cluster # 5367

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Oryza sativa
cluster # 5367 cluster # 5367 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5367#0 length = 488 sequences # 2

consensus_5367#1 length = 471 sequences # 1

consensusID : consensus_5367#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 488
fasta sequence

                              [GACGAGGATNCAACAAGAAGGATCGGAAGAGCATTTGTGACTTTAGGCCAGGAAGATAAAGAAAAGATTGTCCTCGAGAAATACTTGAAGAAGTACAAGTACGT-GCATTTCAATGGTGAGCGCGTTCGGGTGCGAAGGGGAGGACCTTTGACATAGTAAGCATTCTCCCAATGTCAACGCTTGAAGCCTTGAACCATGTAATGATGAGACGACCTAGAAGGACACACCTTCAATGTATTTAGCAGTTACTGACCCTGGTCCTTTGTGATTACTGTCTTTCCTGAGGCTGTACAAAGATTTCTGTCGTTCCTCTTATGTGAAAGCATGGTTAGATTGTACTGCTTTGTAGGCAAATGAACAGNGGACTCAATACAGNTACTAACTAGATACTGGGTTAGTTAATGGAAAGCATTGNGATGCTCCAAACAAGTAAGATGTGATTCTCCAATGGGTATTTGGAACACCAGTGTAATGACCAAAAAAAAAAA]

[+] EMBL CA765391             [GACGAGGATNCAACAAGAAGGATCGGAAGAGCATTTGTGACTTTAGGCCAGGAAGATAAAGAAAAGATTGTCCTCGAGAAATACTTGAAGAAGTACAAGTACGT GCATTTCAATGGTGAGCGCGTTCGGGTGCGAAGGGGAGGACCTTTGACATAGTAAGCATTCTCCCAATGTCAACGCTTGAAGCCTTGAACCATGTAATGATGAGACGACCTAGAAGGACACACCTTCAATGTATTTAGCAGTTACTGACCCTGGTCCTTTGTGATTACTGTCTTTCCTGAGGCTGTACAAAGATTTCTGTCGTTCCTCTTATGTGAAAGCATGGTTAGATTGTACTGCTTTGTAGGCAAATGAACAGNGGACTCAATACAGNTACTAACTAGATACTGGGTTAGTTAATGGAAAGCATTGNGATGC                                                                    ]
[+] EMBL AU032751             [                                                                     tcCCTCGAGAAATACTTGAAGAAGTACAAGTACATGGCATTTCAATGGTGAGCNCGTTCGGGTGCGAAGGGGAGGCCCTTTGACATAGTAAGCATTCTCCCAATGTCAACGCTTGAANCCTTGAACCATGTAATGATGAGACGACCTAGAAGGACACACCTTCAATGTATTTAGCAGTTACTGACCCTGGTCCTTTGTGATTACTGTCTTTCCTGAGGCTGTACAAAGATTTCTGTCGTTCCTCTTATGTGAAAGCATGGTTAGATTGTACTGCTTTGTAGGCAAATGAACAGTGGACTCAATACAGTTACTAACTAGATACTGGTTTAGTTAATGGAAAGCATTGTGATGCTCCAAACAAGTAAGATGTGATTCTCCAATGGGTATTTGGAACACCAGTGTAATGACCAAAAAAAAAAA]




>consensus_5367#0
GACGAGGATNCAACAAGAAGGATCGGAAGAGCATTTGTGACTTTAGGCCAGGAAGATAAA
GAAAAGATTGTCCTCGAGAAATACTTGAAGAAGTACAAGTACGTGCATTTCAATGGTGAG
CGCGTTCGGGTGCGAAGGGGAGGACCTTTGACATAGTAAGCATTCTCCCAATGTCAACGC
TTGAAGCCTTGAACCATGTAATGATGAGACGACCTAGAAGGACACACCTTCAATGTATTT
AGCAGTTACTGACCCTGGTCCTTTGTGATTACTGTCTTTCCTGAGGCTGTACAAAGATTT
CTGTCGTTCCTCTTATGTGAAAGCATGGTTAGATTGTACTGCTTTGTAGGCAAATGAACA
GNGGACTCAATACAGNTACTAACTAGATACTGGGTTAGTTAATGGAAAGCATTGNGATGC
TCCAAACAAGTAAGATGTGATTCTCCAATGGGTATTTGGAACACCAGTGTAATGACCAAA
AAAAAAAA

consensusID : consensus_5367#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence

                              [CNNGGACNAGACAAGGGGAGGACCTTTGACATAGTAAGCATTCTCCCAATGNCAACGCTNGAAGCCTTGAACCNTGTAATGATGAGACGNCCTAGAAGGACACACCTTCAATGTATTTACNCAGGTTACTGACCCTGGNCCTTTGTGATTGCTGNCTTTCCTGAGGCTGGACAGAGATTTCTGNCGNTCCTCTTATGNGAAAGCATGNTTAGATTGTACTGCTTTGGATGCAAATGAACAGNGGACTCAATACAGGTACTAACTANATACTGGCTTAGNTAATGGAAAGCATTGAGATGCTCCAAACANGCNNNATGCGANATCTCCAATGGGCATTTGAGAACACNAGAGTNATGACCATTTCCCCTTGTTTCAGATNGNNCCAATTATATGGAGCNGCCGCCNCCGCGGAAGGAGCTNCNGNNTTTGGTCCCTTTANTGANGCNTAANTGCNCGCTTGNCGTAAATATG]

[+] EMBL CB097227             [CNNGGACNAGACAAGGGGAGGACCTTTGACATAGTAAGCATTCTCCCAATGNCAACGCTNGAAGCCTTGAACCNTGTAATGATGAGACGNCCTAGAAGGACACACCTTCAATGTATTTACNCAGGTTACTGACCCTGGNCCTTTGTGATTGCTGNCTTTCCTGAGGCTGGACAGAGATTTCTGNCGNTCCTCTTATGNGAAAGCATGNTTAGATTGTACTGCTTTGGATGCAAATGAACAGNGGACTCAATACAGGTACTAACTANATACTGGCTTAGNTAATGGAAAGCATTGAGATGCTCCAAACANGCNNNATGCGANATCTCCAATGGGCATTTGAGAACACNAGAGTNATGACCATTTCCCCTTGTTTCAGATNGNNCCAATTATATGGAGCNGCCGCCNCCGCGGAAGGAGCTNCNGNNTTTGGTCCCTTTANTGANGCNTAANTGCNCGCTTGNCGTAAATATG]




>consensus_5367#1
CNNGGACNAGACAAGGGGAGGACCTTTGACATAGTAAGCATTCTCCCAATGNCAACGCTN
GAAGCCTTGAACCNTGTAATGATGAGACGNCCTAGAAGGACACACCTTCAATGTATTTAC
NCAGGTTACTGACCCTGGNCCTTTGTGATTGCTGNCTTTCCTGAGGCTGGACAGAGATTT
CTGNCGNTCCTCTTATGNGAAAGCATGNTTAGATTGTACTGCTTTGGATGCAAATGAACA
GNGGACTCAATACAGGTACTAACTANATACTGGCTTAGNTAATGGAAAGCATTGAGATGC
TCCAAACANGCNNNATGCGANATCTCCAATGGGCATTTGAGAACACNAGAGTNATGACCA
TTTCCCCTTGTTTCAGATNGNNCCAATTATATGGAGCNGCCGCCNCCGCGGAAGGAGCTN
CNGNNTTTGGTCCCTTTANTGANGCNTAANTGCNCGCTTGNCGTAAATATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5367#0      GACGAGGATNCAACAAGAAGGATCGGAAGAGCATTTGTGACTTTAGGCCAGGAAGATAAA 60
consensus_5367#1      ------------------------------------------------------------
                                                                                  

consensus_5367#0      GAAAAGATTGTCCTCGAGAAATACTTGAAGAAGTACAAGTACGTGCATTTCAATGGTGAG 120
consensus_5367#1      ------------------------------------------------------------
                                                                                  

consensus_5367#0      CGCGTTCGGGTGCGAAGGGGAGGACCTTTGACATAGTAAGCATTCTCCCAATGTCAACGC 180
consensus_5367#1      --CNNGGACNAGACAAGGGGAGGACCTTTGACATAGTAAGCATTCTCCCAATGNCAACGC 58
                        *        *  *************************************** ******

consensus_5367#0      TTGAAGCCTTGAACCATGTAATGATGAGACGACCTAGAAGGACACACCTTCAATGTATTT 240
consensus_5367#1      TNGAAGCCTTGAACCNTGTAATGATGAGACGNCCTAGAAGGACACACCTTCAATGTATTT 118
                      * ************* *************** ****************************

consensus_5367#0      AGC--AGTTACTGACCCTGGTCCTTTGTGATTACTGTCTTTCCTGAGGCTGTACAAAGAT 298
consensus_5367#1      ACNCAGGTTACTGACCCTGGNCCTTTGTGATTGCTGNCTTTCCTGAGGCTGGACAGAGAT 178
                      *     ************** *********** *** ************** *** ****

consensus_5367#0      TTCTGTCGTTCCTCTTATGTGAAAGCATGGTTAGATTGTACTGCTTTGTAGGCAAATGAA 358
consensus_5367#1      TTCTGNCGNTCCTCTTATGNGAAAGCATGNTTAGATTGTACTGCTTTGGATGCAAATGAA 238
                      ***** ** ********** ********* ****************** * *********

consensus_5367#0      CAGNGGACTCAATACAGNTACTAACTAGATACTGGGTTAGTTAATGGAAAGCATTGNGAT 418
consensus_5367#1      CAGNGGACTCAATACAGGTACTAACTANATACTGGCTTAGNTAATGGAAAGCATTGAGAT 298
                      ***************** ********* ******* **** *************** ***

consensus_5367#0      GCTCCAAACAAGTAAGATGTGAT-TCTCCAATGGGTATTTG-GAACACCAGTGTAATGAC 476
consensus_5367#1      GCTCCAAACANGCNNNATGCGANATCTCCAATGGGCATTTGAGAACACNAGAGTNATGAC 358
                      ********** *    *** **  *********** ***** ****** ** ** *****

consensus_5367#0      CAAAAAAAAAAA------------------------------------------------ 488
consensus_5367#1      CATTTCCCCTTGTTTCAGATNGNNCCAATTATATGGAGCNGCCGCCNCCGCGGAAGGAGC 418
                      **                                                          

consensus_5367#0      -----------------------------------------------------
consensus_5367#1      TNCNGNNTTTGGTCCCTTTANTGANGCNTAANTGCNCGCTTGNCGTAAATATG 471