC 480
consensus_5361#1 GGATGCCATGACCGACACACTAACAACCGCTGGAGAGGTATAGGCCATTTCACCCAGCGC 401
********************* **************************************
consensus_5361#0 CAATAGGATACACAATACAATGGATGCCTTGCTGACCTCCAAGGAAGACGTTGTAGCCAT 540
consensus_5361#1 CAATAGGATACACAATACAATGGATGCCTTGCTGACCTCCGAGGAAGACGTTGTAGCCAT 461
**************************************** *******************
consensus_5361#0 CTCGCCCACCTTGTCTCGCGAACAAAAACACGGCGCATATCCTTGGCCACGGGCTCCCCC 600
consensus_5361#1 CTCGCCAACCTTGTCTCGCGAACAAAAACACGGCGCATATCCTTGGCCACGGGCTCCGTC 521
****** ************************************************** *
consensus_5361#0 CCT--------------------------------------------------------- 603
consensus_5361#1 GTGACCCGGCGGAACGGACGCCGACATCATCGCGGATGCTGCTGCCGCTTCGCCGCCTCC 581
consensus_5361#0 ------------------
consensus_5361#1 TCCCCCATCGACGACTTC 599
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||